Merge branch 'master' of https://source.jalview.org/git/jalviewjs.git

[jalviewjs.git] / site / j2s / jalview / workers / AlignCalcWorker.js

diff --git a/site/j2s/jalview/workers/AlignCalcWorker.js b/site/j2s/jalview/workers/AlignCalcWorker.js
index 43b690b..6636e6d 100644 (file)
--- a/site/j2s/jalview/workers/AlignCalcWorker.js
+++ b/site/j2s/jalview/workers/AlignCalcWorker.js
@@ -1,54 +1,54 @@
-Clazz.declarePackage ("jalview.workers");\r
-Clazz.load (["jalview.api.AlignCalcWorkerI", "swingjs.JSThread"], "jalview.workers.AlignCalcWorker", null, function () {\r
-c$ = Clazz.decorateAsClass (function () {\r
-this.iFirst = 0;\r
-this.iLast = 0;\r
-this.nPer = 2;\r
-this.started = 0;\r
-this.alignment = null;\r
-this.aWidth = 0;\r
-this.alignViewport = null;\r
-this.calcMan = null;\r
-this.ap = null;\r
-this.ourAnnots = null;\r
-Clazz.instantialize (this, arguments);\r
-}, jalview.workers, "AlignCalcWorker", swingjs.JSThread, jalview.api.AlignCalcWorkerI);\r
-Clazz.makeConstructor (c$, \r
-function (alignViewport, alignPanel) {\r
-Clazz.superConstructor (this, jalview.workers.AlignCalcWorker, [null, "AlignCalcWorker"]);\r
-this.alignViewport = alignViewport;\r
-this.calcMan = alignViewport.getCalcManager ();\r
-this.ap = alignPanel;\r
-}, "jalview.api.AlignViewportI,jalview.api.AlignmentViewPanel");\r
-Clazz.defineMethod (c$, "abortAndDestroy", \r
-function () {\r
-if (this.calcMan != null) {\r
-this.calcMan.workerComplete (this);\r
-}this.alignViewport = null;\r
-this.calcMan = null;\r
-this.ap = null;\r
-});\r
-Clazz.overrideMethod (c$, "involves", \r
-function (i) {\r
-return this.ourAnnots != null && this.ourAnnots.contains (i);\r
-}, "jalview.datamodel.AlignmentAnnotation");\r
-Clazz.overrideMethod (c$, "removeOurAnnotation", \r
-function () {\r
-if (this.ourAnnots != null && this.alignViewport != null) {\r
-var alignment = this.alignViewport.getAlignment ();\r
-{\r
-for (var aa, $aa = this.ourAnnots.iterator (); $aa.hasNext () && ((aa = $aa.next ()) || true);) {\r
-alignment.deleteAnnotation (aa, true);\r
-}\r
-}}});\r
-Clazz.defineMethod (c$, "notifyDone", \r
-function () {\r
-if (this.ap != null) {\r
-this.ap.paintAlignment (true);\r
-}this.calcMan.workerComplete (this);\r
-});\r
-Clazz.defineStatics (c$,\r
-"LOOP_STANDBY", 3,\r
-"LOOP_CALCULATE", 4,\r
-"MS_MAX", 500);\r
-});\r
+Clazz.declarePackage ("jalview.workers");
+Clazz.load (["jalview.api.AlignCalcWorkerI", "swingjs.JSThread"], "jalview.workers.AlignCalcWorker", null, function () {
+c$ = Clazz.decorateAsClass (function () {
+this.iFirst = 0;
+this.iLast = 0;
+this.nPer = 2;
+this.started = 0;
+this.alignment = null;
+this.aWidth = 0;
+this.alignViewport = null;
+this.calcMan = null;
+this.ap = null;
+this.ourAnnots = null;
+Clazz.instantialize (this, arguments);
+}, jalview.workers, "AlignCalcWorker", swingjs.JSThread, jalview.api.AlignCalcWorkerI);
+Clazz.makeConstructor (c$, 
+function (alignViewport, alignPanel) {
+Clazz.superConstructor (this, jalview.workers.AlignCalcWorker, [null, "AlignCalcWorker"]);
+this.alignViewport = alignViewport;
+this.calcMan = alignViewport.getCalcManager ();
+this.ap = alignPanel;
+}, "jalview.api.AlignViewportI,jalview.api.AlignmentViewPanel");
+Clazz.defineMethod (c$, "abortAndDestroy", 
+function () {
+if (this.calcMan != null) {
+this.calcMan.workerComplete (this);
+}this.alignViewport = null;
+this.calcMan = null;
+this.ap = null;
+});
+Clazz.overrideMethod (c$, "involves", 
+function (i) {
+return this.ourAnnots != null && this.ourAnnots.contains (i);
+}, "jalview.datamodel.AlignmentAnnotation");
+Clazz.overrideMethod (c$, "removeOurAnnotation", 
+function () {
+if (this.ourAnnots != null && this.alignViewport != null) {
+var alignment = this.alignViewport.getAlignment ();
+{
+for (var aa, $aa = this.ourAnnots.iterator (); $aa.hasNext () && ((aa = $aa.next ()) || true);) {
+alignment.deleteAnnotation (aa, true);
+}
+}}});
+Clazz.defineMethod (c$, "notifyDone", 
+function () {
+if (this.ap != null) {
+this.ap.paintAlignment (true);
+}this.calcMan.workerComplete (this);
+});
+Clazz.defineStatics (c$,
+"LOOP_STANDBY", 3,
+"LOOP_CALCULATE", 4,
+"MS_MAX", 500);
+});