X-Git-Url: http://source.jalview.org/gitweb/?p=jalviewjs.git;a=blobdiff_plain;f=site%2Fj2s%2Fjalview%2Fdatamodel%2FBinaryNode.js;h=7575508666bd8f608e067e45b36b681676e4c552;hp=64fb764696fc6a63db5e1518147428b667e0dbb5;hb=b9b7a352eee79b7764c3b09c9d19663075061d8c;hpb=8ffd05b3abe52c0b6b79b011c0966361f82d5fe6

diff --git a/site/j2s/jalview/datamodel/BinaryNode.js b/site/j2s/jalview/datamodel/BinaryNode.js
index 64fb764..7575508 100644
--- a/site/j2s/jalview/datamodel/BinaryNode.js
+++ b/site/j2s/jalview/datamodel/BinaryNode.js
@@ -1,112 +1,112 @@
-Clazz.declarePackage ("jalview.datamodel");
-c$ = Clazz.decorateAsClass (function () {
-this.$element = null;
-this.name = null;
-this.$left = null;
-this.$right = null;
-this.$parent = null;
-this.bootstrap = 0;
-Clazz.instantialize (this, arguments);
-}, jalview.datamodel, "BinaryNode");
-Clazz.makeConstructor (c$, 
-function () {
-this.$left = this.$right = this.$parent = null;
-this.bootstrap = 0;
-});
-Clazz.makeConstructor (c$, 
-function (element, parent, name) {
-this.$element = element;
-this.$parent = parent;
-this.name = name;
-this.$left = this.$right = null;
-}, "~O,jalview.datamodel.BinaryNode,~S");
-Clazz.defineMethod (c$, "element", 
-function () {
-return this.$element;
-});
-Clazz.defineMethod (c$, "setElement", 
-function (v) {
-return this.$element = v;
-}, "~O");
-Clazz.defineMethod (c$, "left", 
-function () {
-return this.$left;
-});
-Clazz.defineMethod (c$, "setLeft", 
-function (n) {
-return this.$left = n;
-}, "jalview.datamodel.BinaryNode");
-Clazz.defineMethod (c$, "right", 
-function () {
-return this.$right;
-});
-Clazz.defineMethod (c$, "setRight", 
-function (n) {
-return this.$right = n;
-}, "jalview.datamodel.BinaryNode");
-Clazz.defineMethod (c$, "parent", 
-function () {
-return this.$parent;
-});
-Clazz.defineMethod (c$, "setParent", 
-function (n) {
-return this.$parent = n;
-}, "jalview.datamodel.BinaryNode");
-Clazz.defineMethod (c$, "isLeaf", 
-function () {
-return (this.$left == null) && (this.$right == null);
-});
-Clazz.defineMethod (c$, "SetChildren", 
-function (leftchild, rightchild) {
-if (leftchild != null) {
-this.setLeft (leftchild);
-leftchild.detach ();
-leftchild.setParent (this);
-}if (rightchild != null) {
-this.setRight (rightchild);
-rightchild.detach ();
-rightchild.setParent (this);
-}}, "jalview.datamodel.BinaryNode,jalview.datamodel.BinaryNode");
-Clazz.defineMethod (c$, "detach", 
-function () {
-if (this.$parent != null) {
-if (this.$parent.$left === this) {
-this.$parent.$left = null;
-} else {
-if (this.$parent.$right === this) {
-this.$parent.$right = null;
-}}}this.$parent = null;
-return this;
-});
-Clazz.defineMethod (c$, "ascendLeft", 
-function () {
-var c = this;
-do {
-c = c.parent ();
-} while ((c != null) && (c.left () != null) && !c.left ().isLeaf ());
-return c;
-});
-Clazz.defineMethod (c$, "ascendRight", 
-function () {
-var c = this;
-do {
-c = c.parent ();
-} while ((c != null) && (c.right () != null) && !c.right ().isLeaf ());
-return c;
-});
-Clazz.defineMethod (c$, "setName", 
-function (name) {
-this.name = name;
