-Clazz.declarePackage ("jalview.util");\r
-Clazz.load (["java.util.HashMap"], "jalview.util.DBRefUtils", ["jalview.datamodel.DBRefEntry", "$.DBRefSource", "$.PDBEntry", "jalview.jsdev.RegExp", "java.util.ArrayList", "$.Hashtable"], function () {\r
-c$ = Clazz.declareType (jalview.util, "DBRefUtils");\r
-c$.selectRefs = Clazz.defineMethod (c$, "selectRefs", \r
-function (dbrefs, sources) {\r
-if (dbrefs == null) {\r
-return null;\r
-}if (sources == null) {\r
-return dbrefs;\r
-}var srcs = new java.util.HashMap ();\r
-var res = new java.util.ArrayList ();\r
-for (var i = 0; i < sources.length; i++) {\r
-srcs.put ( String.instantialize (sources[i]), new Integer (i));\r
-}\r
-for (var i = 0, j = dbrefs.length; i < j; i++) {\r
-if (srcs.containsKey (dbrefs[i].getSource ())) {\r
-res.add (dbrefs[i]);\r
-}}\r
-if (res.size () > 0) {\r
-var reply = new Array (res.size ());\r
-return res.toArray (reply);\r
-}res = null;\r
-return null;\r
-}, "~A,~A");\r
-c$.isDasCoordinateSystem = Clazz.defineMethod (c$, "isDasCoordinateSystem", \r
-function (string, dBRefEntry) {\r
-if (string == null || dBRefEntry == null) {\r
-return false;\r
-}var coordsys = jalview.util.DBRefUtils.dasCoordinateSystemsLookup.get (string.toLowerCase ());\r
-return coordsys == null ? false : coordsys.equals (dBRefEntry.getSource ());\r
-}, "~S,jalview.datamodel.DBRefEntry");\r
-c$.getCanonicalName = Clazz.defineMethod (c$, "getCanonicalName", \r
-function (source) {\r
-if (source == null) {\r
-return null;\r
-}var canonical = jalview.util.DBRefUtils.canonicalSourceNameLookup.get (source.toLowerCase ());\r
-return canonical == null ? source : canonical;\r
-}, "~S");\r
-c$.searchRefs = Clazz.defineMethod (c$, "searchRefs", \r
-function (ref, entry) {\r
-return jalview.util.DBRefUtils.searchRefs (ref, entry, jalview.util.DBRefUtils.matchDbAndIdAndEitherMapOrEquivalentMapList);\r
-}, "~A,jalview.datamodel.DBRefEntry");\r
-c$.searchRefs = Clazz.defineMethod (c$, "searchRefs", \r
-function (refs, entry, comparator) {\r
-if (refs == null || entry == null) {\r
-return null;\r
-}var rfs = new java.util.ArrayList ();\r
-for (var i = 0; i < refs.length; i++) {\r
-if (comparator.matches (entry, refs[i])) {\r
-rfs.add (refs[i]);\r
-}}\r
-return rfs.size () == 0 ? null : rfs.toArray ( new Array (rfs.size ()));\r
-}, "~A,jalview.datamodel.DBRefEntry,jalview.util.DBRefUtils.DbRefComp");\r
-c$.parseToDbRef = Clazz.defineMethod (c$, "parseToDbRef", \r
-function (seq, dbname, version, acn) {\r
-var ref = null;\r
-if (dbname != null) {\r
-var locsrc = jalview.util.DBRefUtils.getCanonicalName (dbname);\r
-if (locsrc.equals (jalview.datamodel.DBRefSource.PDB)) {\r
-var r = jalview.jsdev.RegExp.newRegex (["([0-9][0-9A-Za-z]{3})\\s*(.?)\\s*;\\s*([0-9]+)-([0-9]+)"]);\r
-if (r.search (acn.trim ())) {\r
-var pdbid = r.stringMatchedI (1);\r
-var chaincode = r.stringMatchedI (2);\r
-if (chaincode == null) {\r
-chaincode = " ";\r
-}if (chaincode.equals (" ")) {\r
-chaincode = "_";\r
-}ref = new jalview.datamodel.DBRefEntry (locsrc, version, pdbid + chaincode);\r
-var pdbr = new jalview.datamodel.PDBEntry ();\r
-pdbr.setId (pdbid);\r
-pdbr.setType (jalview.datamodel.PDBEntry.Type.PDB);\r
