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jalview.git
2017-12-21 kjvdheideJAL-2871 JAL-2877 hideous attempt at seeing if non... kjvdh/features/testing commit | commitdiff | tree | snapshot
2017-12-20 kjvdheideJAL-2871 JAL-2877 third time's the charm? commit | commitdiff | tree | snapshot
2017-12-20 kjvdheideJAL-2871 JAL-2877 second try at specifying config filel... commit | commitdiff | tree | snapshot
2017-12-20 kjvdheideJAL-2871 JAL-2877 config filepath reference changed... commit | commitdiff | tree | snapshot
2017-12-20 kjvdheideJAL-2871 JAL-2877 moved aptx config file to resources commit | commitdiff | tree | snapshot
2017-12-19 kjvdheideJAL-2877 updated forester.jar commit | commitdiff | tree | snapshot
2017-12-19 kjvdheideMerge remote-tracking branch 'origin/spikes/koen' into... commit | commitdiff | tree | snapshot
2017-12-19 kjvdheideMerge remote-tracking branch 'origin/kjvdh/features... commit | commitdiff | tree | snapshot
2017-12-18 Jim ProcterMerge branch 'kjvdh/features/testing' into spikes/koen commit | commitdiff | tree | snapshot
2017-12-18 gmungocJAL-2754 rename proguard.jar on spike branch commit | commitdiff | tree | snapshot
2017-12-18 gmungocJAL-2754 spike branch updated to latest commit | commitdiff | tree | snapshot
2017-12-18 gmungocJAL-2754 renamed proguard.jar to include version number commit | commitdiff | tree | snapshot
2017-12-18 gmungocJAL-2754 updated proguard.jar to 5.3.3 commit | commitdiff | tree | snapshot
2017-12-18 gmungocJAL-2754 5.3.3 update of proguard.jar commit | commitdiff | tree | snapshot
2017-12-18 gmungocJAL-2754 update to specify Java 1.8(+) commit | commitdiff | tree | snapshot
2017-12-18 gmungocJAL-2754 update to Java 1.8 commit | commitdiff | tree | snapshot
2017-12-12 kjvdheideJAL-2874 filtering alignment now also works when just... commit | commitdiff | tree | snapshot
2017-12-12 kjvdheideJAL-2874 added filtering when a subtree is selected commit | commitdiff | tree | snapshot
2017-12-12 kjvdheideMerge branch 'kjvdh/features/PhylogenyViewer' of https... commit | commitdiff | tree | snapshot
2017-12-12 kjvdheideJAL-2877 disabled Jalview's own viewer for testing spikes/thomas commit | commitdiff | tree | snapshot
2017-12-11 kjvdheideJAL-2872 hide sort button in Aptx unless it's actually... commit | commitdiff | tree | snapshot
2017-12-11 kjvdheideJAL-2877 disabled Jalview's default tree viewer when... commit | commitdiff | tree | snapshot
2017-12-11 kjvdheideJAL-1953 fixed interface misnaming commit | commitdiff | tree | snapshot
2017-12-08 kjvdheideJAL-1953 renaming of concrete implementation as well commit | commitdiff | tree | snapshot
2017-12-08 kjvdheideJAL-2844 reallow clicks to the left of the root (groups... commit | commitdiff | tree | snapshot
2017-12-07 kjvdheideJAL-2866 and .jar removed again commit | commitdiff | tree | snapshot
2017-12-07 kjvdheideJAL-2866 removed reference to Forester as submodule... spikes/toch commit | commitdiff | tree | snapshot
2017-12-07 kjvdheideJAL-2866 forester .jar added to lib commit | commitdiff | tree | snapshot
2017-12-07 kjvdheideJAL-2872 Redundant Aptx GUI menu items hidden, sorting... commit | commitdiff | tree | snapshot
2017-12-06 kjvdheideJAL-2794 disabled branch colors on selection for now commit | commitdiff | tree | snapshot
2017-12-06 kjvdheideJAL-2871 Added check whether configuration has been... commit | commitdiff | tree | snapshot
2017-12-05 kjvdheideJAL-2838 Sorting from the alignment view menu now funct... commit | commitdiff | tree | snapshot
2017-12-05 kjvdheideJAL-2847 Rearranging and cleaning up of database query... commit | commitdiff | tree | snapshot
