X-Git-Url: http://source.jalview.org/gitweb/?p=jalviewjs.git;a=blobdiff_plain;f=site%2Fj2s%2Fjalview%2Fappletgui%2FFeatureColourChooser.js;h=b98505480e0428bdf2f523b51b0727d2c97436f8;hp=1720be66885cd56a600cee1ad152781dce3398c7;hb=b9b7a352eee79b7764c3b09c9d19663075061d8c;hpb=7301a2415adab88038b291fc54caeeb3a5a47a44

diff --git a/site/j2s/jalview/appletgui/FeatureColourChooser.js b/site/j2s/jalview/appletgui/FeatureColourChooser.js
index 1720be6..b985054 100644
--- a/site/j2s/jalview/appletgui/FeatureColourChooser.js
+++ b/site/j2s/jalview/appletgui/FeatureColourChooser.js
@@ -1,292 +1,292 @@
-Clazz.declarePackage ("jalview.appletgui");
-Clazz.load (["awt2swing.Panel", "java.awt.event.ActionListener", "$.AdjustmentListener", "$.ItemListener", "$.MouseListener", "awt2swing.Checkbox", "$.Choice", "$.Scrollbar", "$.TextField"], "jalview.appletgui.FeatureColourChooser", ["awt2swing.Label", "jalview.appletgui.JVDialog", "$.PaintRefresher", "$.UserDefinedColours", "jalview.datamodel.GraphLine", "jalview.schemes.GraduatedColor", "jalview.util.MessageManager", "java.awt.Color", "$.Dimension", "$.FlowLayout", "$.Font", "$.GridLayout", "java.awt.event.ActionEvent", "java.lang.Float"], function () {
-c$ = Clazz.decorateAsClass (function () {
-this.frame = null;
-this.owner = null;
-this.fr = null;
-this.fs = null;
-this.cs = null;
-this.oldcs = null;
-this.oldgroupColours = null;
-this.adjusting = false;
-this.min = 0;
-this.max = 0;
-this.type = null;
-this.af = null;
-this.minColour = null;
-this.maxColour = null;
-this.jPanel1 = null;
-this.jPanel2 = null;
-this.threshold = null;
-this.jPanel3 = null;
-this.jPanel4 = null;
-this.slider = null;
-this.thresholdValue = null;
-this.thresholdIsMin = null;
-this.colourFromLabel = null;
-this.threshline = null;
-Clazz.instantialize (this, arguments);
-}, jalview.appletgui, "FeatureColourChooser", awt2swing.Panel, [java.awt.event.ActionListener, java.awt.event.AdjustmentListener, java.awt.event.ItemListener, java.awt.event.MouseListener]);
-Clazz.prepareFields (c$, function () {
-this.minColour =  new awt2swing.Panel ();
-this.maxColour =  new awt2swing.Panel ();
-this.jPanel1 =  new awt2swing.Panel ();
-this.jPanel2 =  new awt2swing.Panel ();
-this.threshold =  new awt2swing.Choice ();
-this.jPanel3 =  new awt2swing.Panel ();
-this.jPanel4 =  new awt2swing.Panel ();
-this.slider =  new awt2swing.Scrollbar (0);
-this.thresholdValue =  new awt2swing.TextField (20);
-this.thresholdIsMin =  new awt2swing.Checkbox ();
-this.colourFromLabel =  new awt2swing.Checkbox ();
-});
-Clazz.makeConstructor (c$, 
-function (af, type) {
-Clazz.superConstructor (this, jalview.appletgui.FeatureColourChooser, []);
-this.af = af;
-this.init (af.getSeqcanvas ().getFeatureRenderer (), type);
-}, "jalview.appletgui.AlignFrame,~S");
-Clazz.makeConstructor (c$, 
-function (fsettings, type) {
-Clazz.superConstructor (this, jalview.appletgui.FeatureColourChooser, []);
-this.fs = fsettings;
-this.init (fsettings.fr, type);
-}, "jalview.appletgui.FeatureSettings,~S");
-Clazz.defineMethod (c$, "init", 
- function (frenderer, type) {
-this.type = type;
-this.fr = frenderer;
-var mm = (this.fr.getMinMax ().get (type))[0];