-pdbr.setProperty ( new java.util.Hashtable ());\r
-pdbr.setChainCode (chaincode);\r
-seq.addPDBId (pdbr);\r
-} else {\r
-System.err.println ("Malformed PDB DR line:" + acn);\r
-}} else {\r
-ref = new jalview.datamodel.DBRefEntry (locsrc, version, acn);\r
-}}if (ref != null) {\r
-seq.addDBRef (ref);\r
-}return ref;\r
-}, "jalview.datamodel.SequenceI,~S,~S,~S");\r
-c$.$DBRefUtils$1$ = function () {\r
-Clazz.pu$h ();\r
-c$ = Clazz.declareAnonymous (jalview.util, "DBRefUtils$1", null, jalview.util.DBRefUtils.DbRefComp);\r
-Clazz.defineMethod (c$, "matches", \r
-function (refa, refb) {\r
-if (refa.getSource () == null || refb.getSource ().equals (refa.getSource ())) {\r
-if (refa.getVersion () == null || refb.getVersion ().equals (refa.getVersion ())) {\r
-if (refa.getAccessionId () == null || refb.getAccessionId ().equals (refa.getAccessionId ())) {\r
-if (refa.getMap () == null || (refb.getMap () != null && refb.getMap ().equals (refa.getMap ()))) {\r
-return true;\r
-}}}}return false;\r
-}, "jalview.datamodel.DBRefEntry,jalview.datamodel.DBRefEntry");\r
-c$ = Clazz.p0p ();\r
-};\r
-c$.$DBRefUtils$2$ = function () {\r
-Clazz.pu$h ();\r
-c$ = Clazz.declareAnonymous (jalview.util, "DBRefUtils$2", null, jalview.util.DBRefUtils.DbRefComp);\r
-Clazz.defineMethod (c$, "matches", \r
-function (refa, refb) {\r
-if ((refa.getSource () == null || refb.getSource () == null) || refb.getSource ().equals (refa.getSource ())) {\r
-if ((refa.getVersion () == null || refb.getVersion () == null) || refb.getVersion ().equals (refa.getVersion ())) {\r
-if ((refa.getAccessionId () == null || refb.getAccessionId () == null) || refb.getAccessionId ().equals (refa.getAccessionId ())) {\r
-if ((refa.getMap () == null || refb.getMap () == null) || (refb.getMap () != null && refb.getMap ().equals (refa.getMap ()))) {\r
-return true;\r
-}}}}return false;\r
-}, "jalview.datamodel.DBRefEntry,jalview.datamodel.DBRefEntry");\r
-c$ = Clazz.p0p ();\r
-};\r
-c$.$DBRefUtils$3$ = function () {\r
-Clazz.pu$h ();\r
-c$ = Clazz.declareAnonymous (jalview.util, "DBRefUtils$3", null, jalview.util.DBRefUtils.DbRefComp);\r
-Clazz.defineMethod (c$, "matches", \r
-function (refa, refb) {\r
-if (refa.getSource () != null && refb.getSource () != null && refb.getSource ().equals (refa.getSource ())) {\r
-if (refa.getAccessionId () != null && refb.getAccessionId () != null || refb.getAccessionId ().equals (refa.getAccessionId ())) {\r
-if ((refa.getMap () == null || refb.getMap () == null) || (refa.getMap () != null && refb.getMap () != null && refb.getMap ().equals (refa.getMap ()))) {\r
-return true;\r
-}}}return false;\r
-}, "jalview.datamodel.DBRefEntry,jalview.datamodel.DBRefEntry");\r
-c$ = Clazz.p0p ();\r
-};\r
-c$.$DBRefUtils$4$ = function () {\r
-Clazz.pu$h ();\r
-c$ = Clazz.declareAnonymous (jalview.util, "DBRefUtils$4", null, jalview.util.DBRefUtils.DbRefComp);\r
-Clazz.defineMethod (c$, "matches", \r
-function (refa, refb) {\r
-if (refa.getSource () != null && refb.getSource () != null && refb.getSource ().equals (refa.getSource ())) {\r
-if (refa.getAccessionId () != null && refb.getAccessionId () != null || refb.getAccessionId ().equals (refa.getAccessionId ())) {\r