2017-12-05 kjvdheideJAL-2794 associate leaves now iterates through ALL... commit | commitdiff | tree | snapshot
2017-12-05 kjvdheideJAL-2847 various error popups for db querying now have... commit | commitdiff | tree | snapshot
2017-12-05 kjvdheideJAL-2847 Strings for the various tree databases added commit | commitdiff | tree | snapshot
2017-12-05 kjvdheideJAL-2847 if pfam id is detected in first sequence its... commit | commitdiff | tree | snapshot
2017-12-05 kjvdheideJAL-2847 added pfam to DBRef source name lookup commit | commitdiff | tree | snapshot
2017-12-05 kjvdheideJAL-2805 JAL-2847 JAL-281 added file path to Aptx frame... commit | commitdiff | tree | snapshot
2017-12-05 kjvdheideJAL-2838 tree viewer interface expanded to include... commit | commitdiff | tree | snapshot
2017-12-05 kjvdheideMerge remote-tracking branch 'origin/develop' into... commit | commitdiff | tree | snapshot
2017-12-05 kjvdheideJAL-2838 filled in actionPerformed of the tree sort... commit | commitdiff | tree | snapshot
2017-12-05 kjvdheideJAL-2838 Aptx frames now appear in the alignment sortin... commit | commitdiff | tree | snapshot
2017-12-03 kjvdheideJAL-2847 start of cleaning up db loading code commit | commitdiff | tree | snapshot
2017-12-03 kjvdheideJAL-2844 rearranging code commit | commitdiff | tree | snapshot
2017-11-30 Jim ProcterJAL-2849 release notes commit | commitdiff | tree | snapshot
2017-11-30 Jim ProcterMerge branch 'bug/JAL-2849' into develop commit | commitdiff | tree | snapshot
2017-11-30 Jim ProcterJAL-2849 JAL-2863 file format preferences TODO
 commit | commitdiff | tree | snapshot
2017-11-30 Jim ProcterJAL-2849 fix commit | commitdiff | tree | snapshot
2017-11-29 kjvdheideJAL-2844 check added for clicks left of root node commit | commitdiff | tree | snapshot
2017-11-29 kjvdheideJAL-2844 entirely X coord based partitioning commit | commitdiff | tree | snapshot
2017-11-29 kjvdheideJAL-2844 somewhat better repainting commit | commitdiff | tree | snapshot
2017-11-29 kjvdheideJAL-2844 temporary kludge to draw a line commit | commitdiff | tree | snapshot
2017-11-29 kjvdheideJAL-2844 added grouping to alignment panel based on... commit | commitdiff | tree | snapshot
2017-11-29 kjvdheideJAL-2844 start on colouring back onto the alignment commit | commitdiff | tree | snapshot
2017-11-29 kjvdheideJAL-2844 added colouring to partition selection commit | commitdiff | tree | snapshot
2017-11-28 kjvdheideJAL-2844 added offset to x coord to make it equal 0... commit | commitdiff | tree | snapshot
2017-11-28 kjvdheideMerge remote-tracking branch 'origin/develop' into... commit | commitdiff | tree | snapshot
2017-11-28 kjvdheideJAL-2844 first go at partitioning, based on actual... commit | commitdiff | tree | snapshot
2017-11-28 Jim ProcterMerge branch 'bug/JAL-2859_uniprottowrongpdbid' into... commit | commitdiff | tree | snapshot
2017-11-28 Jim ProcterJAL-2740 release notes commit | commitdiff | tree | snapshot
2017-11-28 Jim ProcterMerge branch 'bug/JAL-2740' into develop commit | commitdiff | tree | snapshot
2017-11-28 Jim ProcterJAL-2827 release notes commit | commitdiff | tree | snapshot
2017-11-28 Jim ProcterMerge branch 'bug/JAL-2827' into develop commit | commitdiff | tree | snapshot
2017-11-28 Jim ProcterJAL-2842 release notes commit | commitdiff | tree | snapshot
2017-11-28 Jim ProcterMerge branch 'bug/JAL-2842' into develop commit | commitdiff | tree | snapshot
2017-11-27 Jim ProcterJAL-2859 disambiguate with PDB ID if no file path bug/JAL-2859_uniprottowrongpdbid commit | commitdiff | tree | snapshot
