source.jalview.org Git - jalviewjs.git/commit

git://source.jalview.org / jalviewjs.git / commit

author	hansonr <hansonr@stolaf.edu>
	Fri, 24 Jul 2015 09:27:35 +0000 (10:27 +0100)
committer	hansonr <hansonr@stolaf.edu>
	Fri, 24 Jul 2015 09:27:35 +0000 (10:27 +0100)
commit	7301a2415adab88038b291fc54caeeb3a5a47a44
tree	7325b62453417e5073e2280dd318ba431833063d	tree \| snapshot
parent	6154cb57a6eac3bb1344b8342495f5bb701ee921	commit \| diff

JAL-1807 includes ?j2sdebug flag and DebugJS._(msg)

712 files changed:

.j2s		diff \| blob \| history
bin/.gitignore	[new file with mode: 0644]	blob
bin/MCview/Atom.js		diff \| blob \| history
bin/MCview/Bond.js		diff \| blob \| history
bin/MCview/PDBChain.class		diff \| blob \| history
bin/MCview/PDBChain.js		diff \| blob \| history
bin/MCview/PDBfile.class		diff \| blob \| history
bin/MCview/PDBfile.js		diff \| blob \| history
bin/MCview/Residue.js		diff \| blob \| history
bin/awt2swing/Button.js		diff \| blob \| history
bin/awt2swing/Canvas.js		diff \| blob \| history
bin/awt2swing/Checkbox.js		diff \| blob \| history
bin/awt2swing/CheckboxMenuItem.js		diff \| blob \| history
bin/awt2swing/Choice.js		diff \| blob \| history
bin/awt2swing/Frame.js		diff \| blob \| history
bin/awt2swing/Label.js		diff \| blob \| history
bin/awt2swing/Menu.js		diff \| blob \| history
bin/awt2swing/MenuBar.js		diff \| blob \| history
bin/awt2swing/MenuItem.js		diff \| blob \| history
bin/awt2swing/Panel.js		diff \| blob \| history
bin/awt2swing/PopupMenu.js		diff \| blob \| history
bin/awt2swing/ScrollPane.js		diff \| blob \| history
bin/awt2swing/Scrollbar.js		diff \| blob \| history
bin/awt2swing/TextArea.js		diff \| blob \| history
bin/awt2swing/TextField.js		diff \| blob \| history
bin/com/stevesoft/pat/AmpersandRule.js		diff \| blob \| history
bin/com/stevesoft/pat/Any.js		diff \| blob \| history
bin/com/stevesoft/pat/BackG.js		diff \| blob \| history
bin/com/stevesoft/pat/BackMatch.js		diff \| blob \| history
bin/com/stevesoft/pat/BackRefRule.js		diff \| blob \| history
bin/com/stevesoft/pat/Backup.js		diff \| blob \| history
bin/com/stevesoft/pat/BasicStringBufferLike.js		diff \| blob \| history
bin/com/stevesoft/pat/Bits.js		diff \| blob \| history
bin/com/stevesoft/pat/Boundary.js		diff \| blob \| history
bin/com/stevesoft/pat/Bracket.js		diff \| blob \| history
bin/com/stevesoft/pat/CaseMgr.js		diff \| blob \| history
bin/com/stevesoft/pat/ChangeRule.js		diff \| blob \| history
bin/com/stevesoft/pat/CodeRule.js		diff \| blob \| history
bin/com/stevesoft/pat/Ctrl.js		diff \| blob \| history
bin/com/stevesoft/pat/Custom.js		diff \| blob \| history
bin/com/stevesoft/pat/CustomEndpoint.js		diff \| blob \| history
bin/com/stevesoft/pat/DirFileRegex.js		diff \| blob \| history
bin/com/stevesoft/pat/DotMulti.class		diff \| blob \| history
bin/com/stevesoft/pat/DotMulti.js		diff \| blob \| history
bin/com/stevesoft/pat/End.js		diff \| blob \| history
bin/com/stevesoft/pat/FastBracket.js		diff \| blob \| history
bin/com/stevesoft/pat/FastMulti.class		diff \| blob \| history
bin/com/stevesoft/pat/FastMulti.js		diff \| blob \| history
bin/com/stevesoft/pat/FileRegex.js		diff \| blob \| history
bin/com/stevesoft/pat/Group.js		diff \| blob \| history
bin/com/stevesoft/pat/LeftRule.js		diff \| blob \| history
bin/com/stevesoft/pat/MessageManager.js		diff \| blob \| history
bin/com/stevesoft/pat/Multi.js		diff \| blob \| history
bin/com/stevesoft/pat/MultiMin.js		diff \| blob \| history
bin/com/stevesoft/pat/Multi_stage2.js		diff \| blob \| history
bin/com/stevesoft/pat/NoPattern.js		diff \| blob \| history
bin/com/stevesoft/pat/NonDirFileRegex.js		diff \| blob \| history
bin/com/stevesoft/pat/NotImplementedError.js		diff \| blob \| history
bin/com/stevesoft/pat/NullPattern.js		diff \| blob \| history
bin/com/stevesoft/pat/NullRule.js		diff \| blob \| history
bin/com/stevesoft/pat/Or.js		diff \| blob \| history
bin/com/stevesoft/pat/OrMark.js		diff \| blob \| history
bin/com/stevesoft/pat/PartialBuffer.js		diff \| blob \| history
bin/com/stevesoft/pat/Pattern.js		diff \| blob \| history
bin/com/stevesoft/pat/PatternSub.js		diff \| blob \| history
bin/com/stevesoft/pat/PopRule.js		diff \| blob \| history
bin/com/stevesoft/pat/Prop.js		diff \| blob \| history
bin/com/stevesoft/pat/Pthings.js		diff \| blob \| history
bin/com/stevesoft/pat/PushRule.js		diff \| blob \| history
bin/com/stevesoft/pat/RBuffer.js		diff \| blob \| history
bin/com/stevesoft/pat/Range.js		diff \| blob \| history
bin/com/stevesoft/pat/RegOpt.class		diff \| blob \| history
bin/com/stevesoft/pat/RegOpt.js		diff \| blob \| history
bin/com/stevesoft/pat/RegRes.js		diff \| blob \| history
bin/com/stevesoft/pat/RegSyntax.js		diff \| blob \| history
bin/com/stevesoft/pat/RegSyntaxError.js		diff \| blob \| history
bin/com/stevesoft/pat/Regex.class		diff \| blob \| history
bin/com/stevesoft/pat/Regex.js		diff \| blob \| history
bin/com/stevesoft/pat/RegexReader.class		diff \| blob \| history
bin/com/stevesoft/pat/RegexReader.js		diff \| blob \| history
bin/com/stevesoft/pat/RegexTokenizer.js		diff \| blob \| history
bin/com/stevesoft/pat/RegexWriter.class		diff \| blob \| history
bin/com/stevesoft/pat/RegexWriter.js		diff \| blob \| history
bin/com/stevesoft/pat/ReplaceRule.class		diff \| blob \| history
bin/com/stevesoft/pat/ReplaceRule.js		diff \| blob \| history
bin/com/stevesoft/pat/Replacer.class		diff \| blob \| history
bin/com/stevesoft/pat/Replacer.js		diff \| blob \| history
bin/com/stevesoft/pat/RightRule.js		diff \| blob \| history
