X-Git-Url: http://source.jalview.org/gitweb/?p=jalviewjs.git;a=blobdiff_plain;f=src%2Fjalview%2Fschemes%2FAnnotationColourGradient.java;h=2198a4eebd4bad4105106772ca563ee0400bccac;hp=e65d5f52004166d90c2069160eaa94e5b1150d5f;hb=36d803e4a1f98728e91e80de5fa0b95e0cadb0d4;hpb=5b669b6c1a4f1f29b178283a46bc22fcd66aabad

diff --git a/src/jalview/schemes/AnnotationColourGradient.java b/src/jalview/schemes/AnnotationColourGradient.java
index e65d5f5..2198a4e 100644
--- a/src/jalview/schemes/AnnotationColourGradient.java
+++ b/src/jalview/schemes/AnnotationColourGradient.java
@@ -257,7 +257,7 @@ public class AnnotationColourGradient extends FollowerColourScheme
 	 * @return DOCUMENT ME!
 	 */
 	@Override
-	public Color findColour(char c, int j, SequenceI seq) {
+	public Color findColourSeq(char c, int j, SequenceI seq) {
 		Color currentColour = Color.white;
 		AlignmentAnnotation annotation = (seqAssociated && seqannot != null ? seqannot
 				.get(seq) : this.annotation);
@@ -289,7 +289,7 @@ public class AnnotationColourGradient extends FollowerColourScheme
 						if (aj.secondaryStructure > ' ' && aj.secondaryStructure != '.'
 								&& aj.secondaryStructure != '-') {
 							if (colourScheme != null) {
-								currentColour = colourScheme.findColour(c, j, seq);
+								currentColour = colourScheme.findColourSeq(c, j, seq);
 							} else {
 								if (annotation.isRNA()) {
 									currentColour = ColourSchemeProperty.rnaHelices[(int) aj.value];
@@ -305,7 +305,7 @@ public class AnnotationColourGradient extends FollowerColourScheme
 						}
 					} else if (noGradient) {
 						if (colourScheme != null) {
-							currentColour = colourScheme.findColour(c, j, seq);
+							currentColour = colourScheme.findColourSeq(c, j, seq);
 						} else {
 							if (aj.colour != null) {
 								currentColour = aj.colour;