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jalview.git
2018-07-18 Jim ProcterMerge branch 'features/mchmmer' into features/mchmmer_m... features/mchmmer_merge_JAL-1950 commit | commitdiff | tree | snapshot
2018-06-06 gmungocJAL-3013 resolve symlink to hmmer binaries folder features/mchmmer commit | commitdiff | tree | snapshot
2018-06-06 gmungocMerge branch 'develop' into features/mchmmer commit | commitdiff | tree | snapshot
2018-06-06 gmungocJAL-3013 ensure Chimera as a symlink gets resolved commit | commitdiff | tree | snapshot
2018-06-06 gmungocJAL-2956 don't load (non-existent) HMMER jar entry... commit | commitdiff | tree | snapshot
2018-06-05 gmungocJAL-3011 include annotation scores in sequence id toolt... commit | commitdiff | tree | snapshot
2018-06-05 gmungocMerge branch 'develop' into features/mchmmer commit | commitdiff | tree | snapshot
2018-06-04 gmungocJAL-2808 update test for revised treatment of 'mixed... commit | commitdiff | tree | snapshot
2018-06-04 gmungocJAL-3019 correctly form toRange of 'traversed' MapList commit | commitdiff | tree | snapshot
2018-06-04 gmungocJAL-3018 updated REST versions to 6.3 commit | commitdiff | tree | snapshot
2018-06-01 Jim ProcterJAL-3012 JAL-2937 TODO avoid creating data copies by... commit | commitdiff | tree | snapshot
2018-06-01 Jim ProcterJAL-2937 hmmbuild input data generated via AlignmentVie... commit | commitdiff | tree | snapshot
2018-06-01 Jim ProcterJAL-1950 JAL-2937 allow individual groups to be remater... commit | commitdiff | tree | snapshot
2018-06-01 Jim ProcterJAL-1551 formatting commit | commitdiff | tree | snapshot
2018-06-01 Jim ProcterJAL-1950 JAL-2937 allow copy of group without sequences... commit | commitdiff | tree | snapshot
2018-06-01 Jim ProcterJAL-1950 JAL-2937 allow copy of sequences from group... commit | commitdiff | tree | snapshot
2018-05-31 Jim ProcterJAL-1950 JAL-2629 insert gaps into HMM used to search... commit | commitdiff | tree | snapshot
2018-05-31 Jim ProcterJAL-2629 (probably not right issue) JAL-1950 - make... commit | commitdiff | tree | snapshot
2018-05-31 Jim ProcterJAL-3011 JAL-2719 JAL-1958 add posterior probability... commit | commitdiff | tree | snapshot
2018-05-31 Jim ProcterJAL-3011 - show score in annotation row - looks like... commit | commitdiff | tree | snapshot
2018-05-31 Jim ProcterJAL-1958 use the annotation score for the sequence... commit | commitdiff | tree | snapshot
2018-05-31 Jim ProcterJAL-1950 JAL-1958 disable per-row score modulation... commit | commitdiff | tree | snapshot
2018-05-31 gmungocJAL-2808 don't capture or report min-max for mixed... commit | commitdiff | tree | snapshot
2018-05-31 Jim ProcterMerge branch 'spike/JAL-1950_hmmer3client' into feature... commit | commitdiff | tree | snapshot
2018-05-31 Jim ProcterMerge branch 'develop' into spike/JAL-1950_hmmer3client commit | commitdiff | tree | snapshot
2018-05-31 gmungocJAL-2808 pre-fill numeric inequality filter with min... commit | commitdiff | tree | snapshot
2018-05-30 gmungocJAL-2629 suppress 'Add Database' menu option in favour... commit | commitdiff | tree | snapshot
2018-05-30 gmungocJAL-3005 JAL-2629 file chooser argument for HMM search... commit | commitdiff | tree | snapshot
2018-05-30 gmungocJAL-3005 JAL-3008 render file chooser and radio button... commit | commitdiff | tree | snapshot
2018-05-30 gmungocJAL-3008 new parameter type RadioChoiceParameter commit | commitdiff | tree | snapshot
2018-05-30 gmungocJAL-3005 new argument type FileParameter for file chooser commit | commitdiff | tree | snapshot
2018-05-29 gmungocJAL-3005 refactor updateRecentlyOpened to enable reuse commit | commitdiff | tree | snapshot
2018-05-29 Mungo CarstairsJAL-2994 utility method to match a list of folder/file... commit | commitdiff | tree | snapshot