bin/com/stevesoft/pat/Rthings.js		diff \| blob \| history
bin/com/stevesoft/pat/RuleHolder.js		diff \| blob \| history
bin/com/stevesoft/pat/Skip.js		diff \| blob \| history
bin/com/stevesoft/pat/Skip2.js		diff \| blob \| history
bin/com/stevesoft/pat/SkipBMH.js		diff \| blob \| history
bin/com/stevesoft/pat/Skipped.js		diff \| blob \| history
bin/com/stevesoft/pat/SpecialRule.js		diff \| blob \| history
bin/com/stevesoft/pat/Start.js		diff \| blob \| history
bin/com/stevesoft/pat/StrPos.class		diff \| blob \| history
bin/com/stevesoft/pat/StrPos.js		diff \| blob \| history
bin/com/stevesoft/pat/StringBufferLike.class		diff \| blob \| history
bin/com/stevesoft/pat/StringBufferLike.js		diff \| blob \| history
bin/com/stevesoft/pat/StringLike.js		diff \| blob \| history
bin/com/stevesoft/pat/StringRule.js		diff \| blob \| history
bin/com/stevesoft/pat/SubMark.js		diff \| blob \| history
bin/com/stevesoft/pat/TransPat.js		diff \| blob \| history
bin/com/stevesoft/pat/Transformer.js		diff \| blob \| history
bin/com/stevesoft/pat/UniValidator.js		diff \| blob \| history
bin/com/stevesoft/pat/Util.js		diff \| blob \| history
bin/com/stevesoft/pat/Validator.js		diff \| blob \| history
bin/com/stevesoft/pat/WantMoreTextReplaceRule.js		diff \| blob \| history
bin/com/stevesoft/pat/lookAhead.js		diff \| blob \| history
bin/com/stevesoft/pat/oneChar.js		diff \| blob \| history
bin/com/stevesoft/pat/package.js		diff \| blob \| history
bin/com/stevesoft/pat/parsePerl.class		diff \| blob \| history
bin/com/stevesoft/pat/parsePerl.js		diff \| blob \| history
bin/com/stevesoft/pat/patInf.js		diff \| blob \| history
bin/com/stevesoft/pat/patInt.js		diff \| blob \| history
bin/com/stevesoft/pat/wrap/CharArrayBufferWrap.js		diff \| blob \| history
bin/com/stevesoft/pat/wrap/CharArrayWrap.js		diff \| blob \| history
bin/com/stevesoft/pat/wrap/RandomAccessFileWrap.js		diff \| blob \| history
bin/com/stevesoft/pat/wrap/StringBufferWrap.js		diff \| blob \| history
bin/com/stevesoft/pat/wrap/StringWrap.js		diff \| blob \| history
bin/com/stevesoft/pat/wrap/WriterWrap.js		diff \| blob \| history
bin/fr/orsay/lri/varna/models/rna/RNA.js		diff \| blob \| history
bin/jalview/analysis/AAFrequency.class		diff \| blob \| history
bin/jalview/analysis/AAFrequency.js		diff \| blob \| history
bin/jalview/analysis/AlignSeq.class		diff \| blob \| history
bin/jalview/analysis/AlignSeq.js		diff \| blob \| history
bin/jalview/analysis/AlignmentAnnotationUtils.class		diff \| blob \| history
bin/jalview/analysis/AlignmentAnnotationUtils.js		diff \| blob \| history
bin/jalview/analysis/AlignmentSorter.class		diff \| blob \| history
bin/jalview/analysis/AlignmentSorter.js		diff \| blob \| history
bin/jalview/analysis/AlignmentUtils.class		diff \| blob \| history
bin/jalview/analysis/AlignmentUtils.js		diff \| blob \| history
bin/jalview/analysis/AnnotationSorter.js		diff \| blob \| history
bin/jalview/analysis/CodingUtils.js		diff \| blob \| history
bin/jalview/analysis/CodonComparator.js		diff \| blob \| history
bin/jalview/analysis/Conservation.class		diff \| blob \| history
bin/jalview/analysis/Conservation.js		diff \| blob \| history
bin/jalview/analysis/Dna.class		diff \| blob \| history
bin/jalview/analysis/Dna.js		diff \| blob \| history
bin/jalview/analysis/Finder.class		diff \| blob \| history
bin/jalview/analysis/Finder.js		diff \| blob \| history
bin/jalview/analysis/Grouping.js		diff \| blob \| history
bin/jalview/analysis/NJTree.class		diff \| blob \| history
bin/jalview/analysis/NJTree.js		diff \| blob \| history
bin/jalview/analysis/PCA.js		diff \| blob \| history
bin/jalview/analysis/ParseProperties.js		diff \| blob \| history
bin/jalview/analysis/Rna.js		diff \| blob \| history
bin/jalview/analysis/SecStrConsensus.class		diff \| blob \| history
bin/jalview/analysis/SecStrConsensus.js		diff \| blob \| history
bin/jalview/analysis/SeqsetUtils.js		diff \| blob \| history
bin/jalview/analysis/SequenceIdMatcher$SeqIdName.class		diff \| blob \| history
bin/jalview/analysis/SequenceIdMatcher.js		diff \| blob \| history
bin/jalview/analysis/StructureFrequency.class		diff \| blob \| history
bin/jalview/analysis/StructureFrequency.js		diff \| blob \| history
bin/jalview/analysis/WUSSParseException.js		diff \| blob \| history
bin/jalview/analysis/package.js		diff \| blob \| history
bin/jalview/analysis/scoremodels/FeatureScoreModel.js		diff \| blob \| history
bin/jalview/analysis/scoremodels/PIDScoreModel.js		diff \| blob \| history
bin/jalview/analysis/scoremodels/PairwiseSeqScoreModel.js		diff \| blob \| history
bin/jalview/analysis/scoremodels/SWScoreModel.js		diff \| blob \| history
bin/jalview/api/AlignCalcManagerI.js		diff \| blob \| history
bin/jalview/api/AlignCalcWorkerI.js		diff \| blob \| history
bin/jalview/api/AlignExportSettingI.js		diff \| blob \| history
bin/jalview/api/AlignViewControllerGuiI.js		diff \| blob \| history
bin/jalview/api/AlignViewControllerI.js		diff \| blob \| history
bin/jalview/api/AlignViewportI.js		diff \| blob \| history
bin/jalview/api/AlignmentViewPanel.js		diff \| blob \| history
bin/jalview/api/ComplexAlignFile.js		diff \| blob \| history
bin/jalview/api/FeatureRenderer.js		diff \| blob \| history
bin/jalview/api/FeatureSettingsControllerI.js		diff \| blob \| history
bin/jalview/api/FeatureSettingsModelI.js		diff \| blob \| history
bin/jalview/api/FeaturesDisplayedI.js		diff \| blob \| history
bin/jalview/api/OOMHandlerI.js		diff \| blob \| history
bin/jalview/api/RotatableCanvasI.js		diff \| blob \| history
bin/jalview/api/SequenceRenderer.js		diff \| blob \| history
