jalview.git
2022-06-24 Jim ProcterJAL-2349 TODO for tests features/r2_11_2_alphafold/JAL-2349_JAL-3855
2022-06-24 Jim ProcterJAL-2349 JAL-3855 formatting
2022-06-24 Jim ProcterJAL-4033 TODO re highlighting current column selection
2022-06-24 Jim ProcterJAL-2349 debugged and simplified (a little) the scaled...
2022-06-24 Jim ProcterJAL-3855 update EBI Alphafold barcoded URL generation...
2022-06-24 Jim ProcterJAL-2349 JAL-3855 resolve sequence position for contact...
2022-06-10 Jim ProcterJAL-2349 JAL-4027 JAL-3855 quick hack to add contact...
2022-06-10 Jim ProcterJAL-4027 getter for contact matrices on the Alignment.
2022-06-10 Jim ProcterJAL-1551 formatting
2022-06-10 Jim ProcterMerge branch 'features/r2_11_2_alphafold/JAL-2349_JAL...
2022-06-09 Jim ProcterJAL-4012 - JAL-4020 release notes and a bit of ‘trouble...
2022-06-09 Jim ProcterMerge branch 'bug/JAL-4020_add_pymolwin_paths' into...
2022-06-09 Jim ProcterJAL-4004 add the autogenerated whatsNew.html and releas...
2022-06-09 Jim ProcterJAL-4014 release notes for JAL-4026 patches
2022-06-09 Jim ProcterJAL-4026 increase timeouts for command line ops
2022-06-09 Jim ProcterJAL-4026 ignore StructureSelectionManager events if...
2022-06-09 Jim ProcterJAL-4026 always wait 50ms before checking if the calcul...
2022-06-09 Jim ProcterJAL-4026 update the viewport’s wrapped width after...
2022-06-08 Jim ProcterJAL-4014 release notes for JAL-4023 and JAL-4024
2022-06-08 Jim ProcterMerge branch 'improvement/JAL-4023_snotation_for_trees...
2022-06-08 Jim ProcterMerge branch 'patch/JAL-4024_jumpScrollHang' into develop
2022-06-08 Jim ProcterJAL-4012 what’s new and release notes (in the new style...
2022-06-08 Jim ProcterJAL-4004 delete temporary file mistakenly checked in
2022-06-08 Jim ProcterMerge branch 'issues/JAL-3553+JAL-3978+JAL-3989+JAL...
2022-06-08 Jim ProcterJAL-4024 only render partially when new view overlaps... patch/JAL-4024_jumpScrollHang
2022-06-07 Ben SoaresJAL-4020 class formatting
2022-06-07 Ben SoaresJAL-4020 added the \Scripts\pymol.exe. to the pathList
2022-06-06 Ben SoaresJAL-4020 Added the +2 arg for PyMOLWin.exe allowing...
2022-06-06 Ben SoaresJAL-4020 updated tests
2022-06-06 Ben SoaresJAL-4020 class reformatting
2022-06-06 Ben SoaresJAL-4020 Added path search for global installation...
2022-06-06 Jim ProcterJAL-4023 use %g for distances (scientific notation... improvement/JAL-4023_snotation_for_trees
2022-06-06 Ben SoaresJAL-4020 Added search for PyMOLWinWithConsole.bat ...
2022-06-06 Jim ProcterJAL-4023 store distances as doubles
2022-05-12 Ben SoaresMerge branch 'develop' into issues/JAL-3553+JAL-3978... issues/JAL-3553+JAL-3978+JAL-3989+JAL-4004_merged_with_develop
2022-05-11 Jim ProcterMerge branch 'patch/JAL-4008_jabaws_2_2_1_patch' into...
2022-05-11 Jim ProcterJAL-4012 JAL-4008 release notes for Jalview 2.11.2.3
2022-05-10 Jim ProcterJAL-4008 update jabaws client to 2.2.1 - definitely... patch/JAL-4008_jabaws_2_2_1_patch
2022-05-10 Jalview Development... Merge branch 'releases/Release_2_11_2_Branch' Release_2_11_2_2
2022-05-10 Ben SoaresJAL-4004 cosmetic improvements for Java documentation...
2022-05-09 Ben SoaresJAL-4004 gradle task releasesTemplates now part of...
2022-05-09 Ben SoaresJAL-4004 working templates and generated whatsNew.html...
2022-05-09 Ben SoaresJAL-4004 remove stray empty h3 headers
2022-05-09 Ben SoaresJAL-4004 gradle releasesTemplates builds releases.html
2022-05-09 Ben SoaresJAL-4004 Temporary mechanism to add JalviewJS link...
2022-05-09 Ben SoaresJAL-3989 Code tidying, added JVL_HEADER for older versi...
2022-05-05 Ben SoaresJAL-4004 Now generating hugo files from help/markdown/...
2022-05-04 Ben SoaresJAL-4004 existing releases-VERSION.md files and release...
