-Clazz.declarePackage ("jalview.appletgui");
-Clazz.load (["awt2swing.Panel", "$.Button", "$.Checkbox", "$.Scrollbar", "$.TextField"], "jalview.appletgui.AnnotationRowFilter", ["jalview.util.MessageManager", "java.lang.Float", "java.util.Vector"], function () {
-c$ = Clazz.decorateAsClass (function () {
-this.av = null;
-this.ap = null;
-this.annmap = null;
-this.enableSeqAss = false;
-this.currentAnnotation = null;
-this.adjusting = false;
-this.currentColours = null;
-this.minColour = null;
-this.maxColour = null;
-this.seqAssociated = null;
-this.thresholdIsMin = null;
-this.slider = null;
-this.thresholdValue = null;
-this.frame = null;
-this.ok = null;
-this.cancel = null;
-this.sliderDragging = false;
-Clazz.instantialize (this, arguments);
-}, jalview.appletgui, "AnnotationRowFilter", awt2swing.Panel);
-Clazz.prepareFields (c$, function () {
-this.currentColours = new awt2swing.Checkbox ();
-this.minColour = new awt2swing.Panel ();
-this.maxColour = new awt2swing.Panel ();
-this.seqAssociated = new awt2swing.Checkbox ();
-this.thresholdIsMin = new awt2swing.Checkbox ();
-this.slider = new awt2swing.Scrollbar (0);
-this.thresholdValue = new awt2swing.TextField (20);
-this.ok = new awt2swing.Button ();
-this.cancel = new awt2swing.Button ();
-});
-Clazz.makeConstructor (c$,
-function (av, ap) {
-Clazz.superConstructor (this, jalview.appletgui.AnnotationRowFilter, []);
-this.av = av;
-this.ap = ap;
-}, "jalview.appletgui.AlignViewport,jalview.appletgui.AlignmentPanel");
-Clazz.makeConstructor (c$,
-function () {
-Clazz.superConstructor (this, jalview.appletgui.AnnotationRowFilter, []);
-});
-Clazz.defineMethod (c$, "getAnnotationItems",
-function (isSeqAssociated) {
-var list = new java.util.Vector ();
-var index = 1;
-var anmap = Clazz.newIntArray (this.av.getAlignment ().getAlignmentAnnotation ().length, 0);
-for (var i = 0; i < this.av.getAlignment ().getAlignmentAnnotation ().length; i++) {
-if (this.av.getAlignment ().getAlignmentAnnotation ()[i].sequenceRef == null) {
-if (isSeqAssociated) {
-continue;
-}} else {
-this.enableSeqAss = true;
-}var label = this.av.getAlignment ().getAlignmentAnnotation ()[i].label;
-if (!list.contains (label)) {
-anmap[list.size ()] = i;
-list.add (label);
-} else {
-if (!isSeqAssociated) {
-anmap[list.size ()] = i;
-list.add (label + "_" + (index++));
-}}}
-this.annmap = Clazz.newIntArray (list.size (), 0);
-System.arraycopy (anmap, 0, this.annmap, 0, this.annmap.length);
-return list;
-}, "~B");
-Clazz.defineMethod (c$, "getSelectedThresholdItem",
-function (indexValue) {
-var selectedThresholdItem = -1;
-if (indexValue == 1) {
-selectedThresholdItem = 1;
-} else if (indexValue == 2) {
-selectedThresholdItem = 0;
-}return selectedThresholdItem;
-}, "~N");
-Clazz.defineMethod (c$, "modelChanged",
-function () {
-this.seqAssociated.setEnabled (this.enableSeqAss);
-});
-Clazz.defineMethod (c$, "ok_actionPerformed",
-function (e) {
-this.updateView ();
-this.frame.setVisible (false);
-}, "java.awt.event.ActionEvent");
-Clazz.defineMethod (c$, "cancel_actionPerformed",
-function (e) {
-this.reset ();
-this.ap.paintAlignment (true);
-this.frame.setVisible (false);
-}, "java.awt.event.ActionEvent");