bin/jalview/api/SequenceStructureBinding.js		diff \| blob \| history
bin/jalview/api/SplitContainerI.js		diff \| blob \| history
bin/jalview/api/StructureSelectionManagerProvider.js		diff \| blob \| history
bin/jalview/api/ViewStyleI.js		diff \| blob \| history
bin/jalview/api/analysis/ScoreModelI.js		diff \| blob \| history
bin/jalview/api/analysis/ViewBasedAnalysisI.js		diff \| blob \| history
bin/jalview/api/structures/JalviewStructureDisplayI.js		diff \| blob \| history
bin/jalview/appletgui/APopupMenu.class		diff \| blob \| history
bin/jalview/appletgui/APopupMenu.js		diff \| blob \| history
bin/jalview/appletgui/AlignFrame.class		diff \| blob \| history
bin/jalview/appletgui/AlignFrame.js		diff \| blob \| history
bin/jalview/appletgui/AlignViewport.js		diff \| blob \| history
bin/jalview/appletgui/AlignmentPanel.class		diff \| blob \| history
bin/jalview/appletgui/AlignmentPanel.js		diff \| blob \| history
bin/jalview/appletgui/AnnotationColourChooser.class		diff \| blob \| history
bin/jalview/appletgui/AnnotationColourChooser.js		diff \| blob \| history
bin/jalview/appletgui/AnnotationColumnChooser.class		diff \| blob \| history
bin/jalview/appletgui/AnnotationColumnChooser.js		diff \| blob \| history
bin/jalview/appletgui/AnnotationLabels.class		diff \| blob \| history
bin/jalview/appletgui/AnnotationLabels.js		diff \| blob \| history
bin/jalview/appletgui/AnnotationPanel.class		diff \| blob \| history
bin/jalview/appletgui/AnnotationPanel.js		diff \| blob \| history
bin/jalview/appletgui/AnnotationRowFilter.js		diff \| blob \| history
bin/jalview/appletgui/AppletJmol.js		diff \| blob \| history
bin/jalview/appletgui/AppletJmolBinding.js		diff \| blob \| history
bin/jalview/appletgui/CutAndPasteTransfer.class		diff \| blob \| history
bin/jalview/appletgui/CutAndPasteTransfer.js		diff \| blob \| history
bin/jalview/appletgui/EditNameDialog.js		diff \| blob \| history
bin/jalview/appletgui/EmbmenuFrame.js		diff \| blob \| history
bin/jalview/appletgui/ExtJmol.js		diff \| blob \| history
bin/jalview/appletgui/FeatureColourChooser.class		diff \| blob \| history
bin/jalview/appletgui/FeatureColourChooser.js		diff \| blob \| history
bin/jalview/appletgui/FeatureRenderer.class		diff \| blob \| history
bin/jalview/appletgui/FeatureRenderer.js		diff \| blob \| history
bin/jalview/appletgui/FeatureSettings.js		diff \| blob \| history
bin/jalview/appletgui/Finder.js		diff \| blob \| history
bin/jalview/appletgui/FontChooser.js		diff \| blob \| history
bin/jalview/appletgui/IdCanvas.class		diff \| blob \| history
bin/jalview/appletgui/IdCanvas.js		diff \| blob \| history
bin/jalview/appletgui/IdPanel.js		diff \| blob \| history
bin/jalview/appletgui/IdwidthAdjuster.js		diff \| blob \| history
bin/jalview/appletgui/JVDialog.js		diff \| blob \| history
bin/jalview/appletgui/OverviewPanel.class		diff \| blob \| history
bin/jalview/appletgui/OverviewPanel.js		diff \| blob \| history
bin/jalview/appletgui/PCAPanel.class		diff \| blob \| history
bin/jalview/appletgui/PCAPanel.js		diff \| blob \| history
bin/jalview/appletgui/PaintRefresher.class		diff \| blob \| history
bin/jalview/appletgui/PaintRefresher.js		diff \| blob \| history
bin/jalview/appletgui/PairwiseAlignPanel.class		diff \| blob \| history
bin/jalview/appletgui/PairwiseAlignPanel.js		diff \| blob \| history
bin/jalview/appletgui/RedundancyPanel.js		diff \| blob \| history
bin/jalview/appletgui/RotatableCanvas.js		diff \| blob \| history
bin/jalview/appletgui/ScalePanel.class		diff \| blob \| history
bin/jalview/appletgui/ScalePanel.js		diff \| blob \| history
bin/jalview/appletgui/SeqCanvas.class		diff \| blob \| history
bin/jalview/appletgui/SeqCanvas.js		diff \| blob \| history
bin/jalview/appletgui/SeqPanel.class		diff \| blob \| history
bin/jalview/appletgui/SeqPanel.js		diff \| blob \| history
bin/jalview/appletgui/SequenceRenderer.class		diff \| blob \| history
bin/jalview/appletgui/SequenceRenderer.js		diff \| blob \| history
bin/jalview/appletgui/SliderPanel.class		diff \| blob \| history
bin/jalview/appletgui/SliderPanel.js		diff \| blob \| history
bin/jalview/appletgui/SplitFrame.js		diff \| blob \| history
bin/jalview/appletgui/TitledPanel.js		diff \| blob \| history
bin/jalview/appletgui/Tooltip.js		diff \| blob \| history
bin/jalview/appletgui/TreeCanvas.class		diff \| blob \| history
bin/jalview/appletgui/TreeCanvas.js		diff \| blob \| history
bin/jalview/appletgui/TreePanel$TreeLoader.class		diff \| blob \| history
bin/jalview/appletgui/TreePanel.class		diff \| blob \| history
bin/jalview/appletgui/TreePanel.js		diff \| blob \| history
bin/jalview/appletgui/UserDefinedColours.class		diff \| blob \| history
bin/jalview/appletgui/UserDefinedColours.js		diff \| blob \| history
bin/jalview/bin/Cache.js		diff \| blob \| history
bin/jalview/bin/JalviewLite$4.class		diff \| blob \| history
bin/jalview/bin/JalviewLite$LoadJmolThread.class		diff \| blob \| history
bin/jalview/bin/JalviewLite$LoadingThread.class		diff \| blob \| history
bin/jalview/bin/JalviewLite.class		diff \| blob \| history
bin/jalview/bin/JalviewLite.js		diff \| blob \| history
bin/jalview/commands/ChangeCaseCommand.js		diff \| blob \| history
bin/jalview/commands/CommandI.js		diff \| blob \| history
bin/jalview/commands/EditCommand.class		diff \| blob \| history
bin/jalview/commands/EditCommand.js		diff \| blob \| history
bin/jalview/commands/OrderCommand.js		diff \| blob \| history
bin/jalview/commands/RemoveGapColCommand.js		diff \| blob \| history