2018-05-28 gmungocJAL-2994 restrict search to \Program Files\Chimera* commit | commitdiff | tree | snapshot
2018-05-28 gmungocJAL-2994 use pattern matches to search for chimera.exe commit | commitdiff | tree | snapshot
2018-05-28 gmungocMerge branch 'develop' into features/mchmmer commit | commitdiff | tree | snapshot
2018-05-28 gmungocMerge branch 'bug/JAL-797' into develop commit | commitdiff | tree | snapshot
2018-05-28 gmungocMerge remote-tracking branch 'origin/releases/Release_2... commit | commitdiff | tree | snapshot
2018-05-26 Jim ProcterJAL-2999 release date for 2.10.4b1 set for 27th May... commit | commitdiff | tree | snapshot
2018-05-25 Jim ProcterMerge branch 'documentation/JAL-2999_r2104b1' into... commit | commitdiff | tree | snapshot
2018-05-25 Jim ProcterMerge branch 'bug/JAL-2992panelHeight' into releases... commit | commitdiff | tree | snapshot
2018-05-25 Jim ProcterMerge branch 'bug/JAL-1460_dragndropWindows' into relea... commit | commitdiff | tree | snapshot
2018-05-25 gmungocJAL-2992 simpler heuristic for available height bug/JAL-2992panelHeight commit | commitdiff | tree | snapshot
2018-05-25 Jim ProcterMerge branch 'bug/JAL-2991_exporttosvgwrapview' into... commit | commitdiff | tree | snapshot
2018-05-25 Jim ProcterMerge branch 'feature/JAL-2994chimeraPath' into release... commit | commitdiff | tree | snapshot
2018-05-25 Jim ProcterJAL-1460 clarify release notes - and mention that short... commit | commitdiff | tree | snapshot
2018-05-25 Jim ProcterJAL-2994 add a few future release points for good measu... feature/JAL-2994chimeraPath commit | commitdiff | tree | snapshot
2018-05-25 Jim ProcterJAL-1460 temp variable for clearer conditional and... bug/JAL-1460_dragndropWindows commit | commitdiff | tree | snapshot
2018-05-25 Jim ProcterJAL-1460 javadoc commit | commitdiff | tree | snapshot
2018-05-25 gmungocJAL-2995 tooltip on fields with double-click to browse... commit | commitdiff | tree | snapshot
2018-05-25 gmungocJAL-2994 temporary patch with paths to Chimera for... commit | commitdiff | tree | snapshot
2018-05-24 Jim ProcterJAL-2999 issues resolved (or nearly so) for 2.10.4b1 commit | commitdiff | tree | snapshot
2018-05-24 gmungocJAL-2997 additional tests commit | commitdiff | tree | snapshot
2018-05-24 Jim ProcterJAL-1460 tidied up the use of windows link file parser commit | commitdiff | tree | snapshot
2018-05-24 Jim ProcterJAL-1460 more complete drag'n'drop debugging info and... commit | commitdiff | tree | snapshot
2018-05-24 Jim ProcterJAL-1460 process .lnk files dragged to Jalview when... commit | commitdiff | tree | snapshot
2018-05-24 Jim ProcterJAL-1460 new data flavor for URLs added belt-and-braces... commit | commitdiff | tree | snapshot
2018-05-23 gmungocJAL-2993 AlignFrame listen for keystrokes in OverviewPanel commit | commitdiff | tree | snapshot
2018-05-23 gmungocJAL-2997 unit test commit | commitdiff | tree | snapshot
2018-05-23 Jim Procterfix for JAL-2991 - we could do better :/ bug/JAL-2991_exporttosvgwrapview commit | commitdiff | tree | snapshot
2018-05-23 gmungocJAL-2997 handle tab-delimited trailing column number... commit | commitdiff | tree | snapshot
2018-05-23 Jim ProcterJAL-2999 release notes and version bump for jalview... commit | commitdiff | tree | snapshot
2018-05-23 Jim ProcterJAL-2895 replace $$Jalview-Version$$ in help.jhm with... commit | commitdiff | tree | snapshot
2018-05-22 gmungocJAL-2716 fix to reset choice parameter on Revert commit | commitdiff | tree | snapshot
2018-05-22 gmungocJAL-2716 fix broken checkIfModified behaviour commit | commitdiff | tree | snapshot
2018-05-22 gmungocJAL-2629 method refactor and menu tidying commit | commitdiff | tree | snapshot