-this.min = mm[0];
-this.max = mm[1];
-this.oldcs = this.fr.getFeatureColours ().get (type);
-if (Clazz.instanceOf (this.oldcs, jalview.schemes.GraduatedColor)) {
-this.cs =  new jalview.schemes.GraduatedColor (this.oldcs, this.min, this.max);
-} else {
-var bl = java.awt.Color.black;
-if (Clazz.instanceOf (this.oldcs, java.awt.Color)) {
-bl = this.oldcs;
-}this.cs =  new jalview.schemes.GraduatedColor (java.awt.Color.white, bl, mm[0], mm[1]);
-}this.minColour.setBackground (this.cs.getMinColor ());
-this.maxColour.setBackground (this.cs.getMaxColor ());
-this.minColour.setForeground (this.cs.getMinColor ());
-this.maxColour.setForeground (this.cs.getMaxColor ());
-this.colourFromLabel.setState (this.cs.isColourByLabel ());
-this.adjusting = true;
-try {
-this.jbInit ();
-} catch (ex) {
-if (Clazz.exceptionOf (ex, Exception)) {
-} else {
-throw ex;
-}
-}
-this.threshold.select (new Integer (this.cs.getThreshType () == -1 ? 0 : this.cs.getThreshType () == 1 ? 1 : 2));
-this.adjusting = false;
-this.changeColour ();
-this.colourFromLabel.addItemListener (this);
-this.slider.addAdjustmentListener (this);
-this.slider.addMouseListener (this);
-this.owner = (this.af != null) ? this.af : this.fs.frame;
-this.frame =  new jalview.appletgui.JVDialog (this.owner, jalview.util.MessageManager.formatMessage ("label.graduated_color_for_params",  Clazz.newArray (-1, [type])), true, 480, 248);
-this.frame.setMainPanel (this);
-this.validate ();
-this.frame.setVisible (true);
-if (this.frame.accept) {
-this.changeColour ();
-} else {
-this.reset ();
-jalview.appletgui.PaintRefresher.Refresh (this, this.fr.getViewport ().getSequenceSetId ());
-this.frame.setVisible (false);
-}}, "jalview.appletgui.FeatureRenderer,~S");
-Clazz.makeConstructor (c$, 
-function () {
-Clazz.superConstructor (this, jalview.appletgui.FeatureColourChooser, []);
-try {
-this.jbInit ();
-} catch (ex) {
-if (Clazz.exceptionOf (ex, Exception)) {
-ex.printStackTrace ();
-} else {
-throw ex;
-}
-}
-});
-Clazz.defineMethod (c$, "jbInit", 
- function () {
-var minLabel =  new awt2swing.Label (jalview.util.MessageManager.getString ("label.min"));
-var maxLabel =  new awt2swing.Label (jalview.util.MessageManager.getString ("label.max"));
-minLabel.setFont ( new java.awt.Font ("Verdana", 0, 11));
-maxLabel.setFont ( new java.awt.Font ("Verdana", 0, 11));
-this.minColour.setBounds (0, 0, 40, 27);
-this.maxColour.setBounds (0, 0, 40, 27);
-this.minColour.addMouseListener (this);
-this.maxColour.setFont ( new java.awt.Font ("Verdana", 0, 11));
-this.maxColour.addMouseListener (this);
-this.thresholdIsMin.addItemListener (this);
-this.setLayout ( new java.awt.GridLayout (4, 1));
-this.jPanel1.setLayout ( new java.awt.FlowLayout ());
-this.jPanel2.setLayout ( new java.awt.FlowLayout ());
-this.jPanel3.setLayout ( new java.awt.GridLayout (1, 1));
-this.jPanel4.setLayout ( new java.awt.FlowLayout ());
-this.jPanel1.setBackground (java.awt.Color.white);
-this.jPanel2.setBackground (java.awt.Color.white);
-this.jPanel4.setBackground (java.awt.Color.white);
-this.threshold.addItemListener (this);
-this.threshold.addItem (jalview.util.MessageManager.getString ("label.threshold_feature_no_thereshold"));