bin/jalview/commands/RemoveGapsCommand.js		diff \| blob \| history
bin/jalview/commands/SlideSequencesCommand.js		diff \| blob \| history
bin/jalview/commands/TrimRegionCommand.class		diff \| blob \| history
bin/jalview/commands/TrimRegionCommand.js		diff \| blob \| history
bin/jalview/controller/AlignViewController.class		diff \| blob \| history
bin/jalview/controller/AlignViewController.js		diff \| blob \| history
bin/jalview/controller/FeatureSettingsController.js		diff \| blob \| history
bin/jalview/controller/FeatureSettingsControllerGuiI.js		diff \| blob \| history
bin/jalview/datamodel/ASequence.js		diff \| blob \| history
bin/jalview/datamodel/ASequenceI.js		diff \| blob \| history
bin/jalview/datamodel/AlignedCodon.js		diff \| blob \| history
bin/jalview/datamodel/AlignedCodonFrame.class		diff \| blob \| history
bin/jalview/datamodel/AlignedCodonFrame.js		diff \| blob \| history
bin/jalview/datamodel/Alignment.class		diff \| blob \| history
bin/jalview/datamodel/Alignment.js		diff \| blob \| history
bin/jalview/datamodel/AlignmentAnnotation.class		diff \| blob \| history
bin/jalview/datamodel/AlignmentAnnotation.js		diff \| blob \| history
bin/jalview/datamodel/AlignmentI.js		diff \| blob \| history
bin/jalview/datamodel/AlignmentOrder.js		diff \| blob \| history
bin/jalview/datamodel/AlignmentView.class		diff \| blob \| history
bin/jalview/datamodel/AlignmentView.js		diff \| blob \| history
bin/jalview/datamodel/AnnotatedCollectionI.js		diff \| blob \| history
bin/jalview/datamodel/Annotation.class		diff \| blob \| history
bin/jalview/datamodel/Annotation.js		diff \| blob \| history
bin/jalview/datamodel/BinaryNode.js		diff \| blob \| history
bin/jalview/datamodel/BinarySequence.js		diff \| blob \| history
bin/jalview/datamodel/CigarArray.class		diff \| blob \| history
bin/jalview/datamodel/CigarArray.js		diff \| blob \| history
bin/jalview/datamodel/CigarBase.class		diff \| blob \| history
bin/jalview/datamodel/CigarBase.js		diff \| blob \| history
bin/jalview/datamodel/CigarCigar.js		diff \| blob \| history
bin/jalview/datamodel/CigarSimple.js		diff \| blob \| history
bin/jalview/datamodel/ColumnSelection.class		diff \| blob \| history
bin/jalview/datamodel/ColumnSelection.js		diff \| blob \| history
bin/jalview/datamodel/DBRefEntry.js		diff \| blob \| history
bin/jalview/datamodel/DBRefSource.js		diff \| blob \| history
bin/jalview/datamodel/FeatureProperties.js		diff \| blob \| history
bin/jalview/datamodel/GraphLine.js		diff \| blob \| history
bin/jalview/datamodel/HiddenSequences.class		diff \| blob \| history
bin/jalview/datamodel/HiddenSequences.js		diff \| blob \| history
bin/jalview/datamodel/IncompleteCodonException.js		diff \| blob \| history
bin/jalview/datamodel/Mapping.js		diff \| blob \| history
bin/jalview/datamodel/NodeTransformI.js		diff \| blob \| history
bin/jalview/datamodel/PDBEntry.js		diff \| blob \| history
bin/jalview/datamodel/Provenance.js		diff \| blob \| history
bin/jalview/datamodel/ProvenanceEntry.js		diff \| blob \| history
bin/jalview/datamodel/RnaViewerModel.js		diff \| blob \| history
bin/jalview/datamodel/SearchResults.js		diff \| blob \| history
bin/jalview/datamodel/SecondaryStructureAnnotation.js		diff \| blob \| history
bin/jalview/datamodel/SeqCigar.class		diff \| blob \| history
bin/jalview/datamodel/SeqCigar.js		diff \| blob \| history
bin/jalview/datamodel/Sequence.class		diff \| blob \| history
bin/jalview/datamodel/Sequence.js		diff \| blob \| history
bin/jalview/datamodel/SequenceCollectionI.js		diff \| blob \| history
bin/jalview/datamodel/SequenceDummy.js		diff \| blob \| history
bin/jalview/datamodel/SequenceFeature.js		diff \| blob \| history
bin/jalview/datamodel/SequenceGroup.class		diff \| blob \| history
bin/jalview/datamodel/SequenceGroup.js		diff \| blob \| history
bin/jalview/datamodel/SequenceI.js		diff \| blob \| history
bin/jalview/datamodel/SequenceNode.js		diff \| blob \| history
bin/jalview/datamodel/SequencePoint.js		diff \| blob \| history
bin/jalview/datamodel/StructureViewerModel.js		diff \| blob \| history
bin/jalview/datamodel/UniprotEntry.js		diff \| blob \| history
bin/jalview/datamodel/UniprotFile.js		diff \| blob \| history
bin/jalview/datamodel/UniprotProteinName.js		diff \| blob \| history
bin/jalview/datamodel/UniprotSequence.js		diff \| blob \| history
bin/jalview/ext/jmol/JmolCommands.class		diff \| blob \| history
bin/jalview/ext/jmol/JmolCommands.js		diff \| blob \| history
bin/jalview/ext/varna/JalviewVarnaBinding.js		diff \| blob \| history
bin/jalview/ext/varna/RnaModel.js		diff \| blob \| history
bin/jalview/ext/varna/VarnaCommands.class		diff \| blob \| history
bin/jalview/ext/varna/VarnaCommands.js		diff \| blob \| history
bin/jalview/io/AlignFile.js		diff \| blob \| history
bin/jalview/io/AlignmentProperties.js		diff \| blob \| history
bin/jalview/io/AnnotationFile.class		diff \| blob \| history
bin/jalview/io/AnnotationFile.js		diff \| blob \| history
bin/jalview/io/AppletFormatAdapter.class		diff \| blob \| history
bin/jalview/io/AppletFormatAdapter.js		diff \| blob \| history
bin/jalview/io/FastaFile.class		diff \| blob \| history
bin/jalview/io/FastaFile.js		diff \| blob \| history
bin/jalview/io/FeaturesFile.class		diff \| blob \| history
bin/jalview/io/FeaturesFile.js		diff \| blob \| history
bin/jalview/io/FileParse.class		diff \| blob \| history
bin/jalview/io/FileParse.js		diff \| blob \| history
bin/jalview/io/IdentifyFile.class		diff \| blob \| history
bin/jalview/io/IdentifyFile.js		diff \| blob \| history
bin/jalview/io/JPredFile.class		diff \| blob \| history
