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2017-03-17 tcofoegbuJAL-2136 JAL-2137 Improvements: enable STRUCTMODEL... merge/JAL-2136_phyre2_integration commit | commitdiff | tree | snapshot
2017-03-14 tcofoegbuJAL-2136 JAL-2137 Improved STRUCTMODEL annotation synta... commit | commitdiff | tree | snapshot
2017-03-10 tcofoegbuJAL-2136 JAL-2137 Modified STRUCTMODEL annotation forma... commit | commitdiff | tree | snapshot
2017-02-28 tcofoegbuJAL-2136 added improvement to parse crudelist file... commit | commitdiff | tree | snapshot
2017-02-20 tcofoegbuJAL-2136 merged and resolved conflicts with 80edaa84d6d... commit | commitdiff | tree | snapshot
2017-02-20 tcofoegbuMerge branch 'reviews/features/JAL-2136_phyre2_integrat... commit | commitdiff | tree | snapshot
2017-02-08 Jim ProcterJAL-2136 update merged code for JAL-2040 for new FileFo... reviews/features/JAL-2136_phyre2_integration_withJims commit | commitdiff | tree | snapshot
2017-01-30 tcofoegbuMerge branch 'reviews/features/JAL-2136_phyre2_integrat... commit | commitdiff | tree | snapshot
2017-01-23 Jim ProcterMerge branch 'features/JAL-2040_JAL-2137_phyre2' into... commit | commitdiff | tree | snapshot
2017-01-20 tcofoegbuJAL-2375 JAL-2376 First commit of implementation for... commit | commitdiff | tree | snapshot
2017-01-19 Jim ProcterMerge branch 'spike/JAL-2040_JAL-2137_phyre2' into... features/JAL-2040_JAL-2137_phyre2 commit | commitdiff | tree | snapshot
2016-12-16 gmungocJAL-2356 enhanced unit test to verify reuse (or not... commit | commitdiff | tree | snapshot
2016-12-14 Jim ProcterMerge branch 'patch/JAL-2197_jpredforjnets' into develop commit | commitdiff | tree | snapshot
2016-12-09 gmungocJAL-2105 updated for reviewed REST version 4.8 commit | commitdiff | tree | snapshot
2016-12-09 gmungocJAL-1895 suppress RNA interaction colour option commit | commitdiff | tree | snapshot
2016-12-08 gmungocJAL-2359 add Window menu entry only after all danger... commit | commitdiff | tree | snapshot
2016-12-07 gmungocJAL-2356 use cached Sifts file if not expired commit | commitdiff | tree | snapshot
2016-12-07 gmungocJAL-2354 handle error response when fetching features commit | commitdiff | tree | snapshot
2016-12-07 gmungocJAL-2344 handle null format, simplify JalviewFileChoose... commit | commitdiff | tree | snapshot
2016-11-30 Jim ProcterMerge branch 'features/JAL-2320_closeChimeraAction... commit | commitdiff | tree | snapshot
2016-11-30 gmungocJAL-2344 use ".cif" for saved mmCIF file (and refactor... commit | commitdiff | tree | snapshot
2016-11-29 gmungocJAL-2329 tests to confirm behaviour of Java extended... commit | commitdiff | tree | snapshot
2016-11-29 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-11-29 gmungocJAL-2344 corrected conversion of Type enum to FileFormat features/JAL-2344FileFormatI commit | commitdiff | tree | snapshot
2016-11-29 Jim ProcterMerge branch 'documentation/JAL-2325_release2101' into... commit | commitdiff | tree | snapshot
2016-11-29 Jim ProcterJAL-2325 update release date in whatsNew commit | commitdiff | tree | snapshot
2016-11-29 gmungocJAL-2344 FileFormat.isStructureFile replaces commit | commitdiff | tree | snapshot
2016-11-29 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... commit | commitdiff | tree | snapshot
2016-11-29 Jim ProcterMerge branch 'documentation/JAL-2325_release2101' into... commit | commitdiff | tree | snapshot
2016-11-28 gmungocMerge branch 'develop' into trialMerge commit | commitdiff | tree | snapshot
2016-11-28 Jim ProcterJAL-2325 JAL-1878 update minimum versions of JRE for... commit | commitdiff | tree | snapshot
2016-11-28 tcofoegbuMerge branch 'features/JAL-2326_JOptionPane-refactoring... commit | commitdiff | tree | snapshot