-this.threshold.addItem (jalview.util.MessageManager.getString ("label.threshold_feature_above_thereshold"));
-this.threshold.addItem (jalview.util.MessageManager.getString ("label.threshold_feature_below_thereshold"));
-this.thresholdValue.addActionListener (this);
-this.slider.setBackground (java.awt.Color.white);
-this.slider.setEnabled (false);
-this.slider.setSize ( new java.awt.Dimension (93, 21));
-this.thresholdValue.setEnabled (false);
-this.thresholdValue.setSize ( new java.awt.Dimension (79, 22));
-this.thresholdValue.setColumns (5);
-this.jPanel3.setBackground (java.awt.Color.white);
-this.colourFromLabel.setFont ( new java.awt.Font ("Verdana", 0, 11));
-this.colourFromLabel.setLabel (jalview.util.MessageManager.getString ("label.colour_by_label"));
-this.colourFromLabel.setSize ( new java.awt.Dimension (139, 22));
-this.thresholdIsMin.setBackground (java.awt.Color.white);
-this.thresholdIsMin.setLabel (jalview.util.MessageManager.getString ("label.threshold_minmax"));
-this.thresholdIsMin.setSize ( new java.awt.Dimension (135, 23));
-this.jPanel1.add (minLabel);
-this.jPanel1.add (this.minColour);
-this.jPanel1.add (maxLabel);
-this.jPanel1.add (this.maxColour);
-this.jPanel1.add (this.colourFromLabel);
-this.jPanel2.add (this.threshold);
-this.jPanel3.add (this.slider);
-this.jPanel4.add (this.thresholdValue);
-this.jPanel4.add (this.thresholdIsMin);
-this.add (this.jPanel1);
-this.add (this.jPanel2);
-this.add (this.jPanel3);
-this.add (this.jPanel4);
-});
-Clazz.overrideMethod (c$, "actionPerformed", 
-function (evt) {
-if (evt.getSource () === this.thresholdValue) {
-try {
-var f =  new Float (this.thresholdValue.getText ()).floatValue ();
-this.slider.setValue (Clazz.floatToInt (f * 1000));
-this.adjustmentValueChanged (null);
-} catch (ex) {
-if (Clazz.exceptionOf (ex, NumberFormatException)) {
-} else {
-throw ex;
-}
-}
-} else if (evt.getSource () === this.minColour) {
-this.minColour_actionPerformed (null);
-} else if (evt.getSource () === this.maxColour) {
-this.maxColour_actionPerformed (null);
-} else {
-this.changeColour ();
-}}, "java.awt.event.ActionEvent");
-Clazz.overrideMethod (c$, "itemStateChanged", 
-function (evt) {
-this.maxColour.setEnabled (!this.colourFromLabel.getState ());
-this.minColour.setEnabled (!this.colourFromLabel.getState ());
-this.changeColour ();
-}, "java.awt.event.ItemEvent");
-Clazz.overrideMethod (c$, "adjustmentValueChanged", 
-function (evt) {
-if (!this.adjusting) {
-this.thresholdValue.setText ((this.slider.getValue () / 1000) + "");
-this.valueChanged ();
-}}, "java.awt.event.AdjustmentEvent");
-Clazz.defineMethod (c$, "valueChanged", 
-function () {
-this.threshline.value = this.slider.getValue () / 1000;
-this.cs.setThresh (this.threshline.value);
-this.changeColour ();
-jalview.appletgui.PaintRefresher.Refresh (this, this.fr.getViewport ().getSequenceSetId ());
-});
-Clazz.defineMethod (c$, "minColour_actionPerformed", 
-function (newCol) {
-if (newCol == null) {
-var udc =  new jalview.appletgui.UserDefinedColours (this, this.minColour.getBackground (), this.owner, jalview.util.MessageManager.getString ("label.select_colour_minimum_value"));
-} else {
