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2018-02-21 Jim ProcterJAL-2914 process #gff-version as a valid GFF3 pragma... patch/JAL-2914_relaxedGFFpragmas commit | commitdiff | tree | snapshot
2018-02-20 Jim ProcterMerge branch 'bugs/JAL-2780_JAL-2781_pdbnegativenums... commit | commitdiff | tree | snapshot
2018-02-15 Jim ProcterMerge branch 'develop' into releases/Release_2_10_4_Branch commit | commitdiff | tree | snapshot
2018-02-15 Jim ProcterJAL-2906 bump release version and cut new release note... commit | commitdiff | tree | snapshot
2018-02-13 Jim ProcterJAL-2780 scan all test IDs before testing and reporting... bugs/JAL-2780_JAL-2781_pdbnegativenums commit | commitdiff | tree | snapshot
2018-02-13 Jim ProcterJAL-2780 SequenceI.findFeatures takes column numbers... commit | commitdiff | tree | snapshot
2018-02-13 Jim ProcterJAL-2780 JAL-2781 don’t create a mapping if sequence... commit | commitdiff | tree | snapshot
2018-02-13 Jim ProcterJAL-2780 JAL-2781 only create a mapping entry or write... commit | commitdiff | tree | snapshot
2018-02-13 Jim ProcterJAL-2781 JAL-2780 include sequence start number when... commit | commitdiff | tree | snapshot
2018-02-13 Jim ProcterJAL-2781 ensure Trim is disabled before test starts commit | commitdiff | tree | snapshot
2018-02-13 Jim ProcterJAL-2781 refactor ‘trim retrieved sequence’ preference... commit | commitdiff | tree | snapshot
2018-02-13 Jim ProcterJAL-2781 null local siftsClient variable if exception... commit | commitdiff | tree | snapshot
2018-02-13 Jim ProcterJAL-2781 refactor StructureSelectionManager.siftsClient... commit | commitdiff | tree | snapshot
2018-02-13 Jim ProcterJAL-2781 FIXME: value of sourceType parameter always... commit | commitdiff | tree | snapshot
2018-02-13 Jim ProcterJAL-2781 refactor possibly non-functional ‘extract... commit | commitdiff | tree | snapshot
2018-02-13 Jim ProcterJAL-2781 tidy up comments on getMapping/computeMapping commit | commitdiff | tree | snapshot
2018-02-13 Jim ProcterJAL-2781 report exactly which residues do not receive... commit | commitdiff | tree | snapshot
2018-02-13 Jim ProcterJAL-2905 added additional jvmarg for testng task condit... commit | commitdiff | tree | snapshot
2018-02-12 Jim ProcterJAL-2780 JAL-2781 extra column in mapping array commit | commitdiff | tree | snapshot
2018-02-12 Jim ProcterJAL-2904 JAL-2780 JAL-2781 update JmolCommandsTest... commit | commitdiff | tree | snapshot
2018-02-12 Jim ProcterJAL-2780 JAL-2781 ahem - add a semicolon if there isn... commit | commitdiff | tree | snapshot
2018-02-12 Jim ProcterJAL-2780 use value of ’UNASSIGNED’ constant in assert... commit | commitdiff | tree | snapshot
2018-02-12 Jim ProcterJAL-2904 replaced assert for (getEnd()-getStart()+1... commit | commitdiff | tree | snapshot
2018-02-11 Jim ProcterJAL-2781 use SIFTs mapping rather than maxChain AlignSe... commit | commitdiff | tree | snapshot
2018-02-11 Jim ProcterJAL-2780 JAL-2781 use PDBe numbering to map between... commit | commitdiff | tree | snapshot
2018-02-11 Jim ProcterJAL-2781 mark aligned positions via StructureMapping... commit | commitdiff | tree | snapshot
2018-02-11 Jim ProcterJAL-2780 JAL-2781 include a Mapping object in Structure... commit | commitdiff | tree | snapshot
2018-02-11 Jim ProcterJAL-2780 JAL-2781 UNASSIGNED positions marked as Intege... commit | commitdiff | tree | snapshot
2018-02-11 Jim ProcterJAL-2781 fix test data for full length annotation commit | commitdiff | tree | snapshot
2018-02-09 Jim ProcterUse the “PDBe” or “PDB” numbering (starts from 1, corre... commit | commitdiff | tree | snapshot
2018-02-09 Jim ProcterJAL-2780 JAL-2781 should always ensure SIFTS mappings... commit | commitdiff | tree | snapshot
