JAL-629 More consistent printing of --arguments. Example nf-core argfile
[jalview.git] / examples / test_fab41.result / argfile.txt
1 --substitutions
2 --open={argfiledirname}/sample.a2m
3 --colour=gecos:flower
4 --structure={argfiledirname}/test_fab41_unrelaxed_rank_1_model_3.pdb
5 --paematrix=[label=pAE R1-M3]{argfiledirname}/test_fab41_unrelaxed_rank_1_model_3_scores.json
6 --structure={argfiledirname}/test_fab41_unrelaxed_rank_2_model_4.pdb
7 --paematrix=[label=pAE R2-M4]{argfiledirname}/test_fab41_unrelaxed_rank_2_model_4_scores.json
8 --structure={argfiledirname}/test_fab41_unrelaxed_rank_3_model_2.pdb
9 --paematrix=[label=pAE R3-M2]{argfiledirname}/test_fab41_unrelaxed_rank_3_model_2_scores.json
10 --structure={argfiledirname}/test_fab41_unrelaxed_rank_4_model_5.pdb
11 --paematrix=[label=pAE R4-M5]{argfiledirname}/test_fab41_unrelaxed_rank_4_model_5_scores.json
12 --structure={argfiledirname}/test_fab41_unrelaxed_rank_5_model_1.pdb
13 --paematrix=[label=pAE R5-M1]{argfiledirname}/test_fab41_unrelaxed_rank_5_model_1_scores.json
14 --image={dirname}/{basename}.html