JAL-2846 ahem - proper release note for this fix from KJVDH !
[jalview.git] / examples / embedded.html
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19
20
21 <div id="view_decorated" name="view_decorated"  style="margin:8px; padding:10px; border: 2px solid red; text-align:center; display:none;"><b>Click <a href="index.html#embedded"> here</a> to view decorated page</b></div>
22
23 <!-- boiler plate link to alternate demopage -->
24 <div style="width: 100%">
25 <div style="width:35%; align:left; float:right;">
26 </div>
27 </div>
28
29 <!-- content template start -->
30 <h2>Embedded viewing of Alignments</h2>
31 <p>The alignment below was generated from the following files:
32   <ul>
33     <li><a href="plantfdx.fa">plantfdx.fa</a> - Alignment file in
34       FASTA format</li>
35     <li><a href="plantfdx.features">plantfdx.features</a> - Jalview
36       Format Sequence Features file</li>
37     <li><a href="plantfdx.annotations">plantfdx.annotations</a> -
38       Jalview Alignment Annotations File</li>
39   </ul>
40   <a href="view-source:http://www.jalview.org/builds/develop/examples/embedded.html" target="_blank">View the source code for this example here</a> (If the link doesn't work on your browser try going to <a href="http://www.jalview.org/builds/develop/examples/embedded.html">this page</a> and viewing the page source manually).<p>
41   <applet
42    code="jalview.bin.JalviewLite" width="756" height="560"
43    archive="jalviewApplet.jar,JmolApplet-14.6.4_2016.10.26.jar,java-json.jar,json_simple-1.1.jar">
44 <param name="permissions" value="sandbox"/>
45 <param name="file" value="plantfdx.fa"/>
46 <param name="features" value="plantfdx.features"/>
47 <param name="userDefinedColour" value="C=yellow; R,K,H=FF5555; D,E=5555FF"/>
48 <param name="showFullId" value="false"/>
49 <param name="embedded" value="true"/>
50    <param name="linkLabel_1" value="Uniprot"/>
51    <param name="linkUrl_1"
52      value="http://www.uniprot.org/uniprot/$SEQUENCE_ID$"/>
53    <param name="linkLabel_2" value="EMBL-EBI Search"/>
54    <param name="linkUrl_2"
55      value="http://www.ebi.ac.uk/ebisearch/search.ebi?db=allebi&query=$SEQUENCE_ID$"/>
56    <param name="APPLICATION_URL"
57      value="http://www.jalview.org/services/launchApp"/>
58 </applet>
59 </p>
60 <!-- content template end -->