-}, "~S");
-Clazz.defineMethod (c$, "getName", 
-function () {
-return this.name;
-});
-Clazz.defineMethod (c$, "setBootstrap", 
-function (boot) {
-this.bootstrap = boot;
-}, "~N");
-Clazz.defineMethod (c$, "getBootstrap", 
-function () {
-return this.bootstrap;
-});
+Clazz.declarePackage ("jalview.datamodel");
+c$ = Clazz.decorateAsClass (function () {
+this.$element = null;
+this.name = null;
+this.$left = null;
+this.$right = null;
+this.$parent = null;
+this.bootstrap = 0;
+Clazz.instantialize (this, arguments);
+}, jalview.datamodel, "BinaryNode");
+Clazz.makeConstructor (c$, 
+function () {
+this.$left = this.$right = this.$parent = null;
+this.bootstrap = 0;
+});
+Clazz.makeConstructor (c$, 
+function (element, parent, name) {
+this.$element = element;
+this.$parent = parent;
+this.name = name;
+this.$left = this.$right = null;
+}, "~O,jalview.datamodel.BinaryNode,~S");
+Clazz.defineMethod (c$, "element", 
+function () {
+return this.$element;
+});
+Clazz.defineMethod (c$, "setElement", 
+function (v) {
+return this.$element = v;
+}, "~O");
+Clazz.defineMethod (c$, "left", 
+function () {
+return this.$left;
+});
+Clazz.defineMethod (c$, "setLeft", 
+function (n) {
+return this.$left = n;
+}, "jalview.datamodel.BinaryNode");
+Clazz.defineMethod (c$, "right", 
+function () {
+return this.$right;
+});
+Clazz.defineMethod (c$, "setRight", 
+function (n) {
+return this.$right = n;
+}, "jalview.datamodel.BinaryNode");
+Clazz.defineMethod (c$, "parent", 
+function () {
+return this.$parent;
+});
+Clazz.defineMethod (c$, "setParent", 
+function (n) {
+return this.$parent = n;
+}, "jalview.datamodel.BinaryNode");
+Clazz.defineMethod (c$, "isLeaf", 
+function () {
+return (this.$left == null) && (this.$right == null);
+});
+Clazz.defineMethod (c$, "SetChildren", 
+function (leftchild, rightchild) {
+if (leftchild != null) {
+this.setLeft (leftchild);
+leftchild.detach ();
+leftchild.setParent (this);
+}if (rightchild != null) {
+this.setRight (rightchild);
+rightchild.detach ();
+rightchild.setParent (this);
+}}, "jalview.datamodel.BinaryNode,jalview.datamodel.BinaryNode");
+Clazz.defineMethod (c$, "detach", 
+function () {
+if (this.$parent != null) {
+if (this.$parent.$left === this) {
+this.$parent.$left = null;
+} else {
+if (this.$parent.$right === this) {
+this.$parent.$right = null;
+}}}this.$parent = null;
+return this;
+});
+Clazz.defineMethod (c$, "ascendLeft", 
+function () {
+var c = this;
+do {
+c = c.parent ();
+} while ((c != null) && (c.left () != null) && !c.left ().isLeaf ());
+return c;
+});
+Clazz.defineMethod (c$, "ascendRight", 
+function () {
+var c = this;
+do {
+c = c.parent ();
+} while ((c != null) && (c.right () != null) && !c.right ().isLeaf ());
+return c;
+});
+Clazz.defineMethod (c$, "setName", 
+function (name) {
+this.name = name;
+}, "~S");
+Clazz.defineMethod (c$, "getName", 
+function () {
+return this.name;
+});
+Clazz.defineMethod (c$, "setBootstrap", 
+function (boot) {
+this.bootstrap = boot;
+}, "~N");
+Clazz.defineMethod (c$, "getBootstrap", 
+function () {
+return this.bootstrap;
+});