2018-05-21 gmungocJAL-797 Cmd-W act WHEN_IN_FOCUSED_WINDOW bug/JAL-797 commit | commitdiff | tree | snapshot
2018-05-15 gmungocJAL-2719 parse bit score annotation from search results commit | commitdiff | tree | snapshot
2018-05-15 gmungocJAL-1264 exclude score-only from 'Add Reference Annotat... commit | commitdiff | tree | snapshot
2018-05-15 gmungocJAL-2629 JAL-2937 respect 'align automatically' option... commit | commitdiff | tree | snapshot
2018-05-14 gmungocJAL-2989 refactoring to reduce code duplication commit | commitdiff | tree | snapshot
2018-05-14 gmungocJAL-2711 show short file names in search database combo box commit | commitdiff | tree | snapshot
2018-05-14 gmungocJAL-2989 support value display names for Option or... commit | commitdiff | tree | snapshot
2018-05-14 gmungocJAL-2711 removed unused and flaky utility method commit | commitdiff | tree | snapshot
2018-05-14 gmungocJAL-2939 check for hmm present when processing groups commit | commitdiff | tree | snapshot
2018-05-11 gmungocJAL-2985 show label instead of checkbox for a required... commit | commitdiff | tree | snapshot
2018-05-11 gmungocMerge branch 'develop' into features/mchmmer commit | commitdiff | tree | snapshot
2018-05-11 gmungocJAL-2986 corrected findIndex for out of range residue... commit | commitdiff | tree | snapshot
2018-05-11 gmungocJAL-2986 additional asserts for SequenceCursor updates commit | commitdiff | tree | snapshot
2018-05-11 gmungocJAL-2986 failing test added commit | commitdiff | tree | snapshot
2018-05-10 gmungocJAL-2629 revert to showing Profile parameter even if... commit | commitdiff | tree | snapshot
2018-05-10 gmungocJAL-2629 default HMMBuild to alignment if not specified... commit | commitdiff | tree | snapshot
2018-05-10 gmungocJAL-591 reduced updating by checking/setting 'updating... commit | commitdiff | tree | snapshot
2018-05-10 gmungocJAL-2629 handle decline 'Add Database' commit | commitdiff | tree | snapshot
2018-05-10 gmungocJAL-2629 adjust placement and optionality of arguments... commit | commitdiff | tree | snapshot
2018-05-10 gmungocJAL-591 show choice list with a single option commit | commitdiff | tree | snapshot
2018-05-10 Jim ProcterJAL-2920 release notes Release_2_10_4 commit | commitdiff | tree | snapshot
2018-05-10 Jim ProcterMerge branch 'bug/JAL-2920_uniprotvariantfeature' into... commit | commitdiff | tree | snapshot
2018-05-10 Jim ProcterJAL-2920 basic test for Description from features with... commit | commitdiff | tree | snapshot
2018-05-10 Jim ProcterJAL-2920 simplified logic and added corner cases for... commit | commitdiff | tree | snapshot
2018-05-09 Jim ProcterJAL-2906 update release date and release notes commit | commitdiff | tree | snapshot
2018-05-09 Jim ProcterJAL-2931 patch IA paths for new build box commit | commitdiff | tree | snapshot
2018-05-09 gmungocJAL-2714 HMMSearch cutoff by E-Value, Score or None commit | commitdiff | tree | snapshot
2018-05-09 gmungocJAL-2984 add pdb as sequence(s) if associate structure... commit | commitdiff | tree | snapshot
2018-05-09 Jim ProcterMerge branch 'patch/JAL-2976_vaqua4_fallback' into... commit | commitdiff | tree | snapshot
2018-05-09 Jim ProcterJAL-2976 fixed bad equivalence check and implemented... commit | commitdiff | tree | snapshot
2018-05-08 Jim ProcterJAL-2321 release notes commit | commitdiff | tree | snapshot
2018-05-08 Jim ProcterMerge branch 'patch/JAL-2321_addsecstrForDroppedPDBFile... commit | commitdiff | tree | snapshot
2018-05-08 gmungocMerge branch 'develop' into features/mchmmer commit | commitdiff | tree | snapshot
2018-05-07 Jim ProcterJAL-2321 patch test to ensure structures are actually... patch/JAL-2321_addsecstrForDroppedPDBFile commit | commitdiff | tree | snapshot
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