-Clazz.defineMethod (c$, "thresholdCheck_actionPerformed",
-function (e) {
-this.updateView ();
-}, "java.awt.event.ActionEvent");
-Clazz.defineMethod (c$, "annotations_actionPerformed",
-function (e) {
-this.updateView ();
-}, "java.awt.event.ActionEvent");
-Clazz.defineMethod (c$, "threshold_actionPerformed",
-function (e) {
-this.updateView ();
-}, "java.awt.event.ActionEvent");
-Clazz.defineMethod (c$, "thresholdValue_actionPerformed",
-function (e) {
-try {
-var f = Float.parseFloat (this.thresholdValue.getText ());
-this.slider.setValue (Clazz.floatToInt (f * 1000));
-this.updateView ();
-} catch (ex) {
-if (Clazz.exceptionOf (ex, NumberFormatException)) {
-} else {
-throw ex;
-}
-}
-}, "java.awt.event.ActionEvent");
-Clazz.defineMethod (c$, "populateThresholdComboBox",
-function (threshold) {
-threshold.addItem (jalview.util.MessageManager.getString ("label.threshold_feature_no_thereshold"));
-threshold.addItem (jalview.util.MessageManager.getString ("label.threshold_feature_above_thereshold"));
-threshold.addItem (jalview.util.MessageManager.getString ("label.threshold_feature_below_thereshold"));
-}, "awt2swing.Choice");
-Clazz.defineMethod (c$, "getCurrentAnnotation",
-function () {
-return this.currentAnnotation;
-});
-Clazz.defineMethod (c$, "setCurrentAnnotation",
-function (currentAnnotation) {
-this.currentAnnotation = currentAnnotation;
-}, "jalview.datamodel.AlignmentAnnotation");
-});
+Clazz.declarePackage ("jalview.appletgui");\r
+Clazz.load (["awt2swing.Panel", "$.Button", "$.Checkbox", "$.Scrollbar", "$.TextField"], "jalview.appletgui.AnnotationRowFilter", ["jalview.util.MessageManager", "java.lang.Float", "java.util.Vector"], function () {\r
+c$ = Clazz.decorateAsClass (function () {\r
+this.av = null;\r
+this.ap = null;\r
+this.annmap = null;\r
+this.enableSeqAss = false;\r
+this.currentAnnotation = null;\r
+this.adjusting = false;\r
+this.currentColours = null;\r
+this.minColour = null;\r
+this.maxColour = null;\r
+this.seqAssociated = null;\r
+this.thresholdIsMin = null;\r
+this.slider = null;\r
+this.thresholdValue = null;\r
+this.frame = null;\r
+this.ok = null;\r
+this.cancel = null;\r
+this.sliderDragging = false;\r
+Clazz.instantialize (this, arguments);\r
+}, jalview.appletgui, "AnnotationRowFilter", awt2swing.Panel);\r
+Clazz.prepareFields (c$, function () {\r
+this.currentColours = new awt2swing.Checkbox ();\r
+this.minColour = new awt2swing.Panel ();\r
+this.maxColour = new awt2swing.Panel ();\r
+this.seqAssociated = new awt2swing.Checkbox ();\r
+this.thresholdIsMin = new awt2swing.Checkbox ();\r
+this.slider = new awt2swing.Scrollbar (0);\r
+this.thresholdValue = new awt2swing.TextField (20);\r
+this.ok = new awt2swing.Button ();\r
+this.cancel = new awt2swing.Button ();\r
+});\r
+Clazz.makeConstructor (c$, \r
+function (av, ap) {\r
+Clazz.superConstructor (this, jalview.appletgui.AnnotationRowFilter, []);\r
+this.av = av;\r
+this.ap = ap;\r
+}, "jalview.appletgui.AlignViewport,jalview.appletgui.AlignmentPanel");\r
+Clazz.makeConstructor (c$, \r
+function () {\r
+Clazz.superConstructor (this, jalview.appletgui.AnnotationRowFilter, []);\r
+});\r
+Clazz.defineMethod (c$, "getAnnotationItems", \r
