jalview-jalopy.xml

   1 <?xml version="1.0" encoding="UTF-8"?>
   2 <!--
   3  * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
   4  * Copyright (C) $$Year-Rel$$ The Jalview Authors
   5  *
   6  * This file is part of Jalview.
   7  *
   8  * Jalview is free software: you can redistribute it and/or
   9  * modify it under the terms of the GNU General Public License
  10  * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
  11  *
  12  * Jalview is distributed in the hope that it will be useful, but
  13  * WITHOUT ANY WARRANTY; without even the implied warranty
  14  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
  15  * PURPOSE.  See the GNU General Public License for more details.
  16  *
  17  * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
  18  * The Jalview Authors are detailed in the 'AUTHORS' file.
  19 -->
  20 <jalopy>
  21     <general>
  22         <compliance>
  23             <version>14</version>
  24         </compliance>
  25         <style>
  26             <description>Sun Java Coding Convention</description>
  27             <name>Sun</name>
  28         </style>
  29     </general>
  30     <inspector>
  31         <enable>true</enable>
  32         <naming>
  33             <classes>
  34                 <abstract>[A-Z][a-zA-Z0-9]+</abstract>
  35                 <general>[A-Z][a-zA-Z0-9]+</general>
  36             </classes>
  37             <fields>
  38                 <default>[a-z][\w]+</default>
  39                 <defaultStatic>[a-z][\w]+</defaultStatic>
  40                 <defaultStaticFinal>[a-zA-Z][\w]+</defaultStaticFinal>
  41                 <private>[a-z][\w]+</private>
  42                 <privateStatic>[a-z][\w]+</privateStatic>
  43                 <privateStaticFinal>[a-zA-Z][\w]+</privateStaticFinal>
  44                 <protected>[a-z][\w]+</protected>
  45                 <protectedStatic>[a-z][\w]+</protectedStatic>
  46                 <protectedStaticFinal>[a-zA-Z][\w]+</protectedStaticFinal>
  47                 <public>[a-z][\w]+</public>
  48                 <publicStatic>[a-z][\w]+</publicStatic>
  49                 <publicStaticFinal>[a-zA-Z][\w]+</publicStaticFinal>
  50             </fields>
  51             <interfaces>[A-Z][a-zA-Z0-9]+</interfaces>
  52             <labels>\w+</labels>
  53             <methods>
  54                 <default>[a-z][\w]+</default>
  55                 <defaultStatic>[a-z][\w]+</defaultStatic>
  56                 <defaultStaticFinal>[a-z][\w]+</defaultStaticFinal>
  57                 <private>[a-z][\w]+</private>
  58                 <privateStatic>[a-z][\w]+</privateStatic>
  59                 <privateStaticFinal>[a-z][\w]+</privateStaticFinal>
  60                 <protected>[a-z][\w]+</protected>
  61                 <protectedStatic>[a-z][\w]+</protectedStatic>
  62                 <protectedStaticFinal>[a-z][\w]+</protectedStaticFinal>
  63                 <public>[a-z][\w]+</public>
  64                 <publicStatic>[a-z][\w]+</publicStatic>
  65                 <publicStaticFinal>[a-z][\w]+</publicStaticFinal>
  66             </methods>
  67             <packages>[a-z]+(?:\.[a-z]+)*</packages>
  68             <parameters>
  69                 <default>[a-z][\w]+</default>
  70                 <final>[a-z][\w]+</final>
  71             </parameters>
  72             <variables>[a-z][\w]*</variables>
  73         </naming>
  74         <tips>
  75             <adhereToNamingConvention>false</adhereToNamingConvention>
  76             <alwaysOverrideHashCode>false</alwaysOverrideHashCode>
  77             <avoidThreadGroups>false</avoidThreadGroups>
  78             <declareCollectionComment>false</declareCollectionComment>
  79             <dontIgnoreExceptions>false</dontIgnoreExceptions>
  80             <dontSubstituteObjectEquals>false</dontSubstituteObjectEquals>
  81             <neverDeclareException>false</neverDeclareException>
  82             <neverDeclareThrowable>false</neverDeclareThrowable>
  83             <neverInvokeWaitOutsideLoop>false</neverInvokeWaitOutsideLoop>
  84             <neverReturnZeroArrays>false</neverReturnZeroArrays>
  85             <neverUseEmptyFinally>false</neverUseEmptyFinally>
  86             <obeyContractEquals>false</obeyContractEquals>
  87             <overrideToString>false</overrideToString>
  88             <referToObjectsByInterface>false</referToObjectsByInterface>
  89             <replaceStructureWithClass>false</replaceStructureWithClass>
  90             <stringLiterallI18n>false</stringLiterallI18n>
  91             <useInterfaceOnlyForTypes>false</useInterfaceOnlyForTypes>
  92             <wrongCollectionComment>false</wrongCollectionComment>
  93         </tips>
  94     </inspector>
  95     <internal>
  96         <version>6</version>
  97     </internal>
  98     <messages>
  99         <priority>
 100             <general>30000</general>
 101             <parser>30000</parser>
 102             <parserJavadoc>30000</parserJavadoc>
 103             <printer>30000</printer>
 104             <printerJavadoc>30000</printerJavadoc>
 105             <transform>30000</transform>
 106         </priority>
 107         <showErrorStackTrace>true</showErrorStackTrace>
 108     </messages>
 109     <misc>
 110         <threadCount>1</threadCount>
 111     </misc>
 112     <printer>
 113         <alignment>
 114             <methodCallChain>true</methodCallChain>
 115             <parameterMethodDeclaration>false</parameterMethodDeclaration>
 116             <ternaryOperator>true</ternaryOperator>
 117             <variableAssignment>false</variableAssignment>
 118             <variableIdentifier>false</variableIdentifier>
 119         </alignment>
 120         <backup>