-if ((refa.getMap () == null && refb.getMap () == null) || (refa.getMap () != null && refb.getMap () != null)) {\r
-if ((refb.getMap ().getMap () == null && refa.getMap ().getMap () == null) || (refb.getMap ().getMap () != null && refa.getMap ().getMap () != null && refb.getMap ().getMap ().getInverse ().equals (refa.getMap ().getMap ()))) {\r
-return true;\r
-}}}}return false;\r
-}, "jalview.datamodel.DBRefEntry,jalview.datamodel.DBRefEntry");\r
-c$ = Clazz.p0p ();\r
-};\r
-c$.$DBRefUtils$5$ = function () {\r
-Clazz.pu$h ();\r
-c$ = Clazz.declareAnonymous (jalview.util, "DBRefUtils$5", null, jalview.util.DBRefUtils.DbRefComp);\r
-Clazz.defineMethod (c$, "matches", \r
-function (refa, refb) {\r
-if (refa.getSource () != null && refb.getSource () != null && refb.getSource ().equals (refa.getSource ())) {\r
-if (refa.getAccessionId () != null && refb.getAccessionId () != null || refb.getAccessionId ().equals (refa.getAccessionId ())) {\r
-if (refa.getMap () == null && refb.getMap () == null) {\r
-return true;\r
-}if (refa.getMap () != null && refb.getMap () != null && ((refb.getMap ().getMap () == null && refa.getMap ().getMap () == null) || (refb.getMap ().getMap () != null && refa.getMap ().getMap () != null && refb.getMap ().getMap ().equals (refa.getMap ().getMap ())))) {\r
-return true;\r
-}}}return false;\r
-}, "jalview.datamodel.DBRefEntry,jalview.datamodel.DBRefEntry");\r
-c$ = Clazz.p0p ();\r
-};\r
-c$.$DBRefUtils$6$ = function () {\r
-Clazz.pu$h ();\r
-c$ = Clazz.declareAnonymous (jalview.util, "DBRefUtils$6", null, jalview.util.DBRefUtils.DbRefComp);\r
-Clazz.defineMethod (c$, "matches", \r
-function (refa, refb) {\r
-if (refa.getSource () != null && refb.getSource () != null && refb.getSource ().equals (refa.getSource ())) {\r
-if (refa.getAccessionId () != null && refb.getAccessionId () != null && refb.getAccessionId ().equals (refa.getAccessionId ())) {\r
-if (refa.getMap () == null || refb.getMap () == null) {\r
-return true;\r
-}if ((refa.getMap () != null && refb.getMap () != null) && (refb.getMap ().getMap () == null && refa.getMap ().getMap () == null) || (refb.getMap ().getMap () != null && refa.getMap ().getMap () != null && (refb.getMap ().getMap ().equals (refa.getMap ().getMap ())))) {\r
-return true;\r
-}}}return false;\r
-}, "jalview.datamodel.DBRefEntry,jalview.datamodel.DBRefEntry");\r
-c$ = Clazz.p0p ();\r
-};\r
-Clazz.declareInterface (jalview.util.DBRefUtils, "DbRefComp");\r
-c$.canonicalSourceNameLookup = c$.prototype.canonicalSourceNameLookup = new java.util.HashMap ();\r
-c$.dasCoordinateSystemsLookup = c$.prototype.dasCoordinateSystemsLookup = new java.util.HashMap ();\r
-{\r
-jalview.util.DBRefUtils.canonicalSourceNameLookup.put ("uniprotkb/swiss-prot", jalview.datamodel.DBRefSource.UNIPROT);\r
-jalview.util.DBRefUtils.canonicalSourceNameLookup.put ("uniprotkb/trembl", jalview.datamodel.DBRefSource.UNIPROT);\r
-jalview.util.DBRefUtils.canonicalSourceNameLookup.put ("pdb", jalview.datamodel.DBRefSource.PDB);\r
-jalview.util.DBRefUtils.dasCoordinateSystemsLookup.put ("pdbresnum", jalview.datamodel.DBRefSource.PDB);\r