2016-11-28 gmungocJAL-2344 added FileFormatI.isStructureFile() commit | commitdiff | tree | snapshot
2016-11-28 gmungocJAL-2345 cache generated ImageIcon per file path commit | commitdiff | tree | snapshot
2016-11-28 Jim ProcterMerge branch 'documentation/JAL-2325_release2101' into... commit | commitdiff | tree | snapshot
2016-11-28 Jim ProcterJAL-2325 finalise release notes commit | commitdiff | tree | snapshot
2016-11-25 gmungocJAL-2344 dynamically determine recognised extensions... commit | commitdiff | tree | snapshot
2016-11-25 Jim ProcterMerge branch 'documentation/JAL-2325_release2101' into... commit | commitdiff | tree | snapshot
2016-11-25 Jim ProcterJAL-2325 JAL-2273 update vms bound to different installers commit | commitdiff | tree | snapshot
2016-11-25 Jim ProcterJAL-2325 more ignores on sourcedist build commit | commitdiff | tree | snapshot
2016-11-25 gmungocMerge branch 'develop' into trialMerge commit | commitdiff | tree | snapshot
2016-11-25 gmungocJAL-2344 override to ignore (obsolete?) JalviewFileView commit | commitdiff | tree | snapshot
2016-11-25 gmungocJAL-2344 use .equals() to compare FileFormatI objects commit | commitdiff | tree | snapshot
2016-11-25 gmungocJAL-2344 correct roundtrip test to exclude Jalview... commit | commitdiff | tree | snapshot
2016-11-24 tcofoegbuJAL-2326 added setup method for JvOptionPane in all... features/JAL-2326_JOptionPane-refactoring commit | commitdiff | tree | snapshot
2016-11-24 gmungocDistinguish text-only output formats and others (.jar... commit | commitdiff | tree | snapshot
2016-11-24 tcofoegbuJAL-2326 updated references of JOptionPane to JvOptionPane commit | commitdiff | tree | snapshot
2016-11-24 Jim ProcterMerge branch 'documentation/JAL-2325_release2101' into... commit | commitdiff | tree | snapshot
2016-11-24 Jim ProcterJAL-2325 exclude .class and .* files (install anywhere... commit | commitdiff | tree | snapshot
2016-11-24 Jim ProcterMerge branch 'documentation/JAL-2325_release2101' into... commit | commitdiff | tree | snapshot
2016-11-24 Jim ProcterJAL-2325 applied BSD license for chimera/StrucViz2... commit | commitdiff | tree | snapshot
2016-11-24 gmungocFurther tweaks to get tests passing commit | commitdiff | tree | snapshot
2016-11-24 tcofoegbuJAL-2326 added layer of abstraction between Jalview... commit | commitdiff | tree | snapshot
2016-11-24 Jim ProcterJAL-2325 apply license to new source files commit | commitdiff | tree | snapshot
2016-11-24 Jim ProcterJAL-2325 update release date to next Tuesday commit | commitdiff | tree | snapshot
2016-11-24 gmungocFileFormatI further tweaks, clean compile commit | commitdiff | tree | snapshot
2016-11-24 Jim ProcterJAL-2325 tidy up release notes commit | commitdiff | tree | snapshot
2016-11-23 Jim ProcterJAL-2325 remove 2.10.0 what’s new commit | commitdiff | tree | snapshot
2016-11-23 Jim ProcterJAL-2325 latest release to 2.10 commit | commitdiff | tree | snapshot
2016-11-23 Jim ProcterJAL-1738 Ctrl/Cmd/Alt modifiers and mention that B... commit | commitdiff | tree | snapshot
2016-11-23 Jim ProcterJAL-1738 hint about using the task switching key combin... commit | commitdiff | tree | snapshot
2016-11-23 Jim ProcterJAL-1738 mention Ctrl/Cmd/Alt modifiers and mention... commit | commitdiff | tree | snapshot
2016-11-23 Jim ProcterJAL-1738 mention Ctrl or Cmd for toggle behaviour in... commit | commitdiff | tree | snapshot
2016-11-23 Jim ProcterJAL-2325 updated what’s new for 2.10.1 commit | commitdiff | tree | snapshot
2016-11-23 Jim ProcterJAL-2325 reword ‘tame tooltip’ JAL-1723 release note commit | commitdiff | tree | snapshot
2016-11-23 Jim ProcterJAL-2325 rejig authors and add Kira commit | commitdiff | tree | snapshot
2016-11-23 Jim ProcterJAL-2282 JAL-2325 added link to help text from release... commit | commitdiff | tree | snapshot
