jalview.git
2020-09-17 Jim ProcterJAL-3675 release notes for JAL-3750 JAL-3751 Release_2_11_1_1
2020-09-17 Jim ProcterMerge branch 'patch/JAL-3750_JAL-3741_https_patch'...
2020-09-17 Jim ProcterJAL-3741 http to https (and jar to jvp for exampleFile...
2020-09-17 Jim ProcterJAL-3750 parse protocol before checking if argument...
2020-09-17 Jim ProcterJAL-3675 patch release date 17th September 2020
2020-09-15 Jim ProcterJAL-3675 logged JAL-3748 as known defect
2020-09-15 Jim ProcterJAL-3765 JAL-3718 release notes
2020-09-15 Jim ProcterMerge branch 'patch/JAL-3718_fixed_getdown_patched_for_...
2020-09-15 Ben SoaresJAL-3718 Fixed getdown auto-update. This commit Getdown...
2020-09-15 Ben SoaresJAL-3718 force re-initialise of getdown.txt file when...
2020-09-15 Jim ProcterJAL-3675 typo in release notes :(
2020-09-15 Jim ProcterJAL-3675 update release date and release notes for...
2020-09-03 gmungocJAL-3648 resize annotation panel after dragging to...
2020-09-03 Jim ProcterJAL-3675 update release date and release notes for...
2020-09-03 Jim ProcterMerge branch 'improvement/JAL-3280_Migrate_the_VersionC...
2020-09-03 Jim ProcterJAL-3675 whats new, logging and release notes tidying...
2020-09-03 Jim ProcterJAL-3676 rework logging docs.
2020-09-03 Jim ProcterMerge branch 'bug/JAL-3718_Getdown_does_not_autoupdate_...
2020-09-03 Jim ProcterJAL-3676 remove mention of Castor
2020-09-03 Jim ProcterJAL-3675 tweak release notes for JAL-3667, JAL-3702
2020-09-03 Jim ProcterJAL-3675 update sequence fetcher service documentation...
2020-09-02 Ben SoaresJAL-3280 Test for remote release build_properties file... improvement/JAL-3280_Migrate_the_VersionChecker_service_to_build_properties
2020-09-01 Ben SoaresJAL-3280 fixes after CR-JAL-241. Now only checking...
2020-08-31 Ben SoaresJAL-3280 Pass appbase and appdir from getdown to jalvew...
2020-08-31 Jim ProcterJAL-3680 merged description of individual cursor key...
2020-08-31 Jim ProcterJAL-3732 - sequences can be moved up/down in cursor...
2020-08-28 Ben SoaresJAL-3676 adding Axis and Castor loggging properties...
2020-08-27 Ben SoaresJAL-3676 Documentation in Help for Java Console, Loggin...
2020-08-27 Ben SoaresMerge branch 'releases/Release_2_11_1_Branch' into... merge/JAL_1842+JAL-3509+releases_Release_2_11_1_Branch
2020-08-25 Jim Procterreport JAL-3127 as known defect (fix targeted for 2...
2020-08-25 Jim ProcterJAL-3671 hardwire log4j.root logger to INFO to supress...
2020-08-21 Jim ProcterJAL-3675 2.11.1.1 java 8 compatible patch for JAL-3615...
2020-08-18 Ben SoaresJAL-3718 Added digestonly key to getdown.txt to copy...
2020-08-18 gmungocJAL-3692 parse multiline CDS location correctly
2020-08-18 Ben SoaresJAL-3676 Start of documentation in help pages logging...
2020-08-17 Jim ProcterJAL-3675 release notes for JAL-3691
2020-08-17 Jim ProcterMerge branch 'patch/JAL-3691_No_score_models_available...
2020-08-17 Jim ProcterJAL-3675 JAL-3561 documented in release notes
2020-08-17 Jim ProcterJAL-3675 report JAL-3702 as known defect
2020-08-17 Jim ProcterMerge branch 'patch/JAL-3561_JAL-3660_fileformatexport_...
2020-08-17 Jim ProcterJAL-3712 fix typos for rebuilding/updating getdown...
2020-08-17 Jim ProcterJAL-3490 JAL-3675 release notes, update Find dialog...
2020-08-17 Jim ProcterMerge branch 'patch/Release_2_11_1_Branch_patch_JAL...
2020-08-17 Jim ProcterJAL-3675 JAL-3597 release notes
2020-08-17 Jim ProcterMerge branch 'patch/JAL-3597_for_Release_2_11_1_Branch...
2020-08-14 Ben SoaresJAL-3676 More explicit tooltip about resetting log...
2020-08-13 Ben SoaresJAL-3597 Increased heap passmark to <= 45MB and report...
2020-08-13 gmungocJAL-3597 slight tidying of code and Javadoc, passmark...
2020-08-13 gmungocJAL-3597 additional references nulled, bug in test...
2020-08-13 Jim ProcterJAL-3675 brought forward patch to build.gradle for...