 121             <directory>bak</directory>
 122             <level>1</level>
 123         </backup>
 124         <blanklines>
 125             <after>
 126                 <block>1</block>
 127                 <braceLeft>0</braceLeft>
 128                 <class>1</class>
 129                 <declaration>0</declaration>
 130                 <footer>1</footer>
 131                 <header>0</header>
 132                 <interface>1</interface>
 133                 <lastImport>2</lastImport>
 134                 <method>1</method>
 135                 <package>1</package>
 136             </after>
 137             <before>
 138                 <block>1</block>
 139                 <braceRight>0</braceRight>
 140                 <caseBlock>1</caseBlock>
 141                 <comment>
 142                     <javadoc>1</javadoc>
 143                     <multiline>1</multiline>
 144                     <singleline>1</singleline>
 145                 </comment>
 146                 <controlStatement>1</controlStatement>
 147                 <declaration>1</declaration>
 148                 <footer>0</footer>
 149                 <header>0</header>
 150             </before>
 151             <keepUpTo>1</keepUpTo>
 152         </blanklines>
 153         <braces>
 154             <empty>
 155                 <cuddle>false</cuddle>
 156                 <insertStatement>false</insertStatement>
 157             </empty>
 158             <insert>
 159                 <dowhile>false</dowhile>
 160                 <for>false</for>
 161                 <ifelse>true</ifelse>
 162                 <while>false</while>
 163             </insert>
 164             <remove>
 165                 <block>true</block>
 166                 <dowhile>false</dowhile>
 167                 <for>false</for>
 168                 <ifelse>false</ifelse>
 169                 <while>false</while>
 170             </remove>
 171             <treatDifferent>
 172                 <methodClass>false</methodClass>
 173                 <methodClassIfWrapped>false</methodClassIfWrapped>
 174             </treatDifferent>
 175         </braces>
 176         <chunks>
 177             <blanklines>true</blanklines>
 178             <comments>true</comments>
 179         </chunks>
 180         <comments>
 181             <format>
 182                 <multiline>false</multiline>
 183             </format>
 184             <javadoc>
 185                 <check>
 186                     <innerclass>true</innerclass>
 187                     <tags>true</tags>
 188                     <throwsTags>true</throwsTags>
 189                 </check>
 190                 <fieldsShort>true</fieldsShort>
 191                 <generate>
 192                     <class>5</class>
 193                     <constructor>5</constructor>
 194                     <field>5</field>
 195                     <method>5</method>
 196                 </generate>
 197                 <parseComments>false</parseComments>
 198                 <tags>
 199                     <in-line />
 200                     <standard />
 201                 </tags>
 202                 <templates>
 203                     <method>
 204                         <bottom> */</bottom>
 205                         <exception> * @throws $exceptionType$ TODO: DOCUMENT ME!</exception>
 206                         <param> * @param $paramType$ TODO: DOCUMENT ME!</param>
 207                         <return> * @return TODO: DOCUMENT ME!</return>
 208                         <top>/**| * TODO: DOCUMENT ME!</top>
 209                     </method>
 210                 </templates>
 211             </javadoc>
 212             <remove>
 213                 <javadoc>false</javadoc>
 214                 <multiline>false</multiline>
 215                 <singleline>false</singleline>
 216             </remove>
 217             <separator>
 218                 <fillCharacter>-</fillCharacter>
 219                 <insert>false</insert>
 220                 <insertRecursive>false</insertRecursive>
 221                 <text>
 222                     <class>Inner Classes</class>
 223                     <constructor>Constructors</constructor>
 224                     <field>Instance fields</field>
 225                     <initializer>Instance initializers</initializer>
 226                     <interface>Inner Interfaces</interface>
 227                     <method>Methods</method>
 228                     <static>Static fields/initializers</static>
 229                 </text>
 230             </separator>
 231         </comments>
 232         <environment />
 233         <footer>
 234             <keys />
 235             <smartMode>0</smartMode>
 236             <use>false</use>
 237         </footer>
 238         <header>
 239             <keys />
 240             <smartMode>0</smartMode>
 241             <use>false</use>
 242         </header>
 243         <history>
 244             <policy>disabled</policy>
 245         </history>
 246         <imports>
 247             <grouping>
 248                 <defaultDepth>3</defaultDepth>
 249                 <packages>*:0|gnu:2|java:2|javax:2</packages>
 250             </grouping>
 251             <policy>disabled</policy>
 252             <sort>true</sort>
 253         </imports>
 254         <indentation>
 255             <caseFromSwitch>true</caseFromSwitch>
 256             <continuation>
 257                 <block>true</block>
 258                 <operator>false</operator>
 259             </continuation>
 260             <firstColumnComments>true</firstColumnComments>
 261             <label>false</label>
 262             <policy>
 263                 <deep>false</deep>