bin/jalview/io/JPredFile.js		diff \| blob \| history
bin/jalview/io/JnetAnnotationMaker.class		diff \| blob \| history
bin/jalview/io/JnetAnnotationMaker.js		diff \| blob \| history
bin/jalview/io/MSFfile.class		diff \| blob \| history
bin/jalview/io/MSFfile.js		diff \| blob \| history
bin/jalview/io/ModellerDescription.class		diff \| blob \| history
bin/jalview/io/ModellerDescription.js		diff \| blob \| history
bin/jalview/io/NewickFile.class		diff \| blob \| history
bin/jalview/io/NewickFile.js		diff \| blob \| history
bin/jalview/io/PIRFile.class		diff \| blob \| history
bin/jalview/io/PIRFile.js		diff \| blob \| history
bin/jalview/io/PfamFile.js		diff \| blob \| history
bin/jalview/io/PhylipFile.js		diff \| blob \| history
bin/jalview/io/PileUpfile.class		diff \| blob \| history
bin/jalview/io/PileUpfile.js		diff \| blob \| history
bin/jalview/io/SequenceAnnotationReport.class		diff \| blob \| history
bin/jalview/io/SequenceAnnotationReport.js		diff \| blob \| history
bin/jalview/io/TCoffeeScoreFile.class		diff \| blob \| history
bin/jalview/io/TCoffeeScoreFile.js		diff \| blob \| history
bin/jalview/javascript/JSFunctionExec$1.class		diff \| blob \| history
bin/jalview/javascript/JSFunctionExec.class		diff \| blob \| history
bin/jalview/javascript/JSFunctionExec.js		diff \| blob \| history
bin/jalview/javascript/JalviewLiteJsApi.js		diff \| blob \| history
bin/jalview/javascript/JsCallBack.js		diff \| blob \| history
bin/jalview/javascript/JsSelectionSender.js		diff \| blob \| history
bin/jalview/javascript/MouseOverListener.js		diff \| blob \| history
bin/jalview/javascript/MouseOverStructureListener.js		diff \| blob \| history
bin/jalview/jsdev/Constants.js		diff \| blob \| history
bin/jalview/jsdev/GenericFileAdapter.js		diff \| blob \| history
bin/jalview/jsdev/JSRegex.js		diff \| blob \| history
bin/jalview/jsdev/JavaScriptRegExp.js		diff \| blob \| history
bin/jalview/jsdev/RegExp.js		diff \| blob \| history
bin/jalview/jsdev/api/RegExpInterface.js		diff \| blob \| history
bin/jalview/jsdev/api/VarnaRNA.js		diff \| blob \| history
bin/jalview/math/AlignmentDimension.js		diff \| blob \| history
bin/jalview/math/Matrix.class		diff \| blob \| history
bin/jalview/math/Matrix.js		diff \| blob \| history
bin/jalview/math/RotatableMatrix.js		diff \| blob \| history
bin/jalview/renderer/AnnotationRenderer.class		diff \| blob \| history
bin/jalview/renderer/AnnotationRenderer.js		diff \| blob \| history
bin/jalview/renderer/AwtRenderPanelI.js		diff \| blob \| history
bin/jalview/renderer/seqfeatures/FeatureRenderer.class		diff \| blob \| history
bin/jalview/renderer/seqfeatures/FeatureRenderer.js		diff \| blob \| history
bin/jalview/schemes/AnnotationColourGradient.class		diff \| blob \| history
bin/jalview/schemes/AnnotationColourGradient.js		diff \| blob \| history
bin/jalview/schemes/Blosum62ColourScheme.class		diff \| blob \| history
bin/jalview/schemes/Blosum62ColourScheme.js		diff \| blob \| history
bin/jalview/schemes/BuriedColourScheme.js		diff \| blob \| history
bin/jalview/schemes/ClustalxColourScheme.js		diff \| blob \| history
bin/jalview/schemes/ColourSchemeI.js		diff \| blob \| history
bin/jalview/schemes/ColourSchemeProperty.js		diff \| blob \| history
bin/jalview/schemes/Consensus.js		diff \| blob \| history
bin/jalview/schemes/CovariationColourScheme.js		diff \| blob \| history
bin/jalview/schemes/FollowerColourScheme.js		diff \| blob \| history
bin/jalview/schemes/GraduatedColor.js		diff \| blob \| history
bin/jalview/schemes/HelixColourScheme.js		diff \| blob \| history
bin/jalview/schemes/HydrophobicColourScheme.js		diff \| blob \| history
bin/jalview/schemes/NucleotideColourScheme.js		diff \| blob \| history
bin/jalview/schemes/PIDColourScheme.js		diff \| blob \| history
bin/jalview/schemes/PurinePyrimidineColourScheme.js		diff \| blob \| history
bin/jalview/schemes/RNAHelicesColour.js		diff \| blob \| history
bin/jalview/schemes/RNAHelicesColourChooser.js		diff \| blob \| history
bin/jalview/schemes/RNAInteractionColourScheme.js		diff \| blob \| history
bin/jalview/schemes/ResidueColourScheme.js		diff \| blob \| history
bin/jalview/schemes/ResidueProperties.class		diff \| blob \| history
bin/jalview/schemes/ResidueProperties.js		diff \| blob \| history
bin/jalview/schemes/ScoreColourScheme.js		diff \| blob \| history
bin/jalview/schemes/ScoreMatrix.js		diff \| blob \| history
bin/jalview/schemes/StrandColourScheme.js		diff \| blob \| history
bin/jalview/schemes/TCoffeeColourScheme.js		diff \| blob \| history
bin/jalview/schemes/TaylorColourScheme.js		diff \| blob \| history
bin/jalview/schemes/TurnColourScheme.js		diff \| blob \| history
bin/jalview/schemes/UserColourScheme.class		diff \| blob \| history
bin/jalview/schemes/UserColourScheme.js		diff \| blob \| history
bin/jalview/schemes/ZappoColourScheme.js		diff \| blob \| history
bin/jalview/schemes/package.js		diff \| blob \| history
bin/jalview/structure/AlignmentViewPanelListener.js		diff \| blob \| history
bin/jalview/structure/AtomSpec.js		diff \| blob \| history
bin/jalview/structure/CommandListener.js		diff \| blob \| history
bin/jalview/structure/SecondaryStructureListener.js		diff \| blob \| history
bin/jalview/structure/SelectionListener.js		diff \| blob \| history
bin/jalview/structure/SelectionSource.js		diff \| blob \| history
bin/jalview/structure/SequenceListener.js		diff \| blob \| history
bin/jalview/structure/StructureListener.js		diff \| blob \| history
bin/jalview/structure/StructureMapping.js		diff \| blob \| history