2020-08-13 Jim ProcterMerge branch 'releases/Release_2_11_1_Branch' of source...
2020-08-12 Ben SoaresJAL-3676 Removed BACKUPFILESPRESETENTRY logging for...
2020-08-12 Jim ProcterJAL-3675 added JAL-3576 as known defect (colocated...
2020-08-12 Ben SoaresJAL-3608 Changes from code review CR-JAL-236
2020-08-11 Jim ProcterJAL-3675 fix issue attribution for JAL-3667 release...
2020-08-11 Jim ProcterJAL-3675 update release notes for JAL-3673 and tested...
2020-08-11 Jim ProcterJAL-3673 make sure font metrics are updated if dealing...
2020-08-11 Jim ProcterMerge branch 'bug/JAL-2983negativeSliderMin' into relea...
2020-08-11 gmungocJAL-3371 more fine-grained slider; set Param slider... bug/JAL-2983negativeSliderMin
2020-08-10 gmungocJAL-3490 match count independent of contiguous matches... patch/Release_2_11_1_Branch_patch_JAL-3490
2020-08-10 Jim ProcterJAL-3691 toUpperCase(Locale.ROOT) for all standard...
2020-08-10 Jim ProcterMerge branch 'releases/Release_2_11_1_Branch' into...
2020-08-10 Jim ProcterJAL-3628 JAL-3708 call Cache.initLogger() before using...
2020-08-05 Ben SoaresJAL-3691 Changed .toUppoerCase().startsWith(...) to...
2020-08-05 Jim ProcterJAL-3628 init log after loading testProps for each...
2020-08-05 Jim ProcterMerge branch 'patch/JAL-3692enaEndpointFlatfile' into...
2020-08-05 gmungocJAL-3692 unit test updated for ?gzip download endpoint URL patch/JAL-3692enaEndpointFlatfile
2020-08-05 gmungocJAL-3692 parse multiline feature qualifiers and escaped...
2020-08-05 Jim ProcterJAL-3675 release notes for JAL-3477, JAL-3667, JAL...
2020-08-05 Jim ProcterMerge branch 'merge/JAL-3628+JAL-3608+JAL-3609+JAL...
2020-08-04 Ben SoaresJAL-3477 Improved command line arguments description...
2020-08-04 Ben SoaresJAL-3477 Added -help text for jvmmempc and jvmmemmax...
2020-08-04 Ben SoaresJAL-3477 added help documentation for executable jar...
2020-08-03 Jim ProcterJAL-3675 report JAL-3701 as known defect
2020-08-03 Jim ProcterJAL-3675 release notes for JAL-3692
2020-08-03 Jim ProcterMerge branch 'patch/JAL-3692enaEndpointFlatfile' into...
2020-08-03 Jim ProcterJAL-3692 fix up test for 2.11.1 series datamodel API
2020-08-03 gmungocJAL-3692 set CDS /product as EMBLCDSPROTEIN description
2020-08-03 gmungocJAL-3692 refactor/complete parsing, more unit test...
2020-08-03 gmungocJAL-3692 parse DE for description, and other refactoring...
2020-08-03 gmungocJAL-3692 URL tests updated
2020-08-03 gmungocJAL-3692 unit test (J03321), fixes, dbrefs; todo: prote...
2020-08-03 gmungocJAL-3692 EMBL flatfile fetcher / parser (todo: CDS...
2020-07-31 Ben SoaresMerge branch 'releases/Release_2_11_1_Branch' into...
2020-07-29 Jim ProcterMerge branch 'bug/JAL-2983negativeSliderMin' into relea...
2020-07-29 Jim ProcterJAL-3371 JAL-2983 don't modify 'extent' of slider ...
2020-07-29 Jim ProcterJAL-3675 mention -open argument in the command line...
2020-07-29 Jim ProcterJAL-3675 JAL-3570 JAL-3608 JAL-2983 release notes and...
2020-07-28 Jim ProcterJAL-3675 update release note for JAL-2656
2020-07-28 Jim ProcterJAL-2656 recognise non-HTTP URI input streams as gzippe...
2020-07-28 Jim ProcterJAL-2656 recognise Gzipped file input streams by their...
2020-07-28 Jim ProcterJAL-3615 update tests for Rfam/Pfam specific gzip endpoints
2020-07-27 Jim ProcterJAL-3675 release notes for JAL-3615 and JAL-2656
2020-07-27 gmungocJAL-2656 JAL-3615 check response headers to test for...
2020-07-27 gmungocJAL-3615 used gzip endpoints for Pfam and Rfam
2020-07-27 Jim ProcterMerge branch 'bug/JAL-2983negativeSliderMin' into relea...
2020-07-27 Jim ProcterJAL-3675 release notes for JAL-3621
2020-07-27 gmungocJAL-3621 corrected sequence feature sort and test
2020-07-27 gmungocJAL-3621 update to intervalstore v1.1
2020-07-27 Jim ProcterJAL-3675 release notes for JAL-3695 JAL-3696 JAL-3697
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