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2018-08-31 Jim ProcterJAL-2996 JAL-3053 ~ | : [] {} () treated as gap characters. patch/JAL-2996_JAL-3053_tildeBracketsPipesEtcAsGapChars commit | commitdiff | tree | snapshot
2018-08-31 Jim ProcterJAL-3095 account for sequence start when highlighting... commit | commitdiff | tree | snapshot
2018-08-31 Jim ProcterJAL-3053 JAL-3061 JAL-3095 release notes commit | commitdiff | tree | snapshot
2018-08-31 Jim ProcterMerge branch 'bug/JAL-3061_RNA_secondary_structure_anno... commit | commitdiff | tree | snapshot
2018-08-31 Jim ProcterMerge branch 'releases/Release_2_10_5_Branch' of source... commit | commitdiff | tree | snapshot
2018-08-31 Jim ProcterJAL-3095 release notes commit | commitdiff | tree | snapshot
2018-08-31 Jim Procterjava doc and fix for JAL-3095 - region of trimmed RNA... commit | commitdiff | tree | snapshot
2018-08-31 gmungocJAL-3003 remove redundant call to drawSelectionGroup commit | commitdiff | tree | snapshot
2018-08-30 Jim ProcterJAL-3092 release notes commit | commitdiff | tree | snapshot
2018-08-30 Jim ProcterJAL-3092 make sure base pair counter is always moved... commit | commitdiff | tree | snapshot
2018-08-29 Jim ProcterJAL-3091 release notes for JAL-3003 JAL-3059 commit | commitdiff | tree | snapshot
2018-08-28 Jim ProcterJAL-3003 different coloured borders in demo annotation... commit | commitdiff | tree | snapshot
2018-08-28 gmungocJAL-3059 use correct border colour for groups commit | commitdiff | tree | snapshot
2018-08-28 gmungocJAL-3003 draw selection group outline on main graphics... commit | commitdiff | tree | snapshot
2018-08-28 Jim ProcterJAL-247 release notes commit | commitdiff | tree | snapshot
2018-08-28 gmungocJAL-247 comment to clarify wrapped print algorithm commit | commitdiff | tree | snapshot
2018-08-28 gmungocJAL-247 print/export wrapped uses common code to draw... commit | commitdiff | tree | snapshot
2018-08-28 gmungocJAL-3087 include full alignment height in repeating... commit | commitdiff | tree | snapshot
2018-08-28 gmungocJAL-247 draw/print sequence ids now uses common code... commit | commitdiff | tree | snapshot
2018-08-28 Jim ProcterJAL-3091 release 2.10.5 added to release notes commit | commitdiff | tree | snapshot
2018-08-27 Ben SoaresJAL-3061 / JAL-3053 commit | commitdiff | tree | snapshot
2018-08-03 Ben SoaresJAL-3061 commit | commitdiff | tree | snapshot
2018-08-03 Ben SoaresMerge branch 'bug/JAL-3061_RNA_secondary_structure_anno... commit | commitdiff | tree | snapshot
2018-08-02 Ben SoaresJAL-3053 commit | commitdiff | tree | snapshot
2018-08-01 Jim ProcterMerge branch 'releases/Release_2_10_4_Branch' into... commit | commitdiff | tree | snapshot
2018-08-01 Jim ProcterMerge branch 'task/JAL-3047_clover2104b1_cherrypick... releases/Release_2_10_4_Branch commit | commitdiff | tree | snapshot
2018-08-01 Jim ProcterJAL-3047 don't set classes unconditionally (forgot... task/JAL-3047_clover2104b1_cherrypick commit | commitdiff | tree | snapshot
2018-08-01 Jim ProcterJAL-3047 don’t let the makedist task complete if a... commit | commitdiff | tree | snapshot
2018-08-01 Jim ProcterJAL-3047 ‘cloverclasses’ build directory for instrument... commit | commitdiff | tree | snapshot
2018-08-01 Jim ProcterJAL-3047 enable clover for testng commit | commitdiff | tree | snapshot
2018-08-01 Jim ProcterJAL-3047 ignore clover output dir commit | commitdiff | tree | snapshot
2018-07-31 bsoaresStockholm file for test commit | commitdiff | tree | snapshot
2018-07-30 bsoaresFixed bug ignoring "alpha" extended braces in RNA SS... commit | commitdiff | tree | snapshot
2018-06-07 Jim ProcterJAL-3009 release notes commit | commitdiff | tree | snapshot