 264             </policy>
 265             <sizes>
 266                 <braceCuddled>1</braceCuddled>
 267                 <braceLeft>1</braceLeft>
 268                 <braceRight>0</braceRight>
 269                 <braceRightAfter>1</braceRightAfter>
 270                 <continuation>4</continuation>
 271                 <deep>55</deep>
 272                 <extends>-1</extends>
 273                 <general>4</general>
 274                 <implements>-1</implements>
 275                 <leading>0</leading>
 276                 <tabs>8</tabs>
 277                 <throws>-1</throws>
 278                 <trailingComment>1</trailingComment>
 279             </sizes>
 280             <tabs>
 281                 <enable>false</enable>
 282                 <onlyLeading>false</onlyLeading>
 283             </tabs>
 284         </indentation>
 285         <misc>
 286             <arrayBracketsAfterIdent>false</arrayBracketsAfterIdent>
 287             <forceFormatting>false</forceFormatting>
 288             <insertExpressionParentheses>true</insertExpressionParentheses>
 289             <insertLoggingConditional>false</insertLoggingConditional>
 290             <insertTrailingNewline>true</insertTrailingNewline>
 291             <insertUID>false</insertUID>
 292         </misc>
 293         <sorting>
 294             <declaration>
 295                 <class>false</class>
 296                 <constructor>false</constructor>
 297                 <enable>false</enable>
 298                 <interface>false</interface>
 299                 <method>false</method>
 300                 <order>static|field|initializer|constructor|method|interface|class</order>
 301                 <variable>false</variable>
 302             </declaration>
 303             <modifier>
 304                 <enable>false</enable>
 305                 <order>public|protected|private|abstract|static|final|synchronized|transient|volatile|native|strictfp</order>
 306             </modifier>
 307         </sorting>
 308         <whitespace>
 309             <after>
 310                 <comma>true</comma>
 311                 <semicolon>true</semicolon>
 312                 <typeCast>true</typeCast>
 313             </after>
 314             <before>
 315                 <braces>true</braces>
 316                 <brackets>false</brackets>
 317                 <bracketsTypes>false</bracketsTypes>
 318                 <caseColon>false</caseColon>
 319                 <operator>
 320                     <not>false</not>
 321                 </operator>
 322                 <parentheses>
 323                     <methodCall>false</methodCall>
 324                     <methodDeclaration>false</methodDeclaration>
 325                     <statement>true</statement>
 326                 </parentheses>
 327             </before>
 328             <padding>
 329                 <braces>true</braces>
 330                 <brackets>false</brackets>
 331                 <operator>
 332                     <assignment>true</assignment>
 333                     <bitwise>true</bitwise>
 334                     <logical>true</logical>
 335                     <mathematical>true</mathematical>
 336                     <relational>true</relational>
 337                     <shift>true</shift>
 338                 </operator>
 339                 <parenthesis>false</parenthesis>
 340                 <typeCast>false</typeCast>
 341             </padding>
 342         </whitespace>
 343         <wrapping>
 344             <always>
 345                 <after>
 346                     <arrayElement>0</arrayElement>
 347                     <braceRight>false</braceRight>
 348                     <extendsTypes>false</extendsTypes>
 349                     <implementsTypes>false</implementsTypes>
 350                     <label>true</label>
 351                     <methodCallChained>false</methodCallChained>
 352                     <ternaryOperator>
 353                         <first>false</first>
 354                         <second>false</second>
 355                     </ternaryOperator>
 356                     <throwsTypes>false</throwsTypes>
 357                 </after>
 358                 <before>
 359                     <braceLeft>false</braceLeft>
 360                     <extends>false</extends>
 361                     <implements>false</implements>
 362                     <throws>false</throws>
 363                 </before>
 364                 <parameter>
 365                     <methodCall>false</methodCall>
 366                     <methodCallNested>false</methodCallNested>
 367                     <methodDeclaration>false</methodDeclaration>
 368                 </parameter>
 369             </always>
 370             <general>
 371                 <beforeOperator>true</beforeOperator>
 372                 <enable>true</enable>
 373                 <lineLength>80</lineLength>
 374             </general>
 375             <ondemand>
 376                 <after>
 377                     <assignment>false</assignment>
 378                     <leftParenthesis>false</leftParenthesis>
 379                     <parameter>false</parameter>
 380                     <types>
 381                         <extends>false</extends>
 382                         <implements>false</implements>
 383                         <throws>false</throws>
 384                     </types>
 385                 </after>
 386                 <before>
 387                     <rightParenthesis>false</rightParenthesis>
 388                 </before>
 389                 <groupingParentheses>false</groupingParentheses>
 390             </ondemand>
 391         </wrapping>
 392     </printer>
 393 </jalopy>
 394