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jalview.git
2017-05-29 Jim ProcterJAL-2533 update javadoc features/JAL-2465_No-mapping_Jmol-structures-loaded-via-url commit | commitdiff | tree | snapshot
2017-05-29 Jim ProcterJAL-2465 fixed groups for JmolViewerTest.testStructureL... commit | commitdiff | tree | snapshot
2017-05-26 tcofoegbuJAL-2465 Improvement to re-instate storing recently... commit | commitdiff | tree | snapshot
2017-05-26 tcofoegbuJAL-2465 fix to prevent files loaded from the system... commit | commitdiff | tree | snapshot
2017-05-15 tcofoegbuJAL-2520 improvement to use URL leaf name for creating... commit | commitdiff | tree | snapshot
2017-05-15 tcofoegbuJAL-2533 improvement to prune off file extension when... commit | commitdiff | tree | snapshot
2017-05-09 tcofoegbuJAL-2520 improvement to download and update structure... commit | commitdiff | tree | snapshot
2017-05-09 tcofoegbuJAL-2520 unit test for improvement to download structur... commit | commitdiff | tree | snapshot
2017-05-09 tcofoegbuJAL-2465 fix to dynamically specify data source type... commit | commitdiff | tree | snapshot
2017-05-08 tcofoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2017-05-08 gmungocJAL-1933 Spanish tooltips for annotation commit | commitdiff | tree | snapshot
2017-05-08 gmungocJAL-1632 i18n for warning messages commit | commitdiff | tree | snapshot
2017-05-08 gmungocMerge remote-tracking branch 'origin/bug/JAL-2515'... commit | commitdiff | tree | snapshot
2017-05-08 kiramtJAL-2515 Id panel in applet updated for NPE on urlProvider bug/JAL-2515 commit | commitdiff | tree | snapshot
2017-05-08 kiramtJAL-2512 And corresponding test bug/JAL-2512 commit | commitdiff | tree | snapshot
2017-05-08 kiramtJAL-2512 And applet commit | commitdiff | tree | snapshot
2017-05-08 kiramtJAL-2512 Fix to show non-gap positions in None colour... commit | commitdiff | tree | snapshot
2017-05-04 gmungocJAL-2506 allow graduated colour as default in new Seque... commit | commitdiff | tree | snapshot
2017-05-04 gmungocJAL-2510 ensure modified feature type is displayed commit | commitdiff | tree | snapshot
2017-05-04 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2017-05-04 gmungocJAL-2504 allow feature type to be specified for Create... commit | commitdiff | tree | snapshot
2017-05-04 Jim ProcterMerge branch 'bug/JAL-2507_rnasecstrstockholmoutput... commit | commitdiff | tree | snapshot
2017-05-04 Jim ProcterMerge branch 'features/JAL-2503_filteronquantitativeann... commit | commitdiff | tree | snapshot
2017-05-04 Jim ProcterMerge branch 'features/JAL-2393customMatrices' into... commit | commitdiff | tree | snapshot
2017-05-04 Jim ProcterJAL-1656 make RNAML->Stockholm round trip test pass... commit | commitdiff | tree | snapshot
2017-05-04 Jim ProcterJAL-2507 JAL-2509 allow differences in visibility of... commit | commitdiff | tree | snapshot
2017-05-04 Jim ProcterJAL-2507 JAL-2509 new assert to compare secondary struc... commit | commitdiff | tree | snapshot
2017-05-04 Jim Procterfix for JAL-2509 - don’t replace all bracket types... commit | commitdiff | tree | snapshot
2017-05-04 Jim Procterfix for JAL-2507 - resolve stockholm per residue annota... commit | commitdiff | tree | snapshot
2017-05-04 tcofoegbuMerge branch 'features/JAL-2473_set-minimium-dimensions... commit | commitdiff | tree | snapshot
2017-05-04 tcofoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2017-05-04 Jim ProcterMerge branch 'features/JAL-2503_filteronquantitativeann... commit | commitdiff | tree | snapshot
2017-05-04 Jim ProcterMerge branch 'features/JAL-2393customMatrices' into... commit | commitdiff | tree | snapshot