-jalview.util.DBRefUtils.dasCoordinateSystemsLookup.put ("uniprot", jalview.datamodel.DBRefSource.UNIPROT);\r
-jalview.util.DBRefUtils.dasCoordinateSystemsLookup.put ("embl", jalview.datamodel.DBRefSource.EMBL);\r
-}c$.matchNonNullonA = c$.prototype.matchNonNullonA = ((Clazz.isClassDefined ("jalview.util.DBRefUtils$1") ? 0 : jalview.util.DBRefUtils.$DBRefUtils$1$ ()), Clazz.innerTypeInstance (jalview.util.DBRefUtils$1, this, null));\r
-c$.matchEitherNonNull = c$.prototype.matchEitherNonNull = ((Clazz.isClassDefined ("jalview.util.DBRefUtils$2") ? 0 : jalview.util.DBRefUtils.$DBRefUtils$2$ ()), Clazz.innerTypeInstance (jalview.util.DBRefUtils$2, this, null));\r
-c$.matchDbAndIdAndEitherMap = c$.prototype.matchDbAndIdAndEitherMap = ((Clazz.isClassDefined ("jalview.util.DBRefUtils$3") ? 0 : jalview.util.DBRefUtils.$DBRefUtils$3$ ()), Clazz.innerTypeInstance (jalview.util.DBRefUtils$3, this, null));\r
-c$.matchDbAndIdAndComplementaryMapList = c$.prototype.matchDbAndIdAndComplementaryMapList = ((Clazz.isClassDefined ("jalview.util.DBRefUtils$4") ? 0 : jalview.util.DBRefUtils.$DBRefUtils$4$ ()), Clazz.innerTypeInstance (jalview.util.DBRefUtils$4, this, null));\r
-c$.matchDbAndIdAndEquivalentMapList = c$.prototype.matchDbAndIdAndEquivalentMapList = ((Clazz.isClassDefined ("jalview.util.DBRefUtils$5") ? 0 : jalview.util.DBRefUtils.$DBRefUtils$5$ ()), Clazz.innerTypeInstance (jalview.util.DBRefUtils$5, this, null));\r
-c$.matchDbAndIdAndEitherMapOrEquivalentMapList = c$.prototype.matchDbAndIdAndEitherMapOrEquivalentMapList = ((Clazz.isClassDefined ("jalview.util.DBRefUtils$6") ? 0 : jalview.util.DBRefUtils.$DBRefUtils$6$ ()), Clazz.innerTypeInstance (jalview.util.DBRefUtils$6, this, null));\r
-});\r
+Clazz.declarePackage ("jalview.util");
+Clazz.load (["java.util.HashMap"], "jalview.util.DBRefUtils", ["jalview.datamodel.DBRefEntry", "$.DBRefSource", "$.PDBEntry", "jalview.jsdev.RegExp", "java.util.ArrayList", "$.Hashtable"], function () {
+c$ = Clazz.declareType (jalview.util, "DBRefUtils");
+c$.selectRefs = Clazz.defineMethod (c$, "selectRefs",
+function (dbrefs, sources) {
+if (dbrefs == null) {
+return null;
+}if (sources == null) {
+return dbrefs;
+}var srcs = new java.util.HashMap ();
+var res = new java.util.ArrayList ();
+for (var i = 0; i < sources.length; i++) {
+srcs.put ( String.instantialize (sources[i]), new Integer (i));
+}
+for (var i = 0, j = dbrefs.length; i < j; i++) {
+if (srcs.containsKey (dbrefs[i].getSource ())) {
+res.add (dbrefs[i]);
+}}
+if (res.size () > 0) {
+var reply = new Array (res.size ());
+return res.toArray (reply);
+}res = null;
+return null;
+}, "~A,~A");
+c$.isDasCoordinateSystem = Clazz.defineMethod (c$, "isDasCoordinateSystem",
+function (string, dBRefEntry) {
+if (string == null || dBRefEntry == null) {
+return false;
+}var coordsys = jalview.util.DBRefUtils.dasCoordinateSystemsLookup.get (string.toLowerCase ());
+return coordsys == null ? false : coordsys.equals (dBRefEntry.getSource ());
+}, "~S,jalview.datamodel.DBRefEntry");
+c$.getCanonicalName = Clazz.defineMethod (c$, "getCanonicalName",
+function (source) {
+if (source == null) {