2018-06-07 Jim ProcterMerge branch 'bugs/JAL-3009_blockingNetworkThreads... commit | commitdiff | tree | snapshot
2018-06-07 Jim ProcterJAL-2999 what's new and tweak release notes order commit | commitdiff | tree | snapshot
2018-06-07 gmungocJAL-2920 format/comment tidy commit | commitdiff | tree | snapshot
2018-06-07 gmungocJAL-2920 wrap description in <html/> if it includes... commit | commitdiff | tree | snapshot
2018-06-07 gmungocMerge branch 'releases/Release_2_10_4_Branch' of https... commit | commitdiff | tree | snapshot
2018-06-06 gmungocJAL-2920 unit tests for 3 or more original or variant... commit | commitdiff | tree | snapshot
2018-06-06 Jim ProcterJAL-2999 refine release notes commit | commitdiff | tree | snapshot
2018-06-06 Jim ProcterJAL-2999 release 2.10.4b1 on Thursday (promise!) commit | commitdiff | tree | snapshot
2018-06-06 Jim ProcterJAL-2920 release notes commit | commitdiff | tree | snapshot
2018-06-06 Jim ProcterMerge branch 'bug/JAL-2920_uniprotvariantfeature' into... commit | commitdiff | tree | snapshot
2018-06-06 Jim ProcterJAL-2920 revised TODO for JAL-3025 bug/JAL-2920_uniprotvariantfeature commit | commitdiff | tree | snapshot
2018-06-06 Jim ProcterJAL-2920 don’t output variant/original sequence as... commit | commitdiff | tree | snapshot
2018-06-06 Jim ProcterJAL-2920 JAL-3017 uniprot XML schema included in mappin... commit | commitdiff | tree | snapshot
2018-06-06 Jim ProcterJAL-1920 JAL-3017 use newline not <br/> in description... commit | commitdiff | tree | snapshot
2018-06-05 Jim ProcterJAL-3009 news reader thread should be in background... bugs/JAL-3009_blockingNetworkThreads commit | commitdiff | tree | snapshot
2018-06-05 Jim ProcterJAL-3009 Identifiers.Org retrieval on background thread. commit | commitdiff | tree | snapshot
2018-06-04 Jim ProcterJAL-3017 parse multiple variant elements for uniprot... commit | commitdiff | tree | snapshot
2018-06-04 Jim ProcterJAL-2999 update release notes and patch date to 5th... commit | commitdiff | tree | snapshot
2018-06-02 Jim ProcterJAL-3017 parse multiple variant elements for uniprot... commit | commitdiff | tree | snapshot
2018-05-30 Jim ProcterJAL-2999 2.10.4b1 release 31st May commit | commitdiff | tree | snapshot
2018-05-26 Jim ProcterJAL-2999 release date for 2.10.4b1 set for 27th May... commit | commitdiff | tree | snapshot
2018-05-25 Jim ProcterMerge branch 'documentation/JAL-2999_r2104b1' into... commit | commitdiff | tree | snapshot
2018-05-25 Jim ProcterMerge branch 'bug/JAL-2992panelHeight' into releases... commit | commitdiff | tree | snapshot
2018-05-25 Jim ProcterMerge branch 'bug/JAL-1460_dragndropWindows' into relea... commit | commitdiff | tree | snapshot
2018-05-25 gmungocJAL-2992 simpler heuristic for available height bug/JAL-2992panelHeight commit | commitdiff | tree | snapshot
2018-05-25 Jim ProcterMerge branch 'bug/JAL-2991_exporttosvgwrapview' into... commit | commitdiff | tree | snapshot
2018-05-25 Jim ProcterMerge branch 'feature/JAL-2994chimeraPath' into release... commit | commitdiff | tree | snapshot
2018-05-25 Jim ProcterJAL-1460 clarify release notes - and mention that short... commit | commitdiff | tree | snapshot
2018-05-25 Jim ProcterJAL-2994 add a few future release points for good measu... feature/JAL-2994chimeraPath commit | commitdiff | tree | snapshot
2018-05-25 Jim ProcterJAL-1460 temp variable for clearer conditional and... bug/JAL-1460_dragndropWindows commit | commitdiff | tree | snapshot
2018-05-25 Jim ProcterJAL-1460 javadoc commit | commitdiff | tree | snapshot
2018-05-25 gmungocJAL-2995 tooltip on fields with double-click to browse... commit | commitdiff | tree | snapshot
2018-05-25 gmungocJAL-2994 temporary patch with paths to Chimera for... commit | commitdiff | tree | snapshot
