X-Git-Url: http://source.jalview.org/gitweb/?p=jalviewjs.git;a=blobdiff_plain;f=site%2Fj2s%2Fjalview%2Fdatamodel%2FDBRefSource.js;h=00d73376f43ce167370d757f5ca8cb1e8f194632;hp=587f6f3098585e97778048309d7dece7f838d097;hb=b9b7a352eee79b7764c3b09c9d19663075061d8c;hpb=7301a2415adab88038b291fc54caeeb3a5a47a44

diff --git a/site/j2s/jalview/datamodel/DBRefSource.js b/site/j2s/jalview/datamodel/DBRefSource.js
index 587f6f3..00d7337 100644
--- a/site/j2s/jalview/datamodel/DBRefSource.js
+++ b/site/j2s/jalview/datamodel/DBRefSource.js
@@ -1,29 +1,29 @@
-Clazz.declarePackage ("jalview.datamodel");
-c$ = Clazz.declareType (jalview.datamodel, "DBRefSource");
-Clazz.defineStatics (c$,
-"UNIPROT", "UNIPROT");
-c$.UP_NAME = c$.prototype.UP_NAME = "UNIPROT_NAME".toUpperCase ();
-c$.UNIPROTKB = c$.prototype.UNIPROTKB = "UniProtKB/TrEMBL".toUpperCase ();
-c$.EMBLCDSProduct = c$.prototype.EMBLCDSProduct = "EMBLCDSProtein".toUpperCase ();
-Clazz.defineStatics (c$,
-"PDB", "PDB",
-"EMBL", "EMBL",
-"EMBLCDS", "EMBLCDS",
-"PFAM", "PFAM",
-"RFAM", "RFAM");
-c$.GENEDB = c$.prototype.GENEDB = "GeneDB".toUpperCase ();
-c$.DNACODINGDBS = c$.prototype.DNACODINGDBS =  Clazz.newArray (-1, [jalview.datamodel.DBRefSource.EMBL, jalview.datamodel.DBRefSource.EMBLCDS, jalview.datamodel.DBRefSource.GENEDB]);
-c$.CODINGDBS = c$.prototype.CODINGDBS =  Clazz.newArray (-1, [jalview.datamodel.DBRefSource.EMBLCDS, jalview.datamodel.DBRefSource.GENEDB]);
-c$.PROTEINDBS = c$.prototype.PROTEINDBS =  Clazz.newArray (-1, [jalview.datamodel.DBRefSource.UNIPROT, jalview.datamodel.DBRefSource.PDB, jalview.datamodel.DBRefSource.UNIPROTKB, jalview.datamodel.DBRefSource.EMBLCDSProduct]);
-c$.PROTEINSEQ = c$.prototype.PROTEINSEQ =  Clazz.newArray (-1, [jalview.datamodel.DBRefSource.UNIPROT, jalview.datamodel.DBRefSource.UNIPROTKB, jalview.datamodel.DBRefSource.EMBLCDSProduct]);
-c$.PROTEINSTR = c$.prototype.PROTEINSTR =  Clazz.newArray (-1, [jalview.datamodel.DBRefSource.PDB]);
-c$.DOMAINDBS = c$.prototype.DOMAINDBS =  Clazz.newArray (-1, [jalview.datamodel.DBRefSource.PFAM, jalview.datamodel.DBRefSource.RFAM]);
-Clazz.defineStatics (c$,
-"SEQDB", "SQ",
-"DNASEQDB", "NASQ",
-"PROTSEQDB", "PROTSQ",
-"CODINGSEQDB", "CODING",
-"DNACODINGSEQDB", "XONCODING",
-"DOMAINDB", "DOMAIN",
-"MULTIACC", "MULTIACC",
-"ALIGNMENTDB", "ALIGNMENTS");
+Clazz.declarePackage ("jalview.datamodel");
+c$ = Clazz.declareType (jalview.datamodel, "DBRefSource");
+Clazz.defineStatics (c$,
+"UNIPROT", "UNIPROT");
+c$.UP_NAME = c$.prototype.UP_NAME = "UNIPROT_NAME".toUpperCase ();
+c$.UNIPROTKB = c$.prototype.UNIPROTKB = "UniProtKB/TrEMBL".toUpperCase ();
+c$.EMBLCDSProduct = c$.prototype.EMBLCDSProduct = "EMBLCDSProtein".toUpperCase ();
+Clazz.defineStatics (c$,
+"PDB", "PDB",
+"EMBL", "EMBL",
+"EMBLCDS", "EMBLCDS",
+"PFAM", "PFAM",
+"RFAM", "RFAM");
+c$.GENEDB = c$.prototype.GENEDB = "GeneDB".toUpperCase ();
+c$.DNACODINGDBS = c$.prototype.DNACODINGDBS =  Clazz.newArray (-1, [jalview.datamodel.DBRefSource.EMBL, jalview.datamodel.DBRefSource.EMBLCDS, jalview.datamodel.DBRefSource.GENEDB]);
+c$.CODINGDBS = c$.prototype.CODINGDBS =  Clazz.newArray (-1, [jalview.datamodel.DBRefSource.EMBLCDS, jalview.datamodel.DBRefSource.GENEDB]);
+c$.PROTEINDBS = c$.prototype.PROTEINDBS =  Clazz.newArray (-1, [jalview.datamodel.DBRefSource.UNIPROT, jalview.datamodel.DBRefSource.PDB, jalview.datamodel.DBRefSource.UNIPROTKB, jalview.datamodel.DBRefSource.EMBLCDSProduct]);
+c$.PROTEINSEQ = c$.prototype.PROTEINSEQ =  Clazz.newArray (-1, [jalview.datamodel.DBRefSource.UNIPROT, jalview.datamodel.DBRefSource.UNIPROTKB, jalview.datamodel.DBRefSource.EMBLCDSProduct]);
+c$.PROTEINSTR = c$.prototype.PROTEINSTR =  Clazz.newArray (-1, [jalview.datamodel.DBRefSource.PDB]);
+c$.DOMAINDBS = c$.prototype.DOMAINDBS =  Clazz.newArray (-1, [jalview.datamodel.DBRefSource.PFAM, jalview.datamodel.DBRefSource.RFAM]);
+Clazz.defineStatics (c$,
+"SEQDB", "SQ",
+"DNASEQDB", "NASQ",
+"PROTSEQDB", "PROTSQ",
+"CODINGSEQDB", "CODING",
+"DNACODINGSEQDB", "XONCODING",
+"DOMAINDB", "DOMAIN",
+"MULTIACC", "MULTIACC",
+"ALIGNMENTDB", "ALIGNMENTS");