Merge branch 'master' of https://source.jalview.org/git/jalviewjs.git

[jalviewjs.git] / site / j2s / jalview / commands / RemoveGapColCommand.js

diff --git a/site/j2s/jalview/commands/RemoveGapColCommand.js b/site/j2s/jalview/commands/RemoveGapColCommand.js
index a41e76e..511279b 100644 (file)
--- a/site/j2s/jalview/commands/RemoveGapColCommand.js
+++ b/site/j2s/jalview/commands/RemoveGapColCommand.js
@@ -1,45 +1,45 @@
-Clazz.declarePackage ("jalview.commands");\r
-Clazz.load (["jalview.commands.EditCommand"], "jalview.commands.RemoveGapColCommand", ["jalview.util.Comparison"], function () {\r
-c$ = Clazz.decorateAsClass (function () {\r
-this.columnsDeleted = 0;\r
-Clazz.instantialize (this, arguments);\r
-}, jalview.commands, "RemoveGapColCommand", jalview.commands.EditCommand);\r
-Clazz.makeConstructor (c$, \r
-function (description, seqs, start, end, al) {\r
-Clazz.superConstructor (this, jalview.commands.RemoveGapColCommand, []);\r
-this.description = description;\r
-var j;\r
-var jSize = seqs.length;\r
-var startCol = -1;\r
-var endCol = -1;\r
-this.columnsDeleted = 0;\r
-this.clearEdits ();\r
-var $delete = true;\r
-for (var i = start; i <= end; i++) {\r
-$delete = true;\r
-for (j = 0; j < jSize; j++) {\r
-if (seqs[j].getLength () > i) {\r
-if (!jalview.util.Comparison.isGap (seqs[j].getCharAt (i))) {\r
-if ($delete) {\r
-endCol = i;\r
-}$delete = false;\r
-break;\r
-}}}\r
-if ($delete && startCol == -1) {\r
-startCol = i;\r
-}if (!$delete && startCol > -1) {\r
-this.appendEdit (jalview.commands.EditCommand.Action.DELETE_GAP, seqs, startCol - this.columnsDeleted, endCol - startCol, al, false, null);\r
-this.columnsDeleted += (endCol - startCol);\r
-startCol = -1;\r
-endCol = -1;\r
-}}\r
-if ($delete && startCol > -1) {\r
-this.appendEdit (jalview.commands.EditCommand.Action.DELETE_GAP, seqs, startCol - this.columnsDeleted, end - startCol + 1, al, false, null);\r
-this.columnsDeleted += (end - startCol + 1);\r
-}this.performEdit (0, null);\r
-}, "~S,~A,~N,~N,jalview.datamodel.AlignmentI");\r
-Clazz.overrideMethod (c$, "getSize", \r
-function () {\r
-return this.columnsDeleted;\r
-});\r
-});\r
+Clazz.declarePackage ("jalview.commands");
+Clazz.load (["jalview.commands.EditCommand"], "jalview.commands.RemoveGapColCommand", ["jalview.util.Comparison"], function () {
+c$ = Clazz.decorateAsClass (function () {
+this.columnsDeleted = 0;
+Clazz.instantialize (this, arguments);
+}, jalview.commands, "RemoveGapColCommand", jalview.commands.EditCommand);
+Clazz.makeConstructor (c$, 
+function (description, seqs, start, end, al) {
+Clazz.superConstructor (this, jalview.commands.RemoveGapColCommand, []);
+this.description = description;
+var j;
+var jSize = seqs.length;
+var startCol = -1;
+var endCol = -1;
+this.columnsDeleted = 0;
+this.clearEdits ();
+var $delete = true;
+for (var i = start; i <= end; i++) {
+$delete = true;
+for (j = 0; j < jSize; j++) {
+if (seqs[j].getLength () > i) {
+if (!jalview.util.Comparison.isGap (seqs[j].getCharAt (i))) {
+if ($delete) {
+endCol = i;
+}$delete = false;
+break;
+}}}
+if ($delete && startCol == -1) {
+startCol = i;
+}if (!$delete && startCol > -1) {
+this.appendEdit (jalview.commands.EditCommand.Action.DELETE_GAP, seqs, startCol - this.columnsDeleted, endCol - startCol, al, false, null);
+this.columnsDeleted += (endCol - startCol);
+startCol = -1;
+endCol = -1;
+}}
+if ($delete && startCol > -1) {
+this.appendEdit (jalview.commands.EditCommand.Action.DELETE_GAP, seqs, startCol - this.columnsDeleted, end - startCol + 1, al, false, null);
+this.columnsDeleted += (end - startCol + 1);
+}this.performEdit (0, null);
+}, "~S,~A,~N,~N,jalview.datamodel.AlignmentI");
+Clazz.overrideMethod (c$, "getSize", 
+function () {
+return this.columnsDeleted;
+});
+});