-this.minColour.setBackground (newCol);
-this.minColour.setForeground (newCol);
-this.minColour.repaint ();
-this.changeColour ();
-}}, "java.awt.Color");
-Clazz.defineMethod (c$, "maxColour_actionPerformed", 
-function (newCol) {
-if (newCol == null) {
-var udc =  new jalview.appletgui.UserDefinedColours (this, this.maxColour.getBackground (), this.owner, jalview.util.MessageManager.getString ("label.select_colour_maximum_value"));
-} else {
-this.maxColour.setBackground (newCol);
-this.maxColour.setForeground (newCol);
-this.maxColour.repaint ();
-this.changeColour ();
-}}, "java.awt.Color");
-Clazz.defineMethod (c$, "changeColour", 
-function () {
-if (this.adjusting) {
-return;
-}var aboveThreshold = -1;
-if (this.threshold.getSelectedIndex () == 1) {
-aboveThreshold = 1;
-} else if (this.threshold.getSelectedIndex () == 2) {
-aboveThreshold = 0;
-}this.slider.setEnabled (true);
-this.thresholdValue.setEnabled (true);
-var acg =  new jalview.schemes.GraduatedColor (this.minColour.getBackground (), this.maxColour.getBackground (), this.min, this.max);
-acg.setColourByLabel (this.colourFromLabel.getState ());
-this.maxColour.setEnabled (!this.colourFromLabel.getState ());
-this.minColour.setEnabled (!this.colourFromLabel.getState ());
-if (aboveThreshold == -1) {
-this.slider.setEnabled (false);
-this.thresholdValue.setEnabled (false);
-this.thresholdValue.setText ("");
-} else if (aboveThreshold != -1 && this.threshline == null) {
-this.threshline =  new jalview.datamodel.GraphLine ((this.max - this.min) / 2, "Threshold", java.awt.Color.black);
-}if (aboveThreshold != -1) {
-this.adjusting = true;
-acg.setThresh (this.threshline.value);
-var range = this.max * 1000 - this.min * 1000;
-this.slider.setMinimum (Clazz.floatToInt (this.min * 1000));
-this.slider.setMaximum (Clazz.floatToInt (this.max * 1000));
-this.slider.setValue (Clazz.floatToInt (this.threshline.value * 1000));
-this.thresholdValue.setText (this.threshline.value + "");
-this.slider.setEnabled (true);
-this.thresholdValue.setEnabled (true);
-this.adjusting = false;
-}acg.setThreshType (aboveThreshold);
-if (this.thresholdIsMin.getState () && aboveThreshold != -1) {
-if (aboveThreshold == 1) {
-acg =  new jalview.schemes.GraduatedColor (acg, this.threshline.value, this.max);
-} else {
-acg =  new jalview.schemes.GraduatedColor (acg, this.min, this.threshline.value);
-}}this.fr.setColour (this.type, acg);
-this.cs = acg;
-jalview.appletgui.PaintRefresher.Refresh (this, this.fr.getViewport ().getSequenceSetId ());
-});
-Clazz.defineMethod (c$, "reset", 
-function () {
-this.fr.setColour (this.type, this.oldcs);
-jalview.appletgui.PaintRefresher.Refresh (this, this.fr.getViewport ().getSequenceSetId ());
-});
-Clazz.overrideMethod (c$, "mouseClicked", 
-function (evt) {
-}, "java.awt.event.MouseEvent");
-Clazz.overrideMethod (c$, "mousePressed", 
-function (evt) {
-}, "java.awt.event.MouseEvent");
-Clazz.overrideMethod (c$, "mouseReleased", 
-function (evt) {
-if (evt.getSource () === this.minColour || evt.getSource () === this.maxColour) {
-this.actionPerformed ( new java.awt.event.ActionEvent (evt.getSource (), 1, "Clicked"));
-} else {