+return null;
+}var canonical = jalview.util.DBRefUtils.canonicalSourceNameLookup.get (source.toLowerCase ());
+return canonical == null ? source : canonical;
+}, "~S");
+c$.searchRefs = Clazz.defineMethod (c$, "searchRefs",
+function (ref, entry) {
+return jalview.util.DBRefUtils.searchRefs (ref, entry, jalview.util.DBRefUtils.matchDbAndIdAndEitherMapOrEquivalentMapList);
+}, "~A,jalview.datamodel.DBRefEntry");
+c$.searchRefs = Clazz.defineMethod (c$, "searchRefs",
+function (refs, entry, comparator) {
+if (refs == null || entry == null) {
+return null;
+}var rfs = new java.util.ArrayList ();
+for (var i = 0; i < refs.length; i++) {
+if (comparator.matches (entry, refs[i])) {
+rfs.add (refs[i]);
+}}
+return rfs.size () == 0 ? null : rfs.toArray ( new Array (rfs.size ()));
+}, "~A,jalview.datamodel.DBRefEntry,jalview.util.DBRefUtils.DbRefComp");
+c$.parseToDbRef = Clazz.defineMethod (c$, "parseToDbRef",
+function (seq, dbname, version, acn) {
+var ref = null;
+if (dbname != null) {
+var locsrc = jalview.util.DBRefUtils.getCanonicalName (dbname);
+if (locsrc.equals (jalview.datamodel.DBRefSource.PDB)) {
+var r = jalview.jsdev.RegExp.newRegex (["([0-9][0-9A-Za-z]{3})\\s*(.?)\\s*;\\s*([0-9]+)-([0-9]+)"]);
+if (r.search (acn.trim ())) {
+var pdbid = r.stringMatchedI (1);
+var chaincode = r.stringMatchedI (2);
+if (chaincode == null) {
+chaincode = " ";
+}if (chaincode.equals (" ")) {
+chaincode = "_";
+}ref = new jalview.datamodel.DBRefEntry (locsrc, version, pdbid + chaincode);
+var pdbr = new jalview.datamodel.PDBEntry ();
+pdbr.setId (pdbid);
+pdbr.setType (jalview.datamodel.PDBEntry.Type.PDB);
+pdbr.setProperty ( new java.util.Hashtable ());
+pdbr.setChainCode (chaincode);
+seq.addPDBId (pdbr);
+} else {
+System.err.println ("Malformed PDB DR line:" + acn);
+}} else {
+ref = new jalview.datamodel.DBRefEntry (locsrc, version, acn);
+}}if (ref != null) {
+seq.addDBRef (ref);
+}return ref;
+}, "jalview.datamodel.SequenceI,~S,~S,~S");
+c$.$DBRefUtils$1$ = function () {
+Clazz.pu$h ();
+c$ = Clazz.declareAnonymous (jalview.util, "DBRefUtils$1", null, jalview.util.DBRefUtils.DbRefComp);
+Clazz.defineMethod (c$, "matches",
+function (refa, refb) {
+if (refa.getSource () == null || refb.getSource ().equals (refa.getSource ())) {
+if (refa.getVersion () == null || refb.getVersion ().equals (refa.getVersion ())) {
+if (refa.getAccessionId () == null || refb.getAccessionId ().equals (refa.getAccessionId ())) {
+if (refa.getMap () == null || (refb.getMap () != null && refb.getMap ().equals (refa.getMap ()))) {
+return true;
+}}}}return false;
+}, "jalview.datamodel.DBRefEntry,jalview.datamodel.DBRefEntry");
+c$ = Clazz.p0p ();
+};
+c$.$DBRefUtils$2$ = function () {
+Clazz.pu$h ();
+c$ = Clazz.declareAnonymous (jalview.util, "DBRefUtils$2", null, jalview.util.DBRefUtils.DbRefComp);
+Clazz.defineMethod (c$, "matches",
+function (refa, refb) {
+if ((refa.getSource () == null || refb.getSource () == null) || refb.getSource ().equals (refa.getSource ())) {
+if ((refa.getVersion () == null || refb.getVersion () == null) || refb.getVersion ().equals (refa.getVersion ())) {