2018-05-24 Jim ProcterJAL-2999 issues resolved (or nearly so) for 2.10.4b1 commit | commitdiff | tree | snapshot
2018-05-24 gmungocJAL-2997 additional tests commit | commitdiff | tree | snapshot
2018-05-24 Jim ProcterJAL-1460 tidied up the use of windows link file parser commit | commitdiff | tree | snapshot
2018-05-24 Jim ProcterJAL-1460 more complete drag'n'drop debugging info and... commit | commitdiff | tree | snapshot
2018-05-24 Jim ProcterJAL-1460 process .lnk files dragged to Jalview when... commit | commitdiff | tree | snapshot
2018-05-24 Jim ProcterJAL-1460 new data flavor for URLs added belt-and-braces... commit | commitdiff | tree | snapshot
2018-05-23 gmungocJAL-2993 AlignFrame listen for keystrokes in OverviewPanel commit | commitdiff | tree | snapshot
2018-05-23 gmungocJAL-2997 unit test commit | commitdiff | tree | snapshot
2018-05-23 Jim Procterfix for JAL-2991 - we could do better :/ bug/JAL-2991_exporttosvgwrapview commit | commitdiff | tree | snapshot
2018-05-23 gmungocJAL-2997 handle tab-delimited trailing column number... commit | commitdiff | tree | snapshot
2018-05-23 Jim ProcterJAL-2999 release notes and version bump for jalview... commit | commitdiff | tree | snapshot
2018-05-23 Jim ProcterJAL-2895 replace $$Jalview-Version$$ in help.jhm with... commit | commitdiff | tree | snapshot
2018-05-21 gmungocJAL-2920 use HGVS notation for protein variant feature commit | commitdiff | tree | snapshot
2018-05-10 Jim ProcterJAL-2920 release notes Release_2_10_4 commit | commitdiff | tree | snapshot
2018-05-10 Jim ProcterMerge branch 'bug/JAL-2920_uniprotvariantfeature' into... commit | commitdiff | tree | snapshot
2018-05-10 Jim ProcterJAL-2920 basic test for Description from features with... commit | commitdiff | tree | snapshot
2018-05-10 Jim ProcterJAL-2920 simplified logic and added corner cases for... commit | commitdiff | tree | snapshot
2018-05-09 Jim ProcterJAL-2906 update release date and release notes commit | commitdiff | tree | snapshot
2018-05-09 Jim ProcterJAL-2931 patch IA paths for new build box commit | commitdiff | tree | snapshot
2018-05-09 gmungocJAL-2984 add pdb as sequence(s) if associate structure... commit | commitdiff | tree | snapshot
2018-05-09 Jim ProcterMerge branch 'patch/JAL-2976_vaqua4_fallback' into... commit | commitdiff | tree | snapshot
2018-05-09 Jim ProcterJAL-2976 fixed bad equivalence check and implemented... commit | commitdiff | tree | snapshot
2018-05-08 Jim ProcterJAL-2321 release notes commit | commitdiff | tree | snapshot
2018-05-08 Jim ProcterMerge branch 'patch/JAL-2321_addsecstrForDroppedPDBFile... commit | commitdiff | tree | snapshot
2018-05-07 Jim ProcterJAL-2321 patch test to ensure structures are actually... patch/JAL-2321_addsecstrForDroppedPDBFile commit | commitdiff | tree | snapshot
2018-05-07 Jim ProcterJAL-2321 ensure default is ‘parseImmediately=true’ commit | commitdiff | tree | snapshot
2018-05-07 Jim ProcterJAL-2321 use configured values for structure derived... commit | commitdiff | tree | snapshot
2018-05-07 Jim ProcterJAL-2321 add secondary structure & temp factor if not... commit | commitdiff | tree | snapshot
2018-05-07 Jim ProcterJAL-2321 use StructureImportSettings singleton settings... commit | commitdiff | tree | snapshot
2018-05-07 Jim ProcterJAL-2321 isParseImmediately() allows the parse() method... commit | commitdiff | tree | snapshot
2018-05-07 Jim ProcterJAL-2321 allow JmolParser to be configured before parsi... commit | commitdiff | tree | snapshot
2018-05-07 Jim ProcterJAL-2906 apply GPLv3 license source commit | commitdiff | tree | snapshot
2018-05-07 Jim ProcterJAL-2960 don’t override a swing method and create infin... commit | commitdiff | tree | snapshot
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