1 action.refresh_services = Refresh Services
2 action.reset_services = Reset Services
3 action.merge_results = Merge Results
4 action.load_scheme = Load scheme
5 action.save_scheme = Save scheme
6 label.scheme_changed = Changes to scheme ''{0}'' have not been saved.<br><br>Save changes, or continue without saving to make a new colour scheme.
7 label.save_changes = Save Changes
8 label.dont_save_changes = Don't Save
9 action.save_image = Save Image
11 action.show_html_source = Show HTML Source
12 action.print = Print...
13 action.web_service = Web Service
14 action.cancel_job = Cancel Job
15 action.start_job = Start Job
16 action.revert = Revert
17 action.move_down = Move Down
18 action.move_up = Move Up
19 action.remove_return_datatype = Remove return datatype
20 action.add_return_datatype = Add return datatype
21 action.remove_input_parameter = Remove selected input parameter
22 action.add_input_parameter = Add input parameter
25 action.open_file = Open file
26 action.show_unconserved = Show Unconserved
27 action.open_new_alignment = Open new alignment
28 action.raise_associated_windows = Raise Associated Windows
29 action.minimize_associated_windows = Minimize Associated Windows
30 action.close_all = Close all
31 action.load_project = Load Project
32 action.save_project = Save Project
33 action.save_project_as = Save Project as...
35 action.force_quit = Force quit
36 label.quit_jalview = Are you sure you want to quit Jalview?
37 label.wait_for_save = Wait for save
38 label.unsaved_changes = There are unsaved changes.
39 label.unsaved_alignments = There are unsaved alignments.
40 label.save_in_progress = Some files are still saving:
41 label.confirm_quit_viewer = An external viewer is still open. Close the external window as well?
42 label.confirm_quit_viewers = External viewers are still open. Close these external windows as well?
43 label.unknown = Unknown
44 label.quit_after_saving = Jalview will quit after saving.
45 label.all_saved = All files saved.
46 label.quitting_bye = Quitting, bye!
48 action.cancel_quit = Cancel quit
49 action.expand_views = Expand Views
50 action.gather_views = Gather Views
51 action.page_setup = Page Setup...
52 action.reload = Reload
55 action.cancel = Cancel
56 action.create = Create
57 action.update = Update
58 action.delete = Delete
60 action.accept = Accept
61 action.select_ddbb = --- Select Database ---
65 action.remove_left = Remove left
66 action.remove_right = Remove right
67 action.remove_empty_columns = Remove Empty Columns
68 action.remove_all_gaps = Remove All Gaps
69 action.left_justify_alignment = Left Justify Alignment
70 action.right_justify_alignment = Right Justify Alignment
73 action.by_pairwise_id = By Pairwise Identity
75 action.by_length = By Length
76 action.by_group = By Group
77 action.unmark_as_reference = Unmark as Reference
78 action.set_as_reference = Set as Reference
79 action.remove = Remove
80 action.remove_redundancy = Remove Redundancy...
81 action.pairwise_alignment = Pairwise Alignment
82 action.user_defined = User Defined...
83 action.by_conservation = By Conservation
85 action.show_gaps = Show Gaps
86 action.show_hidden_markers = Show Hidden Markers
88 action.undefine_groups = Undefine Groups
89 action.make_groups_selection = Make Groups For Selection
93 action.scale_above = Scale Above
94 action.scale_left = Scale Left
95 action.scale_right = Scale Right
96 action.by_tree_order = By Tree Order
98 action.calculate_tree = Calculate Tree...
99 action.calculate_tree_pca = Calculate Tree or PCA...
101 action.by_annotation = By Annotation...
102 action.invert_sequence_selection = Invert Sequence Selection
103 action.invert_column_selection = Invert Column Selection
107 action.set_defaults = Defaults
108 action.create_group = Create Group
109 action.remove_group = Remove Group
110 action.edit_group = Edit Group
111 action.border_colour = Border colour
112 action.edit_new_group = Edit New Group
113 action.hide_sequences = Hide Sequences
114 action.sequences = Sequences
116 action.ids_sequences = IDS and sequences
117 action.reveal_all = Reveal All
118 action.reveal_sequences = Reveal Sequences
119 action.find_all = Find all
120 action.find_next = Find next
123 action.annotations = Annotations
124 action.change_params = Change Parameters
126 action.apply_threshold_all_groups = Apply threshold to all groups
127 action.apply_all_groups = Apply to all Groups
128 action.by_chain = By Chain
129 action.by_sequence = By Sequence
130 action.paste_annotations = Paste Annotations
131 action.format = Format
132 action.select = Select
133 action.new_view = New View
134 action.new_structure_view_with = Open new structure view with {0}
137 action.save_as = Save as...