+if ((refa.getAccessionId () == null || refb.getAccessionId () == null) || refb.getAccessionId ().equals (refa.getAccessionId ())) {
+if ((refa.getMap () == null || refb.getMap () == null) || (refb.getMap () != null && refb.getMap ().equals (refa.getMap ()))) {
+return true;
+}}}}return false;
+}, "jalview.datamodel.DBRefEntry,jalview.datamodel.DBRefEntry");
+c$ = Clazz.p0p ();
+};
+c$.$DBRefUtils$3$ = function () {
+Clazz.pu$h ();
+c$ = Clazz.declareAnonymous (jalview.util, "DBRefUtils$3", null, jalview.util.DBRefUtils.DbRefComp);
+Clazz.defineMethod (c$, "matches",
+function (refa, refb) {
+if (refa.getSource () != null && refb.getSource () != null && refb.getSource ().equals (refa.getSource ())) {
+if (refa.getAccessionId () != null && refb.getAccessionId () != null || refb.getAccessionId ().equals (refa.getAccessionId ())) {
+if ((refa.getMap () == null || refb.getMap () == null) || (refa.getMap () != null && refb.getMap () != null && refb.getMap ().equals (refa.getMap ()))) {
+return true;
+}}}return false;
+}, "jalview.datamodel.DBRefEntry,jalview.datamodel.DBRefEntry");
+c$ = Clazz.p0p ();
+};
+c$.$DBRefUtils$4$ = function () {
+Clazz.pu$h ();
+c$ = Clazz.declareAnonymous (jalview.util, "DBRefUtils$4", null, jalview.util.DBRefUtils.DbRefComp);
+Clazz.defineMethod (c$, "matches",
+function (refa, refb) {
+if (refa.getSource () != null && refb.getSource () != null && refb.getSource ().equals (refa.getSource ())) {
+if (refa.getAccessionId () != null && refb.getAccessionId () != null || refb.getAccessionId ().equals (refa.getAccessionId ())) {
+if ((refa.getMap () == null && refb.getMap () == null) || (refa.getMap () != null && refb.getMap () != null)) {
+if ((refb.getMap ().getMap () == null && refa.getMap ().getMap () == null) || (refb.getMap ().getMap () != null && refa.getMap ().getMap () != null && refb.getMap ().getMap ().getInverse ().equals (refa.getMap ().getMap ()))) {
+return true;
+}}}}return false;
+}, "jalview.datamodel.DBRefEntry,jalview.datamodel.DBRefEntry");
+c$ = Clazz.p0p ();
+};
+c$.$DBRefUtils$5$ = function () {
+Clazz.pu$h ();
+c$ = Clazz.declareAnonymous (jalview.util, "DBRefUtils$5", null, jalview.util.DBRefUtils.DbRefComp);
+Clazz.defineMethod (c$, "matches",
+function (refa, refb) {
+if (refa.getSource () != null && refb.getSource () != null && refb.getSource ().equals (refa.getSource ())) {
+if (refa.getAccessionId () != null && refb.getAccessionId () != null || refb.getAccessionId ().equals (refa.getAccessionId ())) {
+if (refa.getMap () == null && refb.getMap () == null) {
+return true;
+}if (refa.getMap () != null && refb.getMap () != null && ((refb.getMap ().getMap () == null && refa.getMap ().getMap () == null) || (refb.getMap ().getMap () != null && refa.getMap ().getMap () != null && refb.getMap ().getMap ().equals (refa.getMap ().getMap ())))) {
+return true;
+}}}return false;
+}, "jalview.datamodel.DBRefEntry,jalview.datamodel.DBRefEntry");
+c$ = Clazz.p0p ();
+};
+c$.$DBRefUtils$6$ = function () {
+Clazz.pu$h ();
+c$ = Clazz.declareAnonymous (jalview.util, "DBRefUtils$6", null, jalview.util.DBRefUtils.DbRefComp);
+Clazz.defineMethod (c$, "matches",
+function (refa, refb) {