2017-11-27 Jim ProcterJAL-2859 failing test demonstrating sequences with... commit | commitdiff | tree | snapshot
2017-11-27 Jim ProcterJAL-2851 JAL-2858 release notes for 2.10.3b1 commit | commitdiff | tree | snapshot
2017-11-27 Jim ProcterMerge branch 'bug/JAL-2851' into develop commit | commitdiff | tree | snapshot
2017-11-27 kjvdheideJAL-2852 JAL-2853 forester update commit | commitdiff | tree | snapshot
2017-11-27 kjvdheideJAL-2844 added selection threshold (non-adjusted calcul... commit | commitdiff | tree | snapshot
2017-11-27 kjvdheideJAL-2799 re-enabled change listener for Aptx's tabs... commit | commitdiff | tree | snapshot
2017-11-27 kjvdheideJAL-2844 line drawing at mouse click added on top of... commit | commitdiff | tree | snapshot
2017-11-27 kjvdheideJAL-2853 colours now enabled by default in Aptx commit | commitdiff | tree | snapshot
2017-11-26 kjvdheideJAL-2847 first rough attempt at loading in via database ID commit | commitdiff | tree | snapshot
2017-11-24 kjvdheideJAL-2799 rearranged AptxInit code commit | commitdiff | tree | snapshot
2017-11-24 kjvdheideJAL-2799 ALL trees are now loaded in as separate Aptx... commit | commitdiff | tree | snapshot
2017-11-24 kjvdheideJAL-2794 binding now exclusively supports single tab... commit | commitdiff | tree | snapshot
2017-11-24 kjvdheideMerge branch 'kjvdh/features/PhylogenyViewer' of https... commit | commitdiff | tree | snapshot
2017-11-24 kjvdheideJAL-2838 start on sorting commit | commitdiff | tree | snapshot
2017-11-24 kjvdheideJAL-2838 made getAssociatedPanels public commit | commitdiff | tree | snapshot
2017-11-23 kiramtMerge branch 'develop' into bug/JAL-2851 bug/JAL-2851 commit | commitdiff | tree | snapshot
2017-11-23 kiramtJAL-2851 Fix merge error breaking vertical scrolling commit | commitdiff | tree | snapshot
2017-11-22 kjvdheideJAL-2794 reworked, everything routes via avport.sendsel... commit | commitdiff | tree | snapshot
2017-11-22 kjvdheideJAL-2794 removed several redundancies in the binding... commit | commitdiff | tree | snapshot
2017-11-22 kjvdheideJAL-281 fixed misplaced quote in example text commit | commitdiff | tree | snapshot
2017-11-22 kjvdheideJAL-2844 mouse press code rearranged to prepare for... commit | commitdiff | tree | snapshot
2017-11-22 kjvdheideJAL-2847 small things, filled in actionperformeds commit | commitdiff | tree | snapshot
2017-11-22 kjvdheideJAL-2799 fixed selections not carrying over to tabs... commit | commitdiff | tree | snapshot
2017-11-21 kjvdheideJAL-2847 added database menu items and listeners commit | commitdiff | tree | snapshot
2017-11-21 kjvdheideMerge remote-tracking branch 'origin/releases/Release_2... commit | commitdiff | tree | snapshot
2017-11-21 kjvdheideJAL-281 added string label for loading from database commit | commitdiff | tree | snapshot
2017-11-20 Jim ProcterJAL-2698 only allow InstallAnywhere launches with versi... commit | commitdiff | tree | snapshot
2017-11-20 kjvdheideMerge remote-tracking branch 'origin/releases/Release_2... commit | commitdiff | tree | snapshot
2017-11-20 Jim ProcterJAL-2698 patch path for InstallAnywhere build. Webstart... commit | commitdiff | tree | snapshot
2017-11-20 kjvdheideJAL-2799 JAL-2805 JAL-281 multiple trees can now be... commit | commitdiff | tree | snapshot
2017-11-20 kjvdheideJAL-281 added history box to tree url input window commit | commitdiff | tree | snapshot
2017-11-20 kjvdheideJAL-281 option pane with error handling for selecting... commit | commitdiff | tree | snapshot
2017-11-17 Jim ProcterJAL-2698 tidy release notes and whats new commit | commitdiff | tree | snapshot
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