139 action.change_font = Change Font
140 action.change_font_tree_panel = Change Font (Tree Panel)
141 action.colour = Colour
142 action.calculate = Calculate
143 action.select_all = Select all
144 action.select_highlighted_columns = Select Highlighted Columns
145 tooltip.select_highlighted_columns = Press B to mark highlighted columns, Ctrl-(or Cmd)-B to toggle, and Alt-B to mark all but highlighted columns
146 action.copy_highlighted_regions = Copy Highlighted Regions
147 tooltip.copy_highlighted_regions = Copies highlighted sequence regions to the clipboard for export or further analysis
148 action.deselect_all = Deselect all
149 action.invert_selection = Invert selection
150 action.using_jmol = Using Jmol
151 action.undo_changes_to_feature_settings = Undo all unapplied changes to feature settings
152 action.undo_changes_to_feature_settings_and_close_the_dialog = Undo all pending changes and close the feature settings dialog
154 action.group_link = Group Link
155 action.show_chain = Show Chain
156 action.show_group = Show Group
157 action.fetch_db_references = Fetch DB References
158 action.view_flanking_regions = Show flanking regions
159 label.view_flanking_regions = Show sequence data either side of the subsequences involved in this alignment
160 label.structures_manager = Structures Manager
163 label.input_file_url = Enter URL or Input File
164 label.select_feature = Select feature
167 label.name_param = Name: {0}
169 label.group\: = Group:
170 label.group_name = Group Name
171 label.group_description = Group Description
172 label.edit_group_name_description = Edit Group Name/Description
173 label.colour = Colour:
174 label.description = Description
175 label.description\: = Description:
178 label.current_parameter_set_name = Current parameter set name:
179 label.service_action = Service Action:
180 label.post_url = POST URL:
181 label.url_suffix = URL Suffix
182 label.per_seq = per Sequence
183 label.result_vertically_separable = Results are vertically separable
185 label.undo_command = Undo {0}
186 label.redo_command = Redo {0}
187 label.principal_component_analysis = Principal Component Analysis
188 label.average_distance_identity = Average Distance Using % Identity
189 label.neighbour_joining_identity = Neighbour Joining Using % Identity
190 label.choose_calculation = Choose Calculation
191 label.calc_title = {0} Using {1}
192 label.tree_calc_av = Average Distance
193 label.tree_calc_nj = Neighbour Joining
194 label.score_model_pid = % Identity
195 label.score_model_blosum62 = BLOSUM62
196 label.score_model_pam250 = PAM 250
197 label.score_model_smithwatermanscore = Score between two sequences aligned with Smith-Waterman with default Peptide/Nucleotide matrix
198 label.score_model_sequencefeaturesimilarity = Distance measure of average number of features not shared at sequence positions
199 label.score_model_conservation = Physicochemical property conservation
200 label.score_model_enhconservation = Physicochemical property conservation
201 label.status_bar = Status bar
202 label.out_to_textbox = Output to Textbox
203 label.occupancy = Occupancy
204 # delete Clustal - use FileFormat name instead
205 label.clustal = Clustal
206 # label.colourScheme_<schemeName> as in JalviewColourScheme, spaces removed
207 label.colourScheme_clustal = Clustal
208 label.colourScheme_blosum62 = BLOSUM62 Score
209 label.colourScheme_%identity = Percentage Identity
210 label.colourScheme_zappo = Zappo
211 label.colourScheme_taylor = Taylor
212 label.colourScheme_hydrophobic = Hydrophobicity
213 label.colourScheme_helixpropensity = Helix Propensity
214 label.colourScheme_strandpropensity = Strand Propensity
215 label.colourScheme_turnpropensity = Turn Propensity
216 label.colourScheme_buriedindex = Buried Index
217 label.colourScheme_purine/pyrimidine = Purine/Pyrimidine
218 label.colourScheme_nucleotide = Nucleotide
219 label.colourScheme_nucleotideambiguity = Nucleotide Ambiguity