-jalview.appletgui.PaintRefresher.Refresh (this, this.fr.getViewport ().getSequenceSetId ());
-}}, "java.awt.event.MouseEvent");
-Clazz.overrideMethod (c$, "mouseEntered", 
-function (evt) {
-}, "java.awt.event.MouseEvent");
-Clazz.overrideMethod (c$, "mouseExited", 
-function (evt) {
-}, "java.awt.event.MouseEvent");
-});
+Clazz.declarePackage ("jalview.appletgui");
+Clazz.load (["awt2swing.Panel", "java.awt.event.ActionListener", "$.AdjustmentListener", "$.ItemListener", "$.MouseListener", "awt2swing.Checkbox", "$.Choice", "$.Scrollbar", "$.TextField"], "jalview.appletgui.FeatureColourChooser", ["awt2swing.Label", "jalview.appletgui.JVDialog", "$.PaintRefresher", "$.UserDefinedColours", "jalview.datamodel.GraphLine", "jalview.schemes.GraduatedColor", "jalview.util.MessageManager", "java.awt.Color", "$.Dimension", "$.FlowLayout", "$.Font", "$.GridLayout", "java.awt.event.ActionEvent", "java.lang.Float"], function () {
+c$ = Clazz.decorateAsClass (function () {
+this.frame = null;
+this.owner = null;
+this.fr = null;
+this.fs = null;
+this.cs = null;
+this.oldcs = null;
+this.oldgroupColours = null;
+this.adjusting = false;
+this.min = 0;
+this.max = 0;
+this.type = null;
+this.af = null;
+this.minColour = null;
+this.maxColour = null;
+this.jPanel1 = null;
+this.jPanel2 = null;
+this.threshold = null;
+this.jPanel3 = null;
+this.jPanel4 = null;
+this.slider = null;
+this.thresholdValue = null;
+this.thresholdIsMin = null;
+this.colourFromLabel = null;
+this.threshline = null;
+Clazz.instantialize (this, arguments);
+}, jalview.appletgui, "FeatureColourChooser", awt2swing.Panel, [java.awt.event.ActionListener, java.awt.event.AdjustmentListener, java.awt.event.ItemListener, java.awt.event.MouseListener]);
+Clazz.prepareFields (c$, function () {
+this.minColour =  new awt2swing.Panel ();
+this.maxColour =  new awt2swing.Panel ();
+this.jPanel1 =  new awt2swing.Panel ();
+this.jPanel2 =  new awt2swing.Panel ();
+this.threshold =  new awt2swing.Choice ();
+this.jPanel3 =  new awt2swing.Panel ();
+this.jPanel4 =  new awt2swing.Panel ();
+this.slider =  new awt2swing.Scrollbar (0);
+this.thresholdValue =  new awt2swing.TextField (20);
+this.thresholdIsMin =  new awt2swing.Checkbox ();
+this.colourFromLabel =  new awt2swing.Checkbox ();
+});
+Clazz.makeConstructor (c$, 
+function (af, type) {
+Clazz.superConstructor (this, jalview.appletgui.FeatureColourChooser, []);
+this.af = af;
+this.init (af.getSeqcanvas ().getFeatureRenderer (), type);
+}, "jalview.appletgui.AlignFrame,~S");
+Clazz.makeConstructor (c$, 
+function (fsettings, type) {
+Clazz.superConstructor (this, jalview.appletgui.FeatureColourChooser, []);
+this.fs = fsettings;
+this.init (fsettings.fr, type);
+}, "jalview.appletgui.FeatureSettings,~S");
+Clazz.defineMethod (c$, "init", 
+ function (frenderer, type) {
+this.type = type;
+this.fr = frenderer;
+var mm = (this.fr.getMinMax ().get (type))[0];
+this.min = mm[0];
+this.max = mm[1];
+this.oldcs = this.fr.getFeatureColours ().get (type);
+if (Clazz.instanceOf (this.oldcs, jalview.schemes.GraduatedColor)) {
+this.cs =  new jalview.schemes.GraduatedColor (this.oldcs, this.min, this.max);
+} else {
+var bl = java.awt.Color.black;