2017-05-03 Jim ProcterJAL-2393 JAL-2416 refresh the score model menu when... features/JAL-2393customMatrices commit | commitdiff | tree | snapshot
2017-05-03 Jim ProcterJAL-2503 show threshold slider for quantitative annotat... commit | commitdiff | tree | snapshot
2017-05-03 Jim ProcterJAL-2503 AlignmentAnnotation.isQuantitative() test commit | commitdiff | tree | snapshot
2017-05-03 gmungocJAL-2246 basic sanity test of fetching example accessions commit | commitdiff | tree | snapshot
2017-05-03 Jim ProcterMerge branch 'features/JAL-2432_annotbypercent' into... commit | commitdiff | tree | snapshot
2017-05-03 Jim ProcterJAL-1933 JAL-2501 i18n for all auto calculated descriptions features/JAL-2432_annotbypercent commit | commitdiff | tree | snapshot
2017-05-03 Jim ProcterJAL-1933 show occupancy in tooltip for row commit | commitdiff | tree | snapshot
2017-05-03 gmungocJAL-2246 test a Uniprot fetch commit | commitdiff | tree | snapshot
2017-05-03 Jim ProcterJAL-2432 honour percentage checkbox when entering value... commit | commitdiff | tree | snapshot
2017-05-03 Jim ProcterJAL-2432 applet: only enable percent checkbox when... commit | commitdiff | tree | snapshot
2017-05-03 Jim ProcterJAL-2432 percentage checkbox follows threshold value... commit | commitdiff | tree | snapshot
2017-05-03 gmungocJAL-2105 Ensembl REST now at 5.0 commit | commitdiff | tree | snapshot
2017-05-03 gmungocJAL-2485 JAL-2246 test Uniprot FTS summary commit | commitdiff | tree | snapshot
2017-05-03 Jim ProcterJAL-2432 recover state for ‘display percentage’ checkbox commit | commitdiff | tree | snapshot
2017-05-03 Jim ProcterJAL-2432 simplify code commit | commitdiff | tree | snapshot
2017-05-02 Jim ProcterJAL-1632 validate CalculationChooser when selection... commit | commitdiff | tree | snapshot
2017-05-02 Jim ProcterJAL-1632 enable/disable CalculationChooser buttons... commit | commitdiff | tree | snapshot
2017-05-02 Jim ProcterJAL-1632 compare size of input against minimums for... commit | commitdiff | tree | snapshot
2017-05-02 Jim ProcterJAL-1632 OK->Calculate, Cancel->Close buttons commit | commitdiff | tree | snapshot
2017-05-02 Jim ProcterJAL-1632 removed ‘tree’ option and changed dialog layout commit | commitdiff | tree | snapshot
2017-05-02 gmungocJAL-1933 Spanish for Occupancy commit | commitdiff | tree | snapshot
2017-05-02 Jim ProcterJAL-2424 fixme’s removed commit | commitdiff | tree | snapshot
2017-05-02 Jim ProcterJAL-2424 update assert to correct width for normalising... commit | commitdiff | tree | snapshot
2017-05-02 Jim ProcterJAL-2424 resolved, assert updated to pass (1f != 1d) commit | commitdiff | tree | snapshot
2017-05-02 Jim ProcterMerge branch 'develop' into features/JAL-2393customMatrices commit | commitdiff | tree | snapshot
2017-05-02 Jim ProcterMerge branch 'bug/JAL-2424getVisibleContigs' into develop commit | commitdiff | tree | snapshot
2017-05-02 gmungocJAL-2499 inlined two 1-line methods commit | commitdiff | tree | snapshot
2017-05-02 gmungocJAL-2499 JAL-2403 push 'configure for view' inside... commit | commitdiff | tree | snapshot
2017-05-02 gmungocMerge branch 'develop' into features/JAL-2393customMatrices commit | commitdiff | tree | snapshot
2017-05-01 tcofoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2017-05-01 tcofoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2017-05-01 tcofoegbuJAL-2482 bug fix commit | commitdiff | tree | snapshot
2017-05-01 tcofoegbuJAL-2482 unit test for bug fix commit | commitdiff | tree | snapshot
2017-05-01 gmungocJAL-2489 JAL-2371 reinstate calls to commit | commitdiff | tree | snapshot
2017-05-01 tcofoegbuJAL-2465 missed commit for refactore renaming of getPdb... commit | commitdiff | tree | snapshot