220 label.colourScheme_t-coffeescores = T-Coffee Scores
221 label.colourScheme_rnahelices = By RNA Helices
222 label.colourScheme_sequenceid = Sequence ID Colour
223 label.colourScheme_gecos-flower = gecos Flower
224 label.colourScheme_gecos-blossom = gecos Blossom
225 label.colourScheme_gecos-sunset = gecos Sunset
226 label.colourScheme_gecos-ocean = gecos Ocean
231 label.pileup = Pileup
233 label.average_distance_blosum62 = Average Distance Using BLOSUM62
234 label.neighbour_blosum62 = Neighbour Joining Using BLOSUM62
235 label.show_annotations = Show annotations
236 label.hide_annotations = Hide annotations
237 label.show_all_seq_annotations = Show sequence related
238 label.hide_all_seq_annotations = Hide sequence related
239 label.show_all_al_annotations = Show alignment related
240 label.hide_all_al_annotations = Hide alignment related
241 label.hide_all = Hide all
242 label.add_reference_annotations = Add reference annotations
243 label.find_tip = Search alignment, selection or sequence ids for a subsequence (ignoring gaps).<br>Accepts regular expressions - search Help for 'regex' for details.
244 label.colour_text = Colour Text
245 label.show_non_conserved = Show nonconserved
246 label.overview_window = Overview Window
248 label.above_identity_threshold = Above Identity Threshold
249 label.show_sequence_features = Show Sequence Features
250 label.nucleotide = Nucleotide
251 label.protein = Protein
252 label.nucleotides = Nucleotides
253 label.proteins = Proteins
255 label.to_new_alignment = To New Alignment
256 label.to_this_alignment = Add To This Alignment
257 label.apply_colour_to_all_groups = Apply Colour To All Groups
258 label.modify_identity_threshold = Modify Identity Threshold...
259 label.modify_conservation_threshold = Modify Conservation Threshold...
260 label.input_from_textbox = Input from textbox
261 label.centre_column_labels = Centre column labels
262 label.automatic_scrolling = Automatic Scrolling
263 label.documentation = Documentation
264 label.about = About...
265 label.show_sequence_limits = Show Sequence Limits
266 action.feature_settings = Feature Settings...
267 label.all_columns = All Columns
268 label.all_sequences = All Sequences
269 label.selected_columns = Selected Columns
270 label.selected_sequences = Selected Sequences
271 label.except_selected_sequences = All except selected sequences
272 label.all_but_selected_region = All but Selected Region (Shift+Ctrl+H)
273 label.selected_region = Selected Region
274 label.all_sequences_columns = All Sequences and Columns
275 label.hide_selected_annotations = Hide selected annotations
276 label.show_selected_annotations = Show selected annotations
277 label.group_consensus = Group Consensus
278 label.group_conservation = Group Conservation
279 label.show_consensus_histogram = Show Consensus Histogram
280 label.show_consensus_logo = Show Consensus Logo
281 label.norm_consensus_logo = Normalise Consensus Logo
282 label.apply_all_groups = Apply to all groups
283 label.autocalculated_annotation = Autocalculated Annotation
284 label.show_first = Show first
285 label.show_last = Show last
286 label.struct_from_pdb = Process secondary structure from PDB
287 label.use_rnaview = Use RNAView for secondary structure
288 label.autoadd_secstr = Add secondary structure annotation to alignment
289 label.autoadd_temp = Add Temperature Factor annotation to alignment
290 label.structure_viewer = Default structure viewer
291 label.double_click_to_browse = Double-click to browse for file
292 label.viewer_path = Path to {0} program
293 label.viewer_path_tip = Jalview will first try any path entered here, else standard installation locations.<br>Double-click to browse for file.
294 label.invalid_viewer_path = Path not found or not executable
295 label.viewer_missing = Structure viewer not found.<br/>Please enter the path to the executable (if installed),<br/>or download and install the program.