2018-02-07 Jim ProcterJAL-2780 JAL-2781 run sequentially and ensure windows... commit | commitdiff | tree | snapshot
2018-02-07 Jim ProcterJAL-2780 JAL-2891 clear all windows always beforeTest... commit | commitdiff | tree | snapshot
2018-02-07 Jim ProcterJAL-2902 catch case where viewer is closed (therefore... commit | commitdiff | tree | snapshot
2018-02-07 Jim ProcterJAL-2902 thread off dialog close op to avoid deadlock... commit | commitdiff | tree | snapshot
2018-02-07 Jim ProcterJAL-2780 JAL-2781 first pass at failing test for incorr... commit | commitdiff | tree | snapshot
2018-02-07 Jim ProcterJAL-2780 JAL-2781 JAL-2902 refactored helper method... commit | commitdiff | tree | snapshot
2018-02-07 Jim ProcterJAL-2902 - isBusy and hasMapping methods so client... commit | commitdiff | tree | snapshot
2018-02-07 Jim ProcterJAL-2780 JAL-2781 fix javadoc in line with behaviour... commit | commitdiff | tree | snapshot
2018-02-07 Jim ProcterJAL-2780 JAL-2781 JAL-2902 refactor ‘OK’ action to... commit | commitdiff | tree | snapshot
2018-02-07 Jim ProcterJAL-2780 JAL-2781 don’t assume contiguous mapping to... commit | commitdiff | tree | snapshot
2018-02-05 Jim ProcterJAL-2780 JAL-2781 (failing) test comparing location... commit | commitdiff | tree | snapshot
2018-02-05 Jim ProcterJAL-2780 JAL-2781 programmatically select structures... commit | commitdiff | tree | snapshot
2018-02-05 Jim ProcterJAL-2780 JAL-2871 only look up current table view once commit | commitdiff | tree | snapshot
2018-02-05 Jim ProcterJAL-2780 JAL-2781 test AlignmentI.findAnnotations locat... commit | commitdiff | tree | snapshot
2018-02-05 Jim ProcterJAL-2780 JAL-2781 - patch and first test for AlignmentI... commit | commitdiff | tree | snapshot
2018-01-26 Jim ProcterMerge branch 'releases/Release_2_10_3_Branch' into... commit | commitdiff | tree | snapshot
2018-01-24 Jim ProcterMerge branch 'develop' into releases/Release_2_10_3_Branch releases/Release_2_10_3_Branch Release_2_10_3b1 commit | commitdiff | tree | snapshot
2018-01-24 Jim ProcterJAL-2858 update release date and rejig what's new message commit | commitdiff | tree | snapshot
2018-01-23 Jim ProcterMerge branch 'develop' into releases/Release_2_10_3_Branch commit | commitdiff | tree | snapshot
2018-01-23 Jim ProcterJAL-2858 fix what's new commit | commitdiff | tree | snapshot
2018-01-23 Jim ProcterMerge branch 'develop' into releases/Release_2_10_3_Branch commit | commitdiff | tree | snapshot
2018-01-23 Jim ProcterJAL-2858 update latest release notes link in TOC commit | commitdiff | tree | snapshot
2018-01-23 Jim ProcterJAL-2859 release notes commit | commitdiff | tree | snapshot
2018-01-23 Jim ProcterJAL-2858 update release notes commit | commitdiff | tree | snapshot
2018-01-22 Jim ProcterMerge branch 'develop' into releases/Release_2_10_3_Branch commit | commitdiff | tree | snapshot
2018-01-22 Jim ProcterJAL-2858 release notes for 2.10.3b1 (including revision... commit | commitdiff | tree | snapshot
2018-01-22 Jim ProcterJAL-2858 bump version number for 2.10.3b1 commit | commitdiff | tree | snapshot
2018-01-18 gmungocJAL-2810 JAL-2886 i18n commit | commitdiff | tree | snapshot
2018-01-18 gmungocJAL-2679 update query id to actual case of retrieved... commit | commitdiff | tree | snapshot
2018-01-17 gmungocJAL-2679 case-insensitive comparison of query and retri... commit | commitdiff | tree | snapshot
2018-01-16 gmungocJAL-2679 use object_type=Transcript for lookup of Paren... commit | commitdiff | tree | snapshot
2018-01-12 kiramtJAL-2886 trivial unit test fix commit | commitdiff | tree | snapshot
2018-01-11 kiramtMerge remote-tracking branch 'origin/task/JAL-2662... commit | commitdiff | tree | snapshot
2018-01-11 kiramtJAL-2662 Updated README task/JAL-2662 commit | commitdiff | tree | snapshot
