JAL-629 DON'T use quotation marks in argfiles as they are not interpreted (or needed)
[jalview.git] / examples / test_fab41.result / argfile.txt
1 --debug
2 --nonews
3 --nosplash
4 --substitutions
5 --open={argfiledirname}/sample.a2m
6 --colour=gecos:flower
7 --structure={dirname}/test_fab41_unrelaxed_rank_1_model_3.pdb
8 --paematrix=[seqid=101;label=PAE R1-M3]{dirname}/test_fab41_unrelaxed_rank_1_model_3_scores.json
9 --structure={dirname}/test_fab41_unrelaxed_rank_2_model_4.pdb
10 --paematrix=[label=PAE R2-M4]{dirname}/test_fab41_unrelaxed_rank_2_model_4_scores.json
11 --structure={dirname}/test_fab41_unrelaxed_rank_3_model_2.pdb
12 --paematrix=[label=PAE R3-M2]{dirname}/test_fab41_unrelaxed_rank_3_model_2_scores.json
13 --structure={dirname}/test_fab41_unrelaxed_rank_4_model_5.pdb
14 --paematrix=[label=PAE R4-M5]{dirname}/test_fab41_unrelaxed_rank_4_model_5_scores.json
15 --structure={dirname}/test_fab41_unrelaxed_rank_5_model_1.pdb
16 --paematrix=[label=PAE R5-M1]{dirname}/test_fab41_unrelaxed_rank_5_model_1_scores.json
17 --image={dirname}/{basename}.html
18 #--headless