296 label.open_viewer_failed = Error opening {0} - is it installed?\nCheck configured path in Structure tab of Jalview''s Preferences
297 label.min_colour = Minimum Colour
298 label.max_colour = Maximum Colour
299 label.no_colour = No Colour
300 label.use_original_colours = Use Original Colours
301 label.threshold_minmax = Threshold is min/max
302 label.represent_group_with = Represent Group with {0}
303 label.selection = Selection
304 label.group_colour = Group Colour
305 label.sequence = Sequence
306 label.view_pdb_structure = View PDB Structure
307 label.min_value = Min value
308 label.max_value = Max value
309 label.no_value = No value
310 label.new_feature = New Feature
311 label.match_case = Match Case
312 label.view_alignment_editor = View in alignment editor
313 label.labels = Labels
314 label.output_values = Output Values...
315 label.output_points = Output points...
316 label.output_transformed_points = Output transformed points
317 label.input_data = Input Data...
318 label.nucleotide_matrix = Nucleotide matrix
319 label.protein_matrix = Protein matrix
320 label.show_bootstrap_values = Show Bootstrap Values
321 label.show_distances = Show distances
322 label.mark_unassociated_leaves = Mark Unassociated Leaves
323 label.fit_to_window = Fit To Window
324 label.newick_format = Newick Format
325 label.select_newick_like_tree_file = Select a newick-like tree file
326 label.colours = Colours
327 label.view_mapping = View Mapping
328 label.wireframe = Wireframe
329 label.depthcue = Depthcue
330 label.z_buffering = Z Buffering
331 label.charge_cysteine = Charge & Cysteine
332 label.all_chains_visible = All Chains Visible
333 label.successfully_added_features_alignment = Successfully added features to alignment
334 label.keyboard_editing_mode = Keyboard editing mode is {0}
335 label.paste_features_annotations_Tcoffee_here = Paste your features / annotations / T-coffee score file here.
336 label.removed_columns = Removed {0} columns.
337 label.removed_empty_columns = Removed {0} empty columns.
338 label.paste_newick_tree_file = Paste your Newick tree file here.
339 label.order_by_params = Order by {0}
340 label.html_content = <html>{0}</html>
341 label.paste_pdb_file= Paste your PDB file here.
342 label.paste_pdb_file_for_sequence = Paste PDB file for sequence {0}
343 label.could_not_parse_newick_file = Could not parse Newick file\!\n {0}
344 label.successfully_pasted_tcoffee_scores_to_alignment= Successfully pasted T-Coffee scores to alignment.
345 label.failed_add_tcoffee_scores = Failed to add T-Coffee scores:
346 label.successfully_pasted_annotation_to_alignment= Successfully pasted annotation to alignment.
347 label.couldnt_parse_pasted_text_as_valid_annotation_feature_GFF_tcoffee_file = Couldn't parse pasted text as a valid annotation, feature, GFF, or T-Coffee score file
348 label.successfully_pasted_alignment_file = Successfully pasted alignment file
349 label.paste_your_alignment_file = Paste your alignment file here
350 label.paste_your = Paste your
351 label.finished_searching = Finished searching
352 label.subsequence_matches_found = {0} subsequence matches found
353 label.search_results= Search results {0} : {1}
354 label.found_match_for = Found match for {0}
358 label.calculating = Calculating....
359 label.modify_conservation_visibility = Modify conservation visibility
360 label.colour_residues_above_occurrence = Colour residues above % occurrence
361 label.set_this_label_text = set this label text
362 label.sequences_from = Sequences from {0}
363 label.successfully_loaded_file = Successfully loaded file {0}
364 label.successfully_loaded_matrix = Successfully loaded score matrix {0}
365 label.successfully_saved_to_file_in_format = Successfully saved to file: {0} in {1} format.
366 label.successfully_printed_to_stdout_in_format = Successfully printed to STDOUT in {0} format.
367 label.copied_sequences_to_clipboard = Copied {0} sequences to clipboard.
368 label.check_file_matches_sequence_ids_alignment = Check that the file matches sequence IDs in the alignment.
369 label.problem_reading_tcoffee_score_file = Problem reading T-COFFEE score file
370 label.source_to_target = {0} ... {1}
371 label.per_sequence_only= Per-sequence only
372 label.to_file = to File
373 label.to_textbox = to Textbox
374 label.jalview = Jalview
375 label.csv_spreadsheet = CSV (Spreadsheet)
376 label.status = Status
377 label.channels = Channels
378 label.channel_title_item_count = {0} ({1})
379 label.blog_item_published_on_date = {0} {1}
380 label.groovy_console = Groovy Console...