2017-05-01 tcofoegbuJAL-2465 bugfix and rerefactor renamed getPdbFile(... commit | commitdiff | tree | snapshot
2017-05-01 tcofoegbuJAL-2465 unit test for bugfix commit | commitdiff | tree | snapshot
2017-05-01 gmungocMerge remote-tracking branch commit | commitdiff | tree | snapshot
2017-04-28 gmungocMerge branch 'develop' into features/JAL-2393customMatrices commit | commitdiff | tree | snapshot
2017-04-27 Jim ProcterMerge branch 'features/JAL-1933_occupancy' into develop commit | commitdiff | tree | snapshot
2017-04-27 Jim ProcterJAL-1933 patch jalview/io/testProps.jvprops to show... features/JAL-1933_occupancy commit | commitdiff | tree | snapshot
2017-04-27 Jim ProcterJAL-1933 patch jalview/io/testProps.jvprops to show... commit | commitdiff | tree | snapshot
2017-04-27 Jim ProcterMerge branch 'features/JAL-1933_occupancy' into develop commit | commitdiff | tree | snapshot
2017-04-27 Jim ProcterJAL-1933 don't show occupancy row when testing conserva... commit | commitdiff | tree | snapshot
2017-04-27 Jim ProcterMerge branch 'features/JAL-1933_occupancy' into develop commit | commitdiff | tree | snapshot
2017-04-27 Jim ProcterJAL-1933 applet doc for showOccupancy parameter commit | commitdiff | tree | snapshot
2017-04-27 Jim ProcterJAL-1933 desktop documentation for show occupancy prefe... commit | commitdiff | tree | snapshot
2017-04-27 Jim ProcterJAL-1933 use constant for preference token commit | commitdiff | tree | snapshot
2017-04-27 Jim ProcterMerge branch 'features/JAL-1933_occupancy' into develop commit | commitdiff | tree | snapshot
2017-04-27 Jim ProcterJAL-1933 consensus calculation doesn’t depend on occupa... commit | commitdiff | tree | snapshot
2017-04-27 Jim ProcterJAL-1933 desktop preferences for occupancy commit | commitdiff | tree | snapshot
2017-04-27 Jim ProcterJAL-1933 action and label for occupancy commit | commitdiff | tree | snapshot
2017-04-27 Jim ProcterJAL-1933 test for SHOW_OCCUPANCY .jalview_properties... commit | commitdiff | tree | snapshot
2017-04-27 Jim ProcterJAL-1933 showOccupancy applet parameter and SHOW_OCCUPA... commit | commitdiff | tree | snapshot
2017-04-27 Jim ProcterJAL-1933 only create and add occupancy row to alignment... commit | commitdiff | tree | snapshot
2017-04-27 Jim ProcterJAL-2494 fix: updated behaviour for SequenceGroup.findA... commit | commitdiff | tree | snapshot
2017-04-27 Jim ProcterJAL-2494 fixed behaviour for null parameters in line... commit | commitdiff | tree | snapshot
2017-04-27 Jim ProcterJAL-2494 javadoc for AnnotatedCollectionI.findAnnotations commit | commitdiff | tree | snapshot
2017-04-27 Jim ProcterJAL-2494 test to cover AnnotatedCollectionI.findAnnotat... commit | commitdiff | tree | snapshot
2017-04-27 Jim ProcterMerge branch 'features/JAL-1933_occupancy' into develop commit | commitdiff | tree | snapshot
2017-04-27 Jim ProcterJAL-2432 desktop: filter/select columns by threshold... commit | commitdiff | tree | snapshot
2017-04-27 Jim ProcterJAL-1933 JAL-2432 code tidy commit | commitdiff | tree | snapshot
2017-04-27 Jim ProcterJAL-2432 left justify value shown after adjusting thres... commit | commitdiff | tree | snapshot
2017-04-27 Jim ProcterJAL-1933 JAL-2432 percentile filter for select/hide... commit | commitdiff | tree | snapshot
2017-04-27 Jim ProcterJAL-1933 shade occupancy from light grey to black for... commit | commitdiff | tree | snapshot
2017-04-27 Jim ProcterJAL-1933 don’t show symbol counts under histogram ... commit | commitdiff | tree | snapshot
2017-04-27 Jim ProcterJAL-1933 occupancy row has a space below it for counts commit | commitdiff | tree | snapshot
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