+if (refa.getSource () != null && refb.getSource () != null && refb.getSource ().equals (refa.getSource ())) {
+if (refa.getAccessionId () != null && refb.getAccessionId () != null && refb.getAccessionId ().equals (refa.getAccessionId ())) {
+if (refa.getMap () == null || refb.getMap () == null) {
+return true;
+}if ((refa.getMap () != null && refb.getMap () != null) && (refb.getMap ().getMap () == null && refa.getMap ().getMap () == null) || (refb.getMap ().getMap () != null && refa.getMap ().getMap () != null && (refb.getMap ().getMap ().equals (refa.getMap ().getMap ())))) {
+return true;
+}}}return false;
+}, "jalview.datamodel.DBRefEntry,jalview.datamodel.DBRefEntry");
+c$ = Clazz.p0p ();
+};
+Clazz.declareInterface (jalview.util.DBRefUtils, "DbRefComp");
+c$.canonicalSourceNameLookup = c$.prototype.canonicalSourceNameLookup = new java.util.HashMap ();
+c$.dasCoordinateSystemsLookup = c$.prototype.dasCoordinateSystemsLookup = new java.util.HashMap ();
+{
+jalview.util.DBRefUtils.canonicalSourceNameLookup.put ("uniprotkb/swiss-prot", jalview.datamodel.DBRefSource.UNIPROT);
+jalview.util.DBRefUtils.canonicalSourceNameLookup.put ("uniprotkb/trembl", jalview.datamodel.DBRefSource.UNIPROT);
+jalview.util.DBRefUtils.canonicalSourceNameLookup.put ("pdb", jalview.datamodel.DBRefSource.PDB);
+jalview.util.DBRefUtils.dasCoordinateSystemsLookup.put ("pdbresnum", jalview.datamodel.DBRefSource.PDB);
+jalview.util.DBRefUtils.dasCoordinateSystemsLookup.put ("uniprot", jalview.datamodel.DBRefSource.UNIPROT);
+jalview.util.DBRefUtils.dasCoordinateSystemsLookup.put ("embl", jalview.datamodel.DBRefSource.EMBL);
+}c$.matchNonNullonA = c$.prototype.matchNonNullonA = ((Clazz.isClassDefined ("jalview.util.DBRefUtils$1") ? 0 : jalview.util.DBRefUtils.$DBRefUtils$1$ ()), Clazz.innerTypeInstance (jalview.util.DBRefUtils$1, this, null));
+c$.matchEitherNonNull = c$.prototype.matchEitherNonNull = ((Clazz.isClassDefined ("jalview.util.DBRefUtils$2") ? 0 : jalview.util.DBRefUtils.$DBRefUtils$2$ ()), Clazz.innerTypeInstance (jalview.util.DBRefUtils$2, this, null));
+c$.matchDbAndIdAndEitherMap = c$.prototype.matchDbAndIdAndEitherMap = ((Clazz.isClassDefined ("jalview.util.DBRefUtils$3") ? 0 : jalview.util.DBRefUtils.$DBRefUtils$3$ ()), Clazz.innerTypeInstance (jalview.util.DBRefUtils$3, this, null));
+c$.matchDbAndIdAndComplementaryMapList = c$.prototype.matchDbAndIdAndComplementaryMapList = ((Clazz.isClassDefined ("jalview.util.DBRefUtils$4") ? 0 : jalview.util.DBRefUtils.$DBRefUtils$4$ ()), Clazz.innerTypeInstance (jalview.util.DBRefUtils$4, this, null));
+c$.matchDbAndIdAndEquivalentMapList = c$.prototype.matchDbAndIdAndEquivalentMapList = ((Clazz.isClassDefined ("jalview.util.DBRefUtils$5") ? 0 : jalview.util.DBRefUtils.$DBRefUtils$5$ ()), Clazz.innerTypeInstance (jalview.util.DBRefUtils$5, this, null));
+c$.matchDbAndIdAndEitherMapOrEquivalentMapList = c$.prototype.matchDbAndIdAndEitherMapOrEquivalentMapList = ((Clazz.isClassDefined ("jalview.util.DBRefUtils$6") ? 0 : jalview.util.DBRefUtils.$DBRefUtils$6$ ()), Clazz.innerTypeInstance (jalview.util.DBRefUtils$6, this, null));
+});
git://source.jalview.org / jalviewjs.git / blobdiff