X-Git-Url: http://source.jalview.org/gitweb/?p=jalviewjs.git;a=blobdiff_plain;f=site%2Fj2s%2Fjalview%2Fcommands%2FRemoveGapColCommand.js;h=511279b708e608be86dafa23df16e5b6b95f8b27;hp=a41e76e439276567b254d4d8cd864ff01e232e80;hb=b9b7a352eee79b7764c3b09c9d19663075061d8c;hpb=7301a2415adab88038b291fc54caeeb3a5a47a44

diff --git a/site/j2s/jalview/commands/RemoveGapColCommand.js b/site/j2s/jalview/commands/RemoveGapColCommand.js
index a41e76e..511279b 100644
--- a/site/j2s/jalview/commands/RemoveGapColCommand.js
+++ b/site/j2s/jalview/commands/RemoveGapColCommand.js
@@ -1,45 +1,45 @@
-Clazz.declarePackage ("jalview.commands");
-Clazz.load (["jalview.commands.EditCommand"], "jalview.commands.RemoveGapColCommand", ["jalview.util.Comparison"], function () {
-c$ = Clazz.decorateAsClass (function () {
-this.columnsDeleted = 0;
-Clazz.instantialize (this, arguments);
-}, jalview.commands, "RemoveGapColCommand", jalview.commands.EditCommand);
-Clazz.makeConstructor (c$, 
-function (description, seqs, start, end, al) {
-Clazz.superConstructor (this, jalview.commands.RemoveGapColCommand, []);
-this.description = description;
-var j;
-var jSize = seqs.length;
-var startCol = -1;
-var endCol = -1;
-this.columnsDeleted = 0;
-this.clearEdits ();
-var $delete = true;
-for (var i = start; i <= end; i++) {
-$delete = true;
-for (j = 0; j < jSize; j++) {
-if (seqs[j].getLength () > i) {
-if (!jalview.util.Comparison.isGap (seqs[j].getCharAt (i))) {
-if ($delete) {
-endCol = i;
-}$delete = false;
-break;
-}}}
-if ($delete && startCol == -1) {
-startCol = i;
-}if (!$delete && startCol > -1) {
-this.appendEdit (jalview.commands.EditCommand.Action.DELETE_GAP, seqs, startCol - this.columnsDeleted, endCol - startCol, al, false, null);
-this.columnsDeleted += (endCol - startCol);
-startCol = -1;
-endCol = -1;
-}}
-if ($delete && startCol > -1) {
-this.appendEdit (jalview.commands.EditCommand.Action.DELETE_GAP, seqs, startCol - this.columnsDeleted, end - startCol + 1, al, false, null);
-this.columnsDeleted += (end - startCol + 1);
-}this.performEdit (0, null);
-}, "~S,~A,~N,~N,jalview.datamodel.AlignmentI");
-Clazz.overrideMethod (c$, "getSize", 
-function () {
-return this.columnsDeleted;
-});
-});
+Clazz.declarePackage ("jalview.commands");
+Clazz.load (["jalview.commands.EditCommand"], "jalview.commands.RemoveGapColCommand", ["jalview.util.Comparison"], function () {
+c$ = Clazz.decorateAsClass (function () {
+this.columnsDeleted = 0;
+Clazz.instantialize (this, arguments);
+}, jalview.commands, "RemoveGapColCommand", jalview.commands.EditCommand);
+Clazz.makeConstructor (c$, 
+function (description, seqs, start, end, al) {
+Clazz.superConstructor (this, jalview.commands.RemoveGapColCommand, []);
+this.description = description;
+var j;
+var jSize = seqs.length;
+var startCol = -1;
+var endCol = -1;
+this.columnsDeleted = 0;
+this.clearEdits ();
+var $delete = true;
+for (var i = start; i <= end; i++) {
+$delete = true;
+for (j = 0; j < jSize; j++) {
+if (seqs[j].getLength () > i) {
+if (!jalview.util.Comparison.isGap (seqs[j].getCharAt (i))) {
+if ($delete) {
+endCol = i;
+}$delete = false;
+break;
+}}}
+if ($delete && startCol == -1) {
+startCol = i;
+}if (!$delete && startCol > -1) {
+this.appendEdit (jalview.commands.EditCommand.Action.DELETE_GAP, seqs, startCol - this.columnsDeleted, endCol - startCol, al, false, null);
+this.columnsDeleted += (endCol - startCol);
+startCol = -1;
+endCol = -1;
+}}
+if ($delete && startCol > -1) {
+this.appendEdit (jalview.commands.EditCommand.Action.DELETE_GAP, seqs, startCol - this.columnsDeleted, end - startCol + 1, al, false, null);
+this.columnsDeleted += (end - startCol + 1);
+}this.performEdit (0, null);
+}, "~S,~A,~N,~N,jalview.datamodel.AlignmentI");
+Clazz.overrideMethod (c$, "getSize", 
+function () {
+return this.columnsDeleted;
+});
+});