+if (Clazz.instanceOf (this.oldcs, java.awt.Color)) {
+bl = this.oldcs;
+}this.cs =  new jalview.schemes.GraduatedColor (java.awt.Color.white, bl, mm[0], mm[1]);
+}this.minColour.setBackground (this.cs.getMinColor ());
+this.maxColour.setBackground (this.cs.getMaxColor ());
+this.minColour.setForeground (this.cs.getMinColor ());
+this.maxColour.setForeground (this.cs.getMaxColor ());
+this.colourFromLabel.setState (this.cs.isColourByLabel ());
+this.adjusting = true;
+try {
+this.jbInit ();
+} catch (ex) {
+if (Clazz.exceptionOf (ex, Exception)) {
+} else {
+throw ex;
+}
+}
+this.threshold.select (new Integer (this.cs.getThreshType () == -1 ? 0 : this.cs.getThreshType () == 1 ? 1 : 2));
+this.adjusting = false;
+this.changeColour ();
+this.colourFromLabel.addItemListener (this);
+this.slider.addAdjustmentListener (this);
+this.slider.addMouseListener (this);
+this.owner = (this.af != null) ? this.af : this.fs.frame;
+this.frame =  new jalview.appletgui.JVDialog (this.owner, jalview.util.MessageManager.formatMessage ("label.graduated_color_for_params",  Clazz.newArray (-1, [type])), true, 480, 248);
+this.frame.setMainPanel (this);
+this.validate ();
+this.frame.setVisible (true);
+if (this.frame.accept) {
+this.changeColour ();
+} else {
+this.reset ();
+jalview.appletgui.PaintRefresher.Refresh (this, this.fr.getViewport ().getSequenceSetId ());
+this.frame.setVisible (false);
+}}, "jalview.appletgui.FeatureRenderer,~S");
+Clazz.makeConstructor (c$, 
+function () {
+Clazz.superConstructor (this, jalview.appletgui.FeatureColourChooser, []);
+try {
+this.jbInit ();
+} catch (ex) {
+if (Clazz.exceptionOf (ex, Exception)) {
+ex.printStackTrace ();
+} else {
+throw ex;
+}
+}
+});
+Clazz.defineMethod (c$, "jbInit", 
+ function () {
+var minLabel =  new awt2swing.Label (jalview.util.MessageManager.getString ("label.min"));
+var maxLabel =  new awt2swing.Label (jalview.util.MessageManager.getString ("label.max"));
+minLabel.setFont ( new java.awt.Font ("Verdana", 0, 11));
+maxLabel.setFont ( new java.awt.Font ("Verdana", 0, 11));
+this.minColour.setBounds (0, 0, 40, 27);
+this.maxColour.setBounds (0, 0, 40, 27);
+this.minColour.addMouseListener (this);
+this.maxColour.setFont ( new java.awt.Font ("Verdana", 0, 11));
+this.maxColour.addMouseListener (this);
+this.thresholdIsMin.addItemListener (this);
+this.setLayout ( new java.awt.GridLayout (4, 1));
+this.jPanel1.setLayout ( new java.awt.FlowLayout ());
+this.jPanel2.setLayout ( new java.awt.FlowLayout ());
+this.jPanel3.setLayout ( new java.awt.GridLayout (1, 1));
+this.jPanel4.setLayout ( new java.awt.FlowLayout ());
+this.jPanel1.setBackground (java.awt.Color.white);
+this.jPanel2.setBackground (java.awt.Color.white);
+this.jPanel4.setBackground (java.awt.Color.white);
+this.threshold.addItemListener (this);
+this.threshold.addItem (jalview.util.MessageManager.getString ("label.threshold_feature_no_thereshold"));
+this.threshold.addItem (jalview.util.MessageManager.getString ("label.threshold_feature_above_thereshold"));
+this.threshold.addItem (jalview.util.MessageManager.getString ("label.threshold_feature_below_thereshold"));
+this.thresholdValue.addActionListener (this);