+function (isSeqAssociated) {\r
+var list = new java.util.Vector ();\r
+var index = 1;\r
+var anmap = Clazz.newIntArray (this.av.getAlignment ().getAlignmentAnnotation ().length, 0);\r
+for (var i = 0; i < this.av.getAlignment ().getAlignmentAnnotation ().length; i++) {\r
+if (this.av.getAlignment ().getAlignmentAnnotation ()[i].sequenceRef == null) {\r
+if (isSeqAssociated) {\r
+continue;\r
+}} else {\r
+this.enableSeqAss = true;\r
+}var label = this.av.getAlignment ().getAlignmentAnnotation ()[i].label;\r
+if (!list.contains (label)) {\r
+anmap[list.size ()] = i;\r
+list.add (label);\r
+} else {\r
+if (!isSeqAssociated) {\r
+anmap[list.size ()] = i;\r
+list.add (label + "_" + (index++));\r
+}}}\r
+this.annmap = Clazz.newIntArray (list.size (), 0);\r
+System.arraycopy (anmap, 0, this.annmap, 0, this.annmap.length);\r
+return list;\r
+}, "~B");\r
+Clazz.defineMethod (c$, "getSelectedThresholdItem", \r
+function (indexValue) {\r
+var selectedThresholdItem = -1;\r
+if (indexValue == 1) {\r
+selectedThresholdItem = 1;\r
+} else if (indexValue == 2) {\r
+selectedThresholdItem = 0;\r
+}return selectedThresholdItem;\r
+}, "~N");\r
+Clazz.defineMethod (c$, "modelChanged", \r
+function () {\r
+this.seqAssociated.setEnabled (this.enableSeqAss);\r
+});\r
+Clazz.defineMethod (c$, "ok_actionPerformed", \r
+function (e) {\r
+this.updateView ();\r
+this.frame.setVisible (false);\r
+}, "java.awt.event.ActionEvent");\r
+Clazz.defineMethod (c$, "cancel_actionPerformed", \r
+function (e) {\r
+this.reset ();\r
+this.ap.paintAlignment (true);\r
+this.frame.setVisible (false);\r
+}, "java.awt.event.ActionEvent");\r
+Clazz.defineMethod (c$, "thresholdCheck_actionPerformed", \r
+function (e) {\r
+this.updateView ();\r
+}, "java.awt.event.ActionEvent");\r
+Clazz.defineMethod (c$, "annotations_actionPerformed", \r
+function (e) {\r
+this.updateView ();\r
+}, "java.awt.event.ActionEvent");\r
+Clazz.defineMethod (c$, "threshold_actionPerformed", \r
+function (e) {\r
+this.updateView ();\r
+}, "java.awt.event.ActionEvent");\r
+Clazz.defineMethod (c$, "thresholdValue_actionPerformed", \r
+function (e) {\r
+try {\r
+var f = Float.parseFloat (this.thresholdValue.getText ());\r
+this.slider.setValue (Clazz.floatToInt (f * 1000));\r
+this.updateView ();\r
+} catch (ex) {\r
+if (Clazz.exceptionOf (ex, NumberFormatException)) {\r
+} else {\r
+throw ex;\r
+}\r
+}\r
+}, "java.awt.event.ActionEvent");\r
+Clazz.defineMethod (c$, "populateThresholdComboBox", \r
+function (threshold) {\r
+threshold.addItem (jalview.util.MessageManager.getString ("label.threshold_feature_no_thereshold"));\r
+threshold.addItem (jalview.util.MessageManager.getString ("label.threshold_feature_above_thereshold"));\r
+threshold.addItem (jalview.util.MessageManager.getString ("label.threshold_feature_below_thereshold"));\r
+}, "awt2swing.Choice");\r
+Clazz.defineMethod (c$, "getCurrentAnnotation", \r
+function () {\r
+return this.currentAnnotation;\r
+});\r
+Clazz.defineMethod (c$, "setCurrentAnnotation", \r
+function (currentAnnotation) {\r
+this.currentAnnotation = currentAnnotation;\r
+}, "jalview.datamodel.AlignmentAnnotation");\r
+});\r
git://source.jalview.org / jalviewjs.git / blobdiff