2 * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3 * Copyright (C) $$Year-Rel$$ The Jalview Authors
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3
10 * of the License, or (at your option) any later version.
12 * Jalview is distributed in the hope that it will be useful, but
13 * WITHOUT ANY WARRANTY; without even the implied warranty
14 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15 * PURPOSE. See the GNU General Public License for more details.
17 * You should have received a copy of the GNU General Public License
18 * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19 * The Jalview Authors are detailed in the 'AUTHORS' file.
21 import jalview.analysis.*;
22 import jalview.datamodel.*;
23 import jalview.gui.AlignFrame;
24 import jalview.gui.AlignViewport;
26 def af = Jalview.getAlignFrames();
28 // walk through all alignments, stripping off all text prior to and including last '|' symbol in sequence IDs
32 def al = ala.viewport.alignment;
35 SequenceI[] seqs = al.getSequencesArray();
39 if (sq.getName().indexOf("|")>-1)
41 sq.setName(sq.getName().substring(sq.getName().lastIndexOf("|")+1));
42 if (sq.getDatasetSequence()!=null)
44 sq.getDatasetSequence().setName(sq.getName());