+this.slider.setBackground (java.awt.Color.white);
+this.slider.setEnabled (false);
+this.slider.setSize ( new java.awt.Dimension (93, 21));
+this.thresholdValue.setEnabled (false);
+this.thresholdValue.setSize ( new java.awt.Dimension (79, 22));
+this.thresholdValue.setColumns (5);
+this.jPanel3.setBackground (java.awt.Color.white);
+this.colourFromLabel.setFont ( new java.awt.Font ("Verdana", 0, 11));
+this.colourFromLabel.setLabel (jalview.util.MessageManager.getString ("label.colour_by_label"));
+this.colourFromLabel.setSize ( new java.awt.Dimension (139, 22));
+this.thresholdIsMin.setBackground (java.awt.Color.white);
+this.thresholdIsMin.setLabel (jalview.util.MessageManager.getString ("label.threshold_minmax"));
+this.thresholdIsMin.setSize ( new java.awt.Dimension (135, 23));
+this.jPanel1.add (minLabel);
+this.jPanel1.add (this.minColour);
+this.jPanel1.add (maxLabel);
+this.jPanel1.add (this.maxColour);
+this.jPanel1.add (this.colourFromLabel);
+this.jPanel2.add (this.threshold);
+this.jPanel3.add (this.slider);
+this.jPanel4.add (this.thresholdValue);
+this.jPanel4.add (this.thresholdIsMin);
+this.add (this.jPanel1);
+this.add (this.jPanel2);
+this.add (this.jPanel3);
+this.add (this.jPanel4);
+});
+Clazz.overrideMethod (c$, "actionPerformed", 
+function (evt) {
+if (evt.getSource () === this.thresholdValue) {
+try {
+var f =  new Float (this.thresholdValue.getText ()).floatValue ();
+this.slider.setValue (Clazz.floatToInt (f * 1000));
+this.adjustmentValueChanged (null);
+} catch (ex) {
+if (Clazz.exceptionOf (ex, NumberFormatException)) {
+} else {
+throw ex;
+}
+}
+} else if (evt.getSource () === this.minColour) {
+this.minColour_actionPerformed (null);
+} else if (evt.getSource () === this.maxColour) {
+this.maxColour_actionPerformed (null);
+} else {
+this.changeColour ();
+}}, "java.awt.event.ActionEvent");
+Clazz.overrideMethod (c$, "itemStateChanged", 
+function (evt) {
+this.maxColour.setEnabled (!this.colourFromLabel.getState ());
+this.minColour.setEnabled (!this.colourFromLabel.getState ());
+this.changeColour ();
+}, "java.awt.event.ItemEvent");
+Clazz.overrideMethod (c$, "adjustmentValueChanged", 
+function (evt) {
+if (!this.adjusting) {
+this.thresholdValue.setText ((this.slider.getValue () / 1000) + "");
+this.valueChanged ();
+}}, "java.awt.event.AdjustmentEvent");
+Clazz.defineMethod (c$, "valueChanged", 
+function () {
+this.threshline.value = this.slider.getValue () / 1000;
+this.cs.setThresh (this.threshline.value);
+this.changeColour ();
+jalview.appletgui.PaintRefresher.Refresh (this, this.fr.getViewport ().getSequenceSetId ());
+});
+Clazz.defineMethod (c$, "minColour_actionPerformed", 
+function (newCol) {
+if (newCol == null) {
+var udc =  new jalview.appletgui.UserDefinedColours (this, this.minColour.getBackground (), this.owner, jalview.util.MessageManager.getString ("label.select_colour_minimum_value"));
+} else {
+this.minColour.setBackground (newCol);
+this.minColour.setForeground (newCol);
+this.minColour.repaint ();
+this.changeColour ();
+}}, "java.awt.Color");
+Clazz.defineMethod (c$, "maxColour_actionPerformed", 
+function (newCol) {
+if (newCol == null) {