2022-05-04 Ben SoaresJAL-4004 locations for markdown to go into whatsnew...
2022-05-03 Ben SoaresJAL-3989 improved parsing and formatting now using...
2022-05-03 Ben SoaresJAL-1544 minor errors in releases.html and one missing...
2022-04-29 Ben SoaresJAL-3989 small improvements to output markdown
2022-04-28 Ben SoaresJAL-3989 add in issue shortcodes to the archive version...
2022-04-27 Ben SoaresJAL-1544 version number typo, probably copy and paste
2022-04-27 Ben SoaresJAL-3989 Populate template files for hugo build: archiv...
2022-04-25 Ben SoaresJAL-3989 moved getdown build dirs to build/website...
2022-04-25 Ben SoaresJAL-3989 Independent creation of JSON installer sections
2022-04-25 Ben SoaresJAL-3978 clean up unnecessary local variables for JALVI...
2022-04-22 Ben SoaresJAL-3989 Changed to using com.google.common.hash for...
2022-04-21 Ben SoaresMerge branch 'develop' into merge/JAL-3978+JAL-3553...
2022-04-19 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch
2022-04-19 Jim ProcterJAL-3992 bump version and report updates in 2.11.2...
2022-04-19 Jim ProcterMerge branch 'bug/JAL-3997_NPE_in_wrapped_mode' into...
2022-04-19 Jim ProcterMerge branch 'bug/JAL-3365_extendedDSSP_via_stockholm...
2022-04-18 Jim ProcterJAL-3997 check for tooltip being null before checking... bug/JAL-3997_NPE_in_wrapped_mode
2022-04-18 Jim ProcterMerge branch 'task/JAL-3992_update_docs' into bug/JAL... bug/JAL-3365_extendedDSSP_via_stockholm
2022-04-18 Jim ProcterJAL-3992 fix path
2022-04-16 Jim ProcterJAL-3365 expand range of allowed DSSP secondary structu...
2022-04-13 Jim ProcterJAL-3992 shift+arrow to jump to next gap/residue in...
2022-04-05 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch
2022-04-05 Jim ProcterJAL-3990 release notes and what’s new Release_2_11_2_1
2022-04-05 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch
2022-04-05 Jim ProcterJAL-3981 patch tests and remove errant imports
2022-04-05 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch
2022-04-05 Jim ProcterJAL-3990 gradle spotlessApply
2022-04-05 Jim ProcterJAL-3990 release notes for 2.11.2.1 patch release
2022-04-05 Jim ProcterMerge branch 'bug/JAL-3980_JAL-3981_tooltips_sequence_d...
2022-04-05 Ben SoaresJAL-3989 slight refactor of build.gradle, add more...
2022-04-04 Ben SoaresJAL-3989 fix a build date once in build.gradle, not...
2022-03-31 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch
2022-03-31 Jim ProcterJAL-3983 release note for JAL-3985
2022-03-31 Jim ProcterMerge branch 'bug/JAL-3085_avoid_414_error_for_PDBFTS...
2022-03-31 Ben SoaresMerge branch 'task/JAL-3553_improved_install4j_output_t...
2022-03-31 Ben SoaresMerge branch 'develop' into improvement/JAL-3978_add_gr...
2022-03-31 Jim ProcterJAL-3085 update tests and mock responses, new P0dtd1...
2022-03-31 Jim ProcterJAL-3985 formatting
2022-03-31 Jim ProcterJAL-3985 split PDB id queries into multiple queries...
2022-03-30 Jim ProcterMerge branch 'patch/JAL-3976_3dbeaconsnull' into develop
2022-03-30 Jim ProcterJAL-3976 fix mock PDBFTS query & responses patch/JAL-3976_3dbeaconsnull
2022-03-30 Jim ProcterJAL-3983 known issue note for JAL-3984
2022-03-30 Jim ProcterJAL-3983 release notes for JAL-3975 and known issue...
2022-03-30 Jim ProcterMerge branch 'bug/JAL-360+JAL-3975_keyboard_input_lost_...
2022-03-30 Jim ProcterJAL-360 JAL-3975 update parent for text colour dialog...
2022-03-30 Ben SoaresJAL-360 JAL-3975 make AlignFrame the parent of FeatureE...
2022-03-30 Jim ProcterJAL-3983 update release notes for JAL-3973
2022-03-30 Jim ProcterJAL-3973 exclude the original RELEASE file so gradle...
2022-03-30 Jim ProcterMerge branch 'bug/JAL-3973_source_tarball_not_building...
2022-03-30 Jim ProcterJAL-3983 release 2.11.2.1 date and release notes
2022-03-25 Jim ProcterJAL-3980 JAL-3979 TODOs bug/JAL-3980_JAL-3981_tooltips_sequence_details
2022-03-25 Jim ProcterJAL-3980 defensive copy - inefficient but fixes bug
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