2017-12-19 Jim ProcterJAL-2880 disabled non-functional test - Jmol parser... commit | commitdiff | tree | snapshot
2017-12-01 Jim ProcterMerge branch 'develop' into bugs/JAL-2780_JAL-2781_pdbn... commit | commitdiff | tree | snapshot
2017-11-30 Jim ProcterJAL-2858 tweak OSX specific jar resources in JNLP commit | commitdiff | tree | snapshot
2017-11-30 Jim ProcterMerge branch 'develop' into releases/Release_2_10_3_Branch commit | commitdiff | tree | snapshot
2017-11-30 Jim ProcterJAL-2849 release notes commit | commitdiff | tree | snapshot
2017-11-30 Jim ProcterMerge branch 'bug/JAL-2849' into develop commit | commitdiff | tree | snapshot
2017-11-30 Jim ProcterJAL-2849 JAL-2863 file format preferences TODO
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2017-11-30 Jim ProcterJAL-2849 fix commit | commitdiff | tree | snapshot
2017-11-28 Jim ProcterMerge branch 'bug/JAL-2859_uniprottowrongpdbid' into... commit | commitdiff | tree | snapshot
2017-11-28 Jim ProcterJAL-2740 release notes commit | commitdiff | tree | snapshot
2017-11-28 Jim ProcterMerge branch 'bug/JAL-2740' into develop commit | commitdiff | tree | snapshot
2017-11-28 Jim ProcterJAL-2827 release notes commit | commitdiff | tree | snapshot
2017-11-28 Jim ProcterMerge branch 'bug/JAL-2827' into develop commit | commitdiff | tree | snapshot
2017-11-28 Jim ProcterJAL-2842 release notes commit | commitdiff | tree | snapshot
2017-11-28 Jim ProcterMerge branch 'bug/JAL-2842' into develop commit | commitdiff | tree | snapshot
2017-11-27 Jim ProcterJAL-2859 disambiguate with PDB ID if no file path bug/JAL-2859_uniprottowrongpdbid commit | commitdiff | tree | snapshot
2017-11-27 Jim ProcterJAL-2859 failing test demonstrating sequences with... commit | commitdiff | tree | snapshot
2017-11-27 Jim ProcterMerge branch 'develop' into releases/Release_2_10_3_Branch commit | commitdiff | tree | snapshot
2017-11-27 Jim ProcterJAL-2851 JAL-2858 release notes for 2.10.3b1 commit | commitdiff | tree | snapshot
2017-11-27 Jim ProcterMerge branch 'develop' into releases/Release_2_10_3_Branch commit | commitdiff | tree | snapshot
2017-11-27 Jim ProcterMerge branch 'bug/JAL-2851' into develop commit | commitdiff | tree | snapshot
2017-11-23 kiramtMerge branch 'develop' into bug/JAL-2851 bug/JAL-2851 commit | commitdiff | tree | snapshot
2017-11-23 kiramtJAL-2851 Fix merge error breaking vertical scrolling commit | commitdiff | tree | snapshot
2017-11-20 Jim ProcterJAL-2698 only allow InstallAnywhere launches with versi... commit | commitdiff | tree | snapshot
2017-11-20 Jim ProcterJAL-2698 patch path for InstallAnywhere build. Webstart... commit | commitdiff | tree | snapshot
2017-11-17 Jim ProcterJAL-2698 tidy release notes and whats new commit | commitdiff | tree | snapshot
2017-11-17 Jim ProcterJAL-2698 source code licencing commit | commitdiff | tree | snapshot
2017-11-17 Jim ProcterJAL-2698 tidy up release notes commit | commitdiff | tree | snapshot
2017-11-17 Jim ProcterJAL-2698 Cached PDB Entries -> Cached Structures in... commit | commitdiff | tree | snapshot
2017-11-17 Jim ProcterJAL-2466 revised help text for sort by PID commit | commitdiff | tree | snapshot
2017-11-17 Jim ProcterJAL-2698 what’s new and release notes commit | commitdiff | tree | snapshot
2017-11-17 Jim ProcterJAL-2822 known defect for 2.10.3 commit | commitdiff | tree | snapshot
2017-11-17 Jim ProcterMerge branch 'bug/JAL-2784' into develop commit | commitdiff | tree | snapshot
2017-11-17 Jim ProcterJAL-2841 JAL-2791 new known defect

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2017-11-17 Jim ProcterJAL-2541 known defect commit | commitdiff | tree | snapshot
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