381 label.lineart = Lineart
382 label.dont_ask_me_again = Don't ask me again
383 label.select_character_rendering_style = {0} character rendering style
384 label.select_character_style_title = {0} Rendering options
385 label.invert_selection = Invert Selection
386 label.optimise_order = Optimise Order
387 label.seq_sort_by_score = Sequence sort by Score
388 label.load_colours = Load Colours
389 label.save_colours = Save Colours
390 label.load_colours_tooltip = Load feature colours and filters from file
391 label.save_colours_tooltip = Save feature colours and filters to file
392 label.selected_database_to_fetch_from = Selected {0} database {1} to fetch from {2}
393 label.database_param = Database: {0}
394 label.example = Example
395 label.example_param = Example: {0}
396 label.select_file_format_before_saving = You must select a file format before saving!
397 label.file_format_not_specified = File format not specified
398 label.couldnt_save_file = Couldn''t save file: {0}
399 label.error_saving_file = Error Saving File
400 label.remove_from_default_list = Remove from default list?
401 label.remove_user_defined_colour = Remove user defined colour
402 label.you_must_select_least_two_sequences = You must select at least 2 sequences.
403 label.invalid_selection = Invalid Selection
404 label.sequence_selection_insufficient = Sequence selection insufficient
405 label.you_need_at_least_n_sequences = You need to select at least {0} sequences
406 label.not_enough_sequences = Not enough sequences
407 label.selected_region_to_tree_may_only_contain_residues_or_gaps = The selected region to create a tree may\nonly contain residues or gaps.\nTry using the Pad function in the edit menu,\nor one of the multiple sequence alignment web services.
408 label.sequences_selection_not_aligned = Sequences in selection are not aligned
409 label.problem_reading_tree_file = Problem reading tree file
410 label.possible_problem_with_tree_file = Possible problem with tree file
411 label.select_at_least_three_bases_in_at_least_one_sequence_to_cDNA_translation = Please select at least three bases in at least one sequence in order to perform a cDNA translation.
412 label.translation_failed = Translation Failed
413 label.error_when_translating_sequences_submit_bug_report = Unfortunately, something went wrong when translating your sequences.\nPlease take a look in the Jalview java console\nand submit a bug report including the stacktrace.
414 label.implementation_error = Implementation error:
415 label.automatically_associate_structure_files_with_sequences_same_name = Do you want to automatically associate the {0} structure file(s) with sequences in the alignment that have the same name?
416 label.automatically_associate_structure_files_by_name = Automatically Associate Structure files by name
417 label.ignore_unmatched_dropped_files_info = <html>Do you want to <em>ignore</em> the {0} files whose names did not match any sequence IDs ?</html>
418 label.ignore_unmatched_dropped_files = Ignore unmatched dropped files?
419 label.view_name_original = Original
420 label.enter_view_name = Enter View Name
421 label.enter_label = Enter label
422 label.enter_label_for_the_structure = Enter a label for the structure
423 label.pdb_entries_couldnt_be_retrieved = The following pdb entries could not be retrieved from the PDB\:\n{0}\nPlease retry, or try downloading them manually.
424 label.couldnt_load_file = Couldn't load file
425 label.couldnt_find_pdb_id_in_file = Couldn't find a PDB id in the file supplied. Please enter an Id to identify this structure.
426 label.no_pdb_id_in_file = No PDB Id in File
427 label.couldnt_read_pasted_text = Couldn''t read the pasted text {0}
428 label.error_parsing_text = Error parsing text
429 label.input_alignment_from_url = Input Alignment From URL
430 label.input_alignment = Input Alignment
431 label.vamsas_document_import_failed = Vamsas Document Import Failed
432 label.couldnt_locate = Couldn''t locate {0}
433 label.url_not_found = URL not found
434 label.new_sequence_url_link = New sequence URL link
435 label.error_retrieving_data = Error Retrieving Data
436 label.user_colour_scheme_must_have_name = User colour scheme must have a name
437 label.no_name_colour_scheme = No name for colour scheme
438 label.invalid_url = Invalid URL !
439 label.error_loading_file = Error loading file
440 label.problems_opening_file = Encountered problems opening {0}!!
441 label.file_open_error = File open error
442 label.colour_scheme_exists_overwrite = Colour scheme {0} exists.\