bin/jalview/structure/StructureMappingcommandSet.js		diff \| blob \| history
bin/jalview/structure/StructureSelectionManager.class		diff \| blob \| history
bin/jalview/structure/StructureSelectionManager.js		diff \| blob \| history
bin/jalview/structure/VamsasListener.js		diff \| blob \| history
bin/jalview/structure/VamsasSource.js		diff \| blob \| history
bin/jalview/structures/models/AAStructureBindingModel.class		diff \| blob \| history
bin/jalview/structures/models/AAStructureBindingModel.js		diff \| blob \| history
bin/jalview/structures/models/SequenceStructureBindingModel.js		diff \| blob \| history
bin/jalview/util/AWTConsole.js	[deleted file]	blob \| history
bin/jalview/util/BrowserLauncher.js	[deleted file]	blob \| history
bin/jalview/util/ColorUtils.js		diff \| blob \| history
bin/jalview/util/Comparison.class		diff \| blob \| history
bin/jalview/util/Comparison.js		diff \| blob \| history
bin/jalview/util/DBRefUtils.class		diff \| blob \| history
bin/jalview/util/DBRefUtils.js		diff \| blob \| history
bin/jalview/util/Format.class		diff \| blob \| history
bin/jalview/util/Format.js		diff \| blob \| history
bin/jalview/util/GroupUrlLink.class		diff \| blob \| history
bin/jalview/util/GroupUrlLink.js		diff \| blob \| history
bin/jalview/util/MapList.class		diff \| blob \| history
bin/jalview/util/MapList.js		diff \| blob \| history
bin/jalview/util/MappingUtils.js		diff \| blob \| history
bin/jalview/util/MessageManager.class		diff \| blob \| history
bin/jalview/util/MessageManager.js		diff \| blob \| history
bin/jalview/util/ParseHtmlBodyAndLinks.class		diff \| blob \| history
bin/jalview/util/ParseHtmlBodyAndLinks.js		diff \| blob \| history
bin/jalview/util/Platform.js		diff \| blob \| history
bin/jalview/util/QuickSort.js		diff \| blob \| history
bin/jalview/util/ReverseListIterator.js		diff \| blob \| history
bin/jalview/util/ShiftList.js		diff \| blob \| history
bin/jalview/util/StringUtils.js		diff \| blob \| history
bin/jalview/util/TableSorter.js		diff \| blob \| history
bin/jalview/util/UrlLink.class		diff \| blob \| history
bin/jalview/util/UrlLink.js		diff \| blob \| history
bin/jalview/util/jarInputStreamProvider.js	[deleted file]	blob \| history
bin/jalview/viewmodel/AlignmentViewport.js		diff \| blob \| history
bin/jalview/viewmodel/PCAModel.class		diff \| blob \| history
bin/jalview/viewmodel/PCAModel.js		diff \| blob \| history
bin/jalview/viewmodel/annotationfilter/AnnotationFilterParameter.js		diff \| blob \| history
bin/jalview/viewmodel/seqfeatures/FeatureRendererModel.class		diff \| blob \| history
bin/jalview/viewmodel/seqfeatures/FeatureRendererModel.js		diff \| blob \| history
bin/jalview/viewmodel/seqfeatures/FeatureRendererSettings.js		diff \| blob \| history
bin/jalview/viewmodel/seqfeatures/FeatureSettingsModel.js		diff \| blob \| history
bin/jalview/viewmodel/seqfeatures/FeaturesDisplayed.js		diff \| blob \| history
bin/jalview/viewmodel/styles/ViewStyle.js		diff \| blob \| history
bin/jalview/workers/AlignCalcManager.js		diff \| blob \| history
bin/jalview/workers/AlignCalcWorker.js		diff \| blob \| history
bin/jalview/workers/ComplementConsensusThread.js		diff \| blob \| history
bin/jalview/workers/ConsensusThread.js		diff \| blob \| history
bin/jalview/workers/ConservationThread.js		diff \| blob \| history
bin/jalview/workers/StrucConsensusThread.class		diff \| blob \| history
bin/jalview/workers/StrucConsensusThread.js		diff \| blob \| history
bin/java.policy.applet	[deleted file]	blob \| history
bin/javajs/J2SIgnoreImport.js		diff \| blob \| history
bin/javajs/J2SRequireImport.js		diff \| blob \| history
bin/javajs/api/BytePoster.js		diff \| blob \| history
bin/javajs/api/EigenInterface.js		diff \| blob \| history
bin/javajs/api/EventManager.js		diff \| blob \| history
bin/javajs/api/FontManager.js		diff \| blob \| history
bin/javajs/api/GenericBinaryDocument.js		diff \| blob \| history
bin/javajs/api/GenericCifDataParser.js		diff \| blob \| history
bin/javajs/api/GenericColor.js		diff \| blob \| history
bin/javajs/api/GenericFileInterface.js		diff \| blob \| history
bin/javajs/api/GenericImageDialog.js		diff \| blob \| history
bin/javajs/api/GenericImageEncoder.js		diff \| blob \| history
bin/javajs/api/GenericLineReader.js		diff \| blob \| history
bin/javajs/api/GenericMenuInterface.js		diff \| blob \| history
bin/javajs/api/GenericMouseInterface.js		diff \| blob \| history
bin/javajs/api/GenericPlatform.js		diff \| blob \| history
bin/javajs/api/GenericZipInputStream.js		diff \| blob \| history
bin/javajs/api/GenericZipTools.js		diff \| blob \| history
bin/javajs/api/HTMLElement.js		diff \| blob \| history
bin/javajs/api/HTMLWindowEvent.js		diff \| blob \| history
bin/javajs/api/Interface.js		diff \| blob \| history
bin/javajs/api/JSInterface.js		diff \| blob \| history
bin/javajs/api/JSONEncodable.js		diff \| blob \| history
bin/javajs/api/JmolObjectInterface.js		diff \| blob \| history
bin/javajs/api/PlatformViewer.js		diff \| blob \| history
bin/javajs/api/SC.js		diff \| blob \| history
bin/javajs/api/SwingController.js		diff \| blob \| history
bin/javajs/api/ZInputStream.js		diff \| blob \| history
bin/javajs/awt/BorderLayout.js		diff \| blob \| history
bin/javajs/awt/Color.js		diff \| blob \| history
bin/javajs/awt/Component.js		diff \| blob \| history
bin/javajs/awt/Container.js		diff \| blob \| history
bin/javajs/awt/Dimension.js		diff \| blob \| history
bin/javajs/awt/Font.js		diff \| blob \| history
bin/javajs/awt/LayoutManager.js		diff \| blob \| history
