X-Git-Url: http://source.jalview.org/gitweb/?p=jalviewjs.git;a=blobdiff_plain;f=site%2Fj2s%2Fjalview%2Fanalysis%2FConservation.js;h=809884cd4b05b53d5c00026e32f6c0769860fc4b;hp=328032afff047fe69cbcba9ebc6a27621f286efa;hb=36d803e4a1f98728e91e80de5fa0b95e0cadb0d4;hpb=5b669b6c1a4f1f29b178283a46bc22fcd66aabad diff --git a/site/j2s/jalview/analysis/Conservation.js b/site/j2s/jalview/analysis/Conservation.js index 328032a..809884c 100644 --- a/site/j2s/jalview/analysis/Conservation.js +++ b/site/j2s/jalview/analysis/Conservation.js @@ -1,5 +1,5 @@ Clazz.declarePackage ("jalview.analysis"); -Clazz.load (null, "jalview.analysis.Conservation", ["jalview.datamodel.Annotation", "$.Sequence", "jalview.schemes.ResidueProperties", "jalview.util.Comparison", "java.awt.Color", "java.lang.Character", "$.Double", "$.StringBuffer", "java.util.Hashtable", "$.Vector", "JU.DebugJS"], function () { +Clazz.load (null, "jalview.analysis.Conservation", ["jalview.datamodel.Annotation", "$.Sequence", "jalview.schemes.ResidueProperties", "jalview.util.Comparison", "java.awt.Color", "java.lang.Character", "$.Double", "$.StringBuffer", "java.util.Hashtable", "$.Vector"], function () { c$ = Clazz.decorateAsClass (function () { this.sequences = null; this.start = 0; @@ -353,7 +353,6 @@ vprop = value - qmin; vprop /= qmax; quality2.annotations[i] = new jalview.datamodel.Annotation (" ", String.valueOf (value), ' ', value, new java.awt.Color (minR + (maxR * vprop), minG + (maxG * vprop), minB + (maxB * vprop))); }} -JU.DebugJS._ ("Conservation"); }, "jalview.datamodel.AlignmentAnnotation,jalview.datamodel.AlignmentAnnotation,~N,~N"); c$.calculateConservation = Clazz.defineMethod (c$, "calculateConservation", function (name, consHash, threshold, seqs, start, end, posOrNeg, consPercGaps, calcQuality) {