2016-11-23 Jim ProcterJAL-2325 updated what’s new for 2.10.1 commit | commitdiff | tree | snapshot
2016-11-23 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... commit | commitdiff | tree | snapshot
2016-11-23 Jim ProcterJAL-2282 revised docs about warning message. commit | commitdiff | tree | snapshot
2016-11-23 gmungocJAL-1738 Spanish versions added commit | commitdiff | tree | snapshot
2016-11-23 Jim ProcterMerge branch 'documentation/JAL-2325_release2101' into... commit | commitdiff | tree | snapshot
2016-11-23 Jim ProcterJAL-2325 JAL-2332 release notes commit | commitdiff | tree | snapshot
2016-11-23 Jim ProcterMerge branch 'documentation/JAL-2325_release2101' into... commit | commitdiff | tree | snapshot
2016-11-23 Jim ProcterMerge branch 'bug/JAL-2323disulfideOverview' into develop commit | commitdiff | tree | snapshot
2016-11-23 Jim ProcterJAL-2325 moved disulphide/contact bug fixes (JAL-2323... commit | commitdiff | tree | snapshot
2016-11-23 Jim ProcterJAL-2325 release notes formatting commit | commitdiff | tree | snapshot
2016-11-23 Jim ProcterJAL-2325 release notes commit | commitdiff | tree | snapshot
2016-11-23 Jim ProcterMerge branch 'documentation/JAL-2325_release2101' into... commit | commitdiff | tree | snapshot
2016-11-23 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... commit | commitdiff | tree | snapshot
2016-11-23 Jim ProcterJAL-2325 release notes commit | commitdiff | tree | snapshot
2016-11-22 Jim ProcterJAL-2197 changed tooltip for Jnet annotation rows to... commit | commitdiff | tree | snapshot
2016-11-22 tcofoegbuMerge branch 'bug/JAL-2277_refactorPrintUnwrapped'... commit | commitdiff | tree | snapshot
2016-11-22 Jim ProcterMerge branch 'features/JAL-2177_update_jmol_to_14.6... commit | commitdiff | tree | snapshot
2016-11-22 Jim ProcterJAL-2325 update release date for 2.10.1
 commit | commitdiff | tree | snapshot
2016-11-22 Jim ProcterMerge branch 'develop' into documentation/JAL-2325_rele... commit | commitdiff | tree | snapshot
2016-11-22 gmungocJAL-2337 fix: only adjust once for scroll offset bug/JAL-2277_refactorPrintUnwrapped commit | commitdiff | tree | snapshot
2016-11-22 gmungocJAL-1919 JAL-2177 handle empty pdbentries list correctly features/JAL-2177_update_jmol_to_14.6.4_2016.10.26 commit | commitdiff | tree | snapshot
2016-11-22 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... commit | commitdiff | tree | snapshot
2016-11-22 tcofoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-11-22 tcofoegbuJAL-2322 added runnable interface to HTMLOutput class... commit | commitdiff | tree | snapshot
2016-11-22 Jim ProcterMerge branch 'features/JAL-1738_JAL-345_selectionfromhi... commit | commitdiff | tree | snapshot
2016-11-22 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... commit | commitdiff | tree | snapshot
2016-11-22 Jim ProcterJAL-1738 JAL-345 changed keystroke to ‘B’ (with modifie... commit | commitdiff | tree | snapshot
2016-11-22 gmungocJAL-2277 refactored AlignmentPanel.printUnwrapped to... commit | commitdiff | tree | snapshot
2016-11-21 tcofoegbuJAL-2277 bug fix for mis-alligned graphics output for... commit | commitdiff | tree | snapshot
2016-11-21 Jim ProcterJAL-2325 JAL-2118 2.10.0 patch in release note commit | commitdiff | tree | snapshot
2016-11-21 Jim ProcterJAL-2335 patched FeatureRendererModel.findFeaturesAtRes... bug/JAL-2323disulfideOverview commit | commitdiff | tree | snapshot
2016-11-21 Jim ProcterJAL-2335 failing test for FeatureRendererModel.findFeat... commit | commitdiff | tree | snapshot
2016-11-21 Jim ProcterMerge branch 'documentation/JAL-2325_release2101' into... commit | commitdiff | tree | snapshot
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