X-Git-Url: http://source.jalview.org/gitweb/?p=jalviewjs.git;a=blobdiff_plain;f=site%2Fj2s%2FMCview%2FAtom.js;h=ff57b47f72914b226cc3b84781e701a7761cbd4a;hp=1f4c66fe523bc02f3616dcb0db4fdca5d500a97e;hb=b9b7a352eee79b7764c3b09c9d19663075061d8c;hpb=7301a2415adab88038b291fc54caeeb3a5a47a44

diff --git a/site/j2s/MCview/Atom.js b/site/j2s/MCview/Atom.js
index 1f4c66f..ff57b47 100644
--- a/site/j2s/MCview/Atom.js
+++ b/site/j2s/MCview/Atom.js
@@ -1,55 +1,55 @@
-Clazz.declarePackage ("MCview");
-Clazz.load (["java.awt.Color"], "MCview.Atom", ["java.lang.Float"], function () {
-c$ = Clazz.decorateAsClass (function () {
-this.x = 0;
-this.y = 0;
-this.z = 0;
-this.number = 0;
-this.name = null;
-this.resName = null;
-this.resNumber = 0;
-this.insCode = ' ';
-this.resNumIns = null;
-this.type = 0;
-this.color = null;
-this.chain = null;
-this.alignmentMapping = -1;
-this.atomIndex = 0;
-this.occupancy = 0;
-this.tfactor = 0;
-this.isSelected = false;
-Clazz.instantialize (this, arguments);
-}, MCview, "Atom");
-Clazz.prepareFields (c$, function () {
-this.color = java.awt.Color.lightGray;
-});
-Clazz.makeConstructor (c$, 
-function (str) {
-this.atomIndex = Integer.parseInt (str.substring (6, 11).trim ());
-this.name = str.substring (12, 15).trim ();
-this.resName = str.substring (17, 20);
-this.chain = str.substring (21, 22);
-this.resNumber = Integer.parseInt (str.substring (22, 26).trim ());
-this.resNumIns = str.substring (22, 27).trim ();
-this.insCode = str.substring (26, 27).charAt (0);
-this.x = ( new Float (str.substring (30, 38).trim ()).floatValue ());
-this.y = ( new Float (str.substring (38, 46).trim ()).floatValue ());
-this.z = ( new Float (str.substring (47, 55).trim ()).floatValue ());
-var tm = str.substring (54, 60).trim ();
-if (tm.length > 0) {
-this.occupancy = ( new Float (tm)).floatValue ();
-} else {
-this.occupancy = 1;
-}tm = str.substring (60, 66).trim ();
-if (tm.length > 0) {
-this.tfactor = ( new Float (tm).floatValue ());
-} else {
-this.tfactor = 1;
-}}, "~S");
-Clazz.makeConstructor (c$, 
-function (x, y, z) {
-this.x = x;
-this.y = y;
-this.z = z;
-}, "~N,~N,~N");
-});
+Clazz.declarePackage ("MCview");
+Clazz.load (["java.awt.Color"], "MCview.Atom", ["java.lang.Float"], function () {
+c$ = Clazz.decorateAsClass (function () {
+this.x = 0;
+this.y = 0;
+this.z = 0;
+this.number = 0;
+this.name = null;
+this.resName = null;
+this.resNumber = 0;
+this.insCode = ' ';
+this.resNumIns = null;
+this.type = 0;
+this.color = null;
+this.chain = null;
+this.alignmentMapping = -1;
+this.atomIndex = 0;
+this.occupancy = 0;
+this.tfactor = 0;
+this.isSelected = false;
+Clazz.instantialize (this, arguments);
+}, MCview, "Atom");
+Clazz.prepareFields (c$, function () {
+this.color = java.awt.Color.lightGray;
+});
+Clazz.makeConstructor (c$, 
+function (str) {
+this.atomIndex = Integer.parseInt (str.substring (6, 11).trim ());
+this.name = str.substring (12, 15).trim ();
+this.resName = str.substring (17, 20);
+this.chain = str.substring (21, 22);
+this.resNumber = Integer.parseInt (str.substring (22, 26).trim ());
+this.resNumIns = str.substring (22, 27).trim ();
+this.insCode = str.substring (26, 27).charAt (0);
+this.x = ( new Float (str.substring (30, 38).trim ()).floatValue ());
+this.y = ( new Float (str.substring (38, 46).trim ()).floatValue ());
+this.z = ( new Float (str.substring (47, 55).trim ()).floatValue ());
+var tm = str.substring (54, 60).trim ();
+if (tm.length > 0) {
+this.occupancy = ( new Float (tm)).floatValue ();
+} else {
+this.occupancy = 1;
+}tm = str.substring (60, 66).trim ();
+if (tm.length > 0) {
+this.tfactor = ( new Float (tm).floatValue ());
+} else {
+this.tfactor = 1;
+}}, "~S");
+Clazz.makeConstructor (c$, 
+function (x, y, z) {
+this.x = x;
+this.y = y;
+this.z = z;
+}, "~N,~N,~N");
+});