X-Git-Url: http://source.jalview.org/gitweb/?p=jalviewjs.git;a=blobdiff_plain;f=site%2Fj2s%2Fjalview%2Fviewmodel%2Fseqfeatures%2FFeatureRendererSettings.js;h=187a38024176a767db82dacfd158650b6769f69f;hp=f166a1bd7a08b604c175ff8445540dc6b0eea9b1;hb=b9b7a352eee79b7764c3b09c9d19663075061d8c;hpb=7301a2415adab88038b291fc54caeeb3a5a47a44

diff --git a/site/j2s/jalview/viewmodel/seqfeatures/FeatureRendererSettings.js b/site/j2s/jalview/viewmodel/seqfeatures/FeatureRendererSettings.js
index f166a1b..187a380 100644
--- a/site/j2s/jalview/viewmodel/seqfeatures/FeatureRendererSettings.js
+++ b/site/j2s/jalview/viewmodel/seqfeatures/FeatureRendererSettings.js
@@ -1,43 +1,43 @@
-Clazz.declarePackage ("jalview.viewmodel.seqfeatures");
-Clazz.load (null, "jalview.viewmodel.seqfeatures.FeatureRendererSettings", ["jalview.schemes.GraduatedColor", "java.util.Arrays", "java.util.concurrent.ConcurrentHashMap"], function () {
-c$ = Clazz.decorateAsClass (function () {
-this.renderOrder = null;
-this.featureGroups = null;
-this.featureColours = null;
-this.transparency = 0;
-this.featureOrder = null;
-Clazz.instantialize (this, arguments);
-}, jalview.viewmodel.seqfeatures, "FeatureRendererSettings", null, Cloneable);
-Clazz.makeConstructor (c$, 
-function (renderOrder, featureGroups, featureColours, transparency, featureOrder) {
-this.renderOrder = java.util.Arrays.copyOf (renderOrder, renderOrder.length);
-this.featureGroups =  new java.util.concurrent.ConcurrentHashMap (featureGroups);
-this.featureColours =  new java.util.concurrent.ConcurrentHashMap (featureColours);
-this.transparency = transparency;
-this.featureOrder =  new java.util.concurrent.ConcurrentHashMap (featureOrder);
-}, "~A,java.util.Hashtable,java.util.Hashtable,~N,java.util.Hashtable");
-Clazz.makeConstructor (c$, 
-function (fr) {
-this.renderOrder = null;
-this.featureGroups =  new java.util.concurrent.ConcurrentHashMap ();
-this.featureColours =  new java.util.concurrent.ConcurrentHashMap ();
-this.featureOrder =  new java.util.concurrent.ConcurrentHashMap ();
-if (fr.renderOrder != null) {
-this.renderOrder =  new Array (fr.renderOrder.length);
-System.arraycopy (fr.renderOrder, 0, this.renderOrder, 0, fr.renderOrder.length);
-}if (fr.featureGroups != null) {
-this.featureGroups =  new java.util.concurrent.ConcurrentHashMap (fr.featureGroups);
-}if (fr.featureColours != null) {
-this.featureColours =  new java.util.concurrent.ConcurrentHashMap (fr.featureColours);
-}var en = fr.featureColours.keySet ().iterator ();
-while (en.hasNext ()) {
-var next = en.next ();
-var val = this.featureColours.get (next);
-if (Clazz.instanceOf (val, jalview.schemes.GraduatedColor)) {
-this.featureColours.put (next,  new jalview.schemes.GraduatedColor (val));
-}}
-this.transparency = fr.transparency;
-if (fr.featureOrder != null) {
-this.featureOrder =  new java.util.concurrent.ConcurrentHashMap (fr.featureOrder);
-}}, "jalview.viewmodel.seqfeatures.FeatureRendererModel");
-});
+Clazz.declarePackage ("jalview.viewmodel.seqfeatures");
+Clazz.load (null, "jalview.viewmodel.seqfeatures.FeatureRendererSettings", ["jalview.schemes.GraduatedColor", "java.util.Arrays", "java.util.concurrent.ConcurrentHashMap"], function () {
+c$ = Clazz.decorateAsClass (function () {
+this.renderOrder = null;
+this.featureGroups = null;
+this.featureColours = null;
+this.transparency = 0;
+this.featureOrder = null;
+Clazz.instantialize (this, arguments);
+}, jalview.viewmodel.seqfeatures, "FeatureRendererSettings", null, Cloneable);
+Clazz.makeConstructor (c$, 
+function (renderOrder, featureGroups, featureColours, transparency, featureOrder) {
+this.renderOrder = java.util.Arrays.copyOf (renderOrder, renderOrder.length);
+this.featureGroups =  new java.util.concurrent.ConcurrentHashMap (featureGroups);
+this.featureColours =  new java.util.concurrent.ConcurrentHashMap (featureColours);
+this.transparency = transparency;
+this.featureOrder =  new java.util.concurrent.ConcurrentHashMap (featureOrder);
+}, "~A,java.util.Hashtable,java.util.Hashtable,~N,java.util.Hashtable");
+Clazz.makeConstructor (c$, 
+function (fr) {
+this.renderOrder = null;
+this.featureGroups =  new java.util.concurrent.ConcurrentHashMap ();
+this.featureColours =  new java.util.concurrent.ConcurrentHashMap ();
+this.featureOrder =  new java.util.concurrent.ConcurrentHashMap ();
+if (fr.renderOrder != null) {
+this.renderOrder =  new Array (fr.renderOrder.length);
+System.arraycopy (fr.renderOrder, 0, this.renderOrder, 0, fr.renderOrder.length);
+}if (fr.featureGroups != null) {
+this.featureGroups =  new java.util.concurrent.ConcurrentHashMap (fr.featureGroups);
+}if (fr.featureColours != null) {
+this.featureColours =  new java.util.concurrent.ConcurrentHashMap (fr.featureColours);
+}var en = fr.featureColours.keySet ().iterator ();
+while (en.hasNext ()) {
+var next = en.next ();
+var val = this.featureColours.get (next);
+if (Clazz.instanceOf (val, jalview.schemes.GraduatedColor)) {
+this.featureColours.put (next,  new jalview.schemes.GraduatedColor (val));
+}}
+this.transparency = fr.transparency;
+if (fr.featureOrder != null) {
+this.featureOrder =  new java.util.concurrent.ConcurrentHashMap (fr.featureOrder);
+}}, "jalview.viewmodel.seqfeatures.FeatureRendererModel");
+});