+var udc =  new jalview.appletgui.UserDefinedColours (this, this.maxColour.getBackground (), this.owner, jalview.util.MessageManager.getString ("label.select_colour_maximum_value"));
+} else {
+this.maxColour.setBackground (newCol);
+this.maxColour.setForeground (newCol);
+this.maxColour.repaint ();
+this.changeColour ();
+}}, "java.awt.Color");
+Clazz.defineMethod (c$, "changeColour", 
+function () {
+if (this.adjusting) {
+return;
+}var aboveThreshold = -1;
+if (this.threshold.getSelectedIndex () == 1) {
+aboveThreshold = 1;
+} else if (this.threshold.getSelectedIndex () == 2) {
+aboveThreshold = 0;
+}this.slider.setEnabled (true);
+this.thresholdValue.setEnabled (true);
+var acg =  new jalview.schemes.GraduatedColor (this.minColour.getBackground (), this.maxColour.getBackground (), this.min, this.max);
+acg.setColourByLabel (this.colourFromLabel.getState ());
+this.maxColour.setEnabled (!this.colourFromLabel.getState ());
+this.minColour.setEnabled (!this.colourFromLabel.getState ());
+if (aboveThreshold == -1) {
+this.slider.setEnabled (false);
+this.thresholdValue.setEnabled (false);
+this.thresholdValue.setText ("");
+} else if (aboveThreshold != -1 && this.threshline == null) {
+this.threshline =  new jalview.datamodel.GraphLine ((this.max - this.min) / 2, "Threshold", java.awt.Color.black);
+}if (aboveThreshold != -1) {
+this.adjusting = true;
+acg.setThresh (this.threshline.value);
+var range = this.max * 1000 - this.min * 1000;
+this.slider.setMinimum (Clazz.floatToInt (this.min * 1000));
+this.slider.setMaximum (Clazz.floatToInt (this.max * 1000));
+this.slider.setValue (Clazz.floatToInt (this.threshline.value * 1000));
+this.thresholdValue.setText (this.threshline.value + "");
+this.slider.setEnabled (true);
+this.thresholdValue.setEnabled (true);
+this.adjusting = false;
+}acg.setThreshType (aboveThreshold);
+if (this.thresholdIsMin.getState () && aboveThreshold != -1) {
+if (aboveThreshold == 1) {
+acg =  new jalview.schemes.GraduatedColor (acg, this.threshline.value, this.max);
+} else {
+acg =  new jalview.schemes.GraduatedColor (acg, this.min, this.threshline.value);
+}}this.fr.setColour (this.type, acg);
+this.cs = acg;
+jalview.appletgui.PaintRefresher.Refresh (this, this.fr.getViewport ().getSequenceSetId ());
+});
+Clazz.defineMethod (c$, "reset", 
+function () {
+this.fr.setColour (this.type, this.oldcs);
+jalview.appletgui.PaintRefresher.Refresh (this, this.fr.getViewport ().getSequenceSetId ());
+});
+Clazz.overrideMethod (c$, "mouseClicked", 
+function (evt) {
+}, "java.awt.event.MouseEvent");
+Clazz.overrideMethod (c$, "mousePressed", 
+function (evt) {
+}, "java.awt.event.MouseEvent");
+Clazz.overrideMethod (c$, "mouseReleased", 
+function (evt) {
+if (evt.getSource () === this.minColour || evt.getSource () === this.maxColour) {
+this.actionPerformed ( new java.awt.event.ActionEvent (evt.getSource (), 1, "Clicked"));
+} else {
+jalview.appletgui.PaintRefresher.Refresh (this, this.fr.getViewport ().getSequenceSetId ());
+}}, "java.awt.event.MouseEvent");
+Clazz.overrideMethod (c$, "mouseEntered", 
+function (evt) {
+}, "java.awt.event.MouseEvent");
+Clazz.overrideMethod (c$, "mouseExited", 
+function (evt) {
+}, "java.awt.event.MouseEvent");
+});