bin/javajs/awt/event/ActionEvent.js		diff \| blob \| history
bin/javajs/awt/event/ActionListener.js		diff \| blob \| history
bin/javajs/awt/event/Event.js		diff \| blob \| history
bin/javajs/awt/event/ItemEvent.js		diff \| blob \| history
bin/javajs/awt/event/WindowEvent.js		diff \| blob \| history
bin/javajs/awt/event/WindowListener.js		diff \| blob \| history
bin/javajs/export/PDFCreator.js		diff \| blob \| history
bin/javajs/export/PDFObject.class		diff \| blob \| history
bin/javajs/export/PDFObject.js		diff \| blob \| history
bin/javajs/img/BMPDecoder.js		diff \| blob \| history
bin/javajs/img/CRCEncoder.js		diff \| blob \| history
bin/javajs/img/GifEncoder$ColorCell.class		diff \| blob \| history
bin/javajs/img/GifEncoder.class		diff \| blob \| history
bin/javajs/img/GifEncoder.js		diff \| blob \| history
bin/javajs/img/ImageEncoder.js		diff \| blob \| history
bin/javajs/img/Jpg64Encoder.js		diff \| blob \| history
bin/javajs/img/JpgEncoder.js		diff \| blob \| history
bin/javajs/img/PdfEncoder.js		diff \| blob \| history
bin/javajs/img/PngEncoder.js		diff \| blob \| history
bin/javajs/img/PpmEncoder.js		diff \| blob \| history
bin/javajs/img/package.js		diff \| blob \| history
bin/javajs/swing/AbstractButton.js		diff \| blob \| history
bin/javajs/swing/AbstractTableModel.js		diff \| blob \| history
bin/javajs/swing/ButtonGroup.js		diff \| blob \| history
bin/javajs/swing/Cell.js		diff \| blob \| history
bin/javajs/swing/ColumnSelectionModel.js		diff \| blob \| history
bin/javajs/swing/Document.js		diff \| blob \| history
bin/javajs/swing/FlowLayout.js		diff \| blob \| history
bin/javajs/swing/Grid.js		diff \| blob \| history
bin/javajs/swing/GridBagConstraints.js		diff \| blob \| history
bin/javajs/swing/GridBagLayout.js		diff \| blob \| history
bin/javajs/swing/Insets.js		diff \| blob \| history
bin/javajs/swing/JButton.js		diff \| blob \| history
bin/javajs/swing/JCheckBox.js		diff \| blob \| history
bin/javajs/swing/JCheckBoxMenuItem.js		diff \| blob \| history
bin/javajs/swing/JComboBox.js		diff \| blob \| history
bin/javajs/swing/JComponent.js		diff \| blob \| history
bin/javajs/swing/JComponentImp.js		diff \| blob \| history
bin/javajs/swing/JContentPane.js		diff \| blob \| history
bin/javajs/swing/JDialog.js		diff \| blob \| history
bin/javajs/swing/JEditorPane.js		diff \| blob \| history
bin/javajs/swing/JLabel.js		diff \| blob \| history
bin/javajs/swing/JMenu.js		diff \| blob \| history
bin/javajs/swing/JMenuItem.js		diff \| blob \| history
bin/javajs/swing/JPanel.js		diff \| blob \| history
bin/javajs/swing/JPopupMenu.js		diff \| blob \| history
bin/javajs/swing/JRadioButtonMenuItem.js		diff \| blob \| history
bin/javajs/swing/JScrollPane.js		diff \| blob \| history
bin/javajs/swing/JSplitPane.js		diff \| blob \| history
bin/javajs/swing/JTable.js		diff \| blob \| history
bin/javajs/swing/JTextField.js		diff \| blob \| history
bin/javajs/swing/JTextPane.js		diff \| blob \| history
bin/javajs/swing/ListSelectionModel.js		diff \| blob \| history
bin/javajs/swing/SwingConstants.js		diff \| blob \| history
bin/javajs/swing/TableCellRenderer.js		diff \| blob \| history
bin/javajs/swing/TableColumn.js		diff \| blob \| history
bin/javajs/util/A4.js		diff \| blob \| history
bin/javajs/util/AU.js		diff \| blob \| history
bin/javajs/util/AjaxURLConnection.js		diff \| blob \| history
bin/javajs/util/AjaxURLStreamHandler.js		diff \| blob \| history
bin/javajs/util/AjaxURLStreamHandlerFactory.js		diff \| blob \| history
bin/javajs/util/ArrayDataReader.js		diff \| blob \| history
bin/javajs/util/BArray.js		diff \| blob \| history
bin/javajs/util/BC.js		diff \| blob \| history
bin/javajs/util/BS.js		diff \| blob \| history
bin/javajs/util/Base64.js		diff \| blob \| history
bin/javajs/util/BinaryDocument.js		diff \| blob \| history
bin/javajs/util/CU.js		diff \| blob \| history
bin/javajs/util/CifDataParser.class		diff \| blob \| history
bin/javajs/util/CifDataParser.js		diff \| blob \| history
bin/javajs/util/CompoundDocDirEntry.js		diff \| blob \| history
bin/javajs/util/CompoundDocHeader.js		diff \| blob \| history
bin/javajs/util/CompoundDocument.class		diff \| blob \| history
bin/javajs/util/CompoundDocument.js		diff \| blob \| history
bin/javajs/util/DF.js		diff \| blob \| history
bin/javajs/util/DataReader.js		diff \| blob \| history
bin/javajs/util/Eigen.js		diff \| blob \| history
bin/javajs/util/Encoding.js		diff \| blob \| history
bin/javajs/util/LimitedLineReader.js		diff \| blob \| history
bin/javajs/util/ListDataReader.js		diff \| blob \| history
bin/javajs/util/Lst.js		diff \| blob \| history
bin/javajs/util/M3.js		diff \| blob \| history
bin/javajs/util/M34.js		diff \| blob \| history
bin/javajs/util/M4.js		diff \| blob \| history
bin/javajs/util/Matrix.js		diff \| blob \| history
bin/javajs/util/Measure.class		diff \| blob \| history
bin/javajs/util/Measure.js		diff \| blob \| history
bin/javajs/util/OC.class		diff \| blob \| history
bin/javajs/util/OC.js		diff \| blob \| history
bin/javajs/util/P3.js		diff \| blob \| history
bin/javajs/util/P3i.js		diff \| blob \| history
bin/javajs/util/P4.js		diff \| blob \| history
bin/javajs/util/PT.class		diff \| blob \| history
bin/javajs/util/PT.js		diff \| blob \| history
bin/javajs/util/Quat.js		diff \| blob \| history
bin/javajs/util/Rdr.class		diff \| blob \| history
bin/javajs/util/Rdr.js		diff \| blob \| history
bin/javajs/util/SB.js		diff \| blob \| history
bin/javajs/util/StringDataReader.js		diff \| blob \| history
bin/javajs/util/T3.js		diff \| blob \| history
bin/javajs/util/T3d.js		diff \| blob \| history
bin/javajs/util/T3i.js		diff \| blob \| history
bin/javajs/util/T4.js		diff \| blob \| history
bin/javajs/util/V3.js		diff \| blob \| history
bin/javajs/util/V3d.js		diff \| blob \| history
bin/javajs/util/XmlUtil.js		diff \| blob \| history
bin/javajs/util/ZipData.js		diff \| blob \| history
bin/javajs/util/ZipTools.class		diff \| blob \| history
bin/javajs/util/ZipTools.js		diff \| blob \| history
bin/lang/Messages.properties	[deleted file]	blob \| history
bin/lang/Messages_es.properties	[deleted file]	blob \| history
bin/netscape/javascript/JSException.js		diff \| blob \| history
bin/netscape/javascript/JSObject.js		diff \| blob \| history
bin/org/exolab/castor/mapping/Mapping.js		diff \| blob \| history
bin/org/exolab/castor/xml/Unmarshaller.js		diff \| blob \| history
bin/org/jmol/viewer/Viewer.js		diff \| blob \| history
bin/swingjs/JSEvent.js	[deleted file]	blob \| history
bin/swingjs/JSThread.js		diff \| blob \| history
bin/swingjs/api/DOMNode.js		diff \| blob \| history
bin/swingjs/api/JSFunction.js		diff \| blob \| history
bin/uniref50.fa	[deleted file]	blob \| history
resources/.cvsignore		diff \| blob \| history
resources/authors.props		diff \| blob \| history
resources/biojs_templates/BioJsMSA_1.0.txt		diff \| blob \| history
resources/biojs_templates/BioJsMSA_1.1.txt		diff \| blob \| history
resources/biojs_templates/Latest_BioJsMSA_1.2.txt		diff \| blob \| history
resources/embl_mapping.xml		diff \| blob \| history
resources/images/.cvsignore		diff \| blob \| history
resources/lang/Messages.properties		diff \| blob \| history
resources/lang/Messages_es.properties		diff \| blob \| history
resources/uniprot_mapping.xml		diff \| blob \| history
site/j2s/JU/DebugJS.js	[new file with mode: 0644]	blob
site/j2s/awt2swing/Scrollbar.js		diff \| blob \| history
site/j2s/core/core.js	[new file with mode: 0644]	blob
site/j2s/core/core.z.js		diff \| blob \| history
site/j2s/core/coreswingjs.js	[new file with mode: 0644]	blob
site/j2s/core/coreswingjs.z.js		diff \| blob \| history
site/j2s/jalview/analysis/AlignSeq.js		diff \| blob \| history
site/j2s/jalview/analysis/Conservation.js		diff \| blob \| history
site/j2s/jalview/datamodel/Annotation.js		diff \| blob \| history
site/j2s/jalview/io/AnnotationFile.js		diff \| blob \| history
site/j2s/jalview/io/FeaturesFile.js		diff \| blob \| history
site/j2s/jalview/io/SequenceAnnotationReport.js		diff \| blob \| history
site/j2s/jalview/viewmodel/PCAModel.js		diff \| blob \| history
site/j2s/jalview/workers/StrucConsensusThread.js		diff \| blob \| history
site/j2s/swingjs/JSImage.js		diff \| blob \| history
site/j2s/swingjs/JSToolkit.js		diff \| blob \| history
site/j2s/swingjs/plaf/HTML5LookAndFeel.java		diff \| blob \| history
site/j2s/swingjs/plaf/JSButtonListener.java		diff \| blob \| history
site/j2s/swingjs/plaf/JSButtonUI.java		diff \| blob \| history
site/j2s/swingjs/plaf/JSCheckBoxMenuItemUI.java		diff \| blob \| history
site/j2s/swingjs/plaf/JSCheckBoxUI.java		diff \| blob \| history
site/j2s/swingjs/plaf/JSComboBoxUI.java		diff \| blob \| history
site/j2s/swingjs/plaf/JSFormattedTextFieldUI.java		diff \| blob \| history
site/j2s/swingjs/plaf/JSLabelUI.java		diff \| blob \| history
site/j2s/swingjs/plaf/JSMenuBarUI.java		diff \| blob \| history
site/j2s/swingjs/plaf/JSMenuItemUI.java		diff \| blob \| history
site/j2s/swingjs/plaf/JSMenuUI.java		diff \| blob \| history
site/j2s/swingjs/plaf/JSPanelUI.java		diff \| blob \| history
site/j2s/swingjs/plaf/JSPasswordFieldUI.java		diff \| blob \| history
site/j2s/swingjs/plaf/JSPopupMenuUI.java		diff \| blob \| history
site/j2s/swingjs/plaf/JSRadioButtonMenuItemUI.java		diff \| blob \| history
site/j2s/swingjs/plaf/JSRadioButtonUI.java		diff \| blob \| history
site/j2s/swingjs/plaf/JSRootPaneUI.java		diff \| blob \| history
site/j2s/swingjs/plaf/JSScrollBarUI.java		diff \| blob \| history
site/j2s/swingjs/plaf/JSScrollBarUI.js		diff \| blob \| history
site/j2s/swingjs/plaf/JSScrollPaneUI.java		diff \| blob \| history
site/j2s/swingjs/plaf/JSSeparatorUI.java		diff \| blob \| history
site/j2s/swingjs/plaf/JSSliderUI.java		diff \| blob \| history
site/j2s/swingjs/plaf/JSSliderUI.js		diff \| blob \| history
site/j2s/swingjs/plaf/JSTextAreaUI.java		diff \| blob \| history
site/j2s/swingjs/plaf/JSTextFieldUI.java		diff \| blob \| history
site/j2s/swingjs/plaf/JSTextUI.java		diff \| blob \| history
site/j2s/swingjs/plaf/JSToolBarSeparatorUI.java		diff \| blob \| history
site/j2s/swingjs/plaf/JSViewportUI.java		diff \| blob \| history
site/j2s/swingjs/plaf/LazyActionMap.java		diff \| blob \| history
site/j2s/swingjs/plaf/TextListener.java		diff \| blob \| history
site/js/JSmol.js		diff \| blob \| history
site/js/SwingJS.js		diff \| blob \| history
site/js/SwingJSJavaExt.js	[new file with mode: 0644]	blob
site/js/SwingJSjQueryExt.js	[new file with mode: 0644]	blob
site/js/j2sSwingJS.js	[new file with mode: 0644]	blob
site/test.htm		diff \| blob \| history
site/test_2.htm		diff \| blob \| history
src/awt2swing/Scrollbar.java		diff \| blob \| history
src/fr/orsay/lri/varna/models/rna/RNA.java		diff \| blob \| history
src/jalview/analysis/Conservation.java		diff \| blob \| history
src/jalview/datamodel/SecondaryStructureAnnotation.java		diff \| blob \| history
src/jalview/ext/varna/RnaModel.java		diff \| blob \| history
src/jalview/workers/StrucConsensusThread.java		diff \| blob \| history
src/javajs/api/Interface.java		diff \| blob \| history
src/javajs/util/DebugJS.java	[new file with mode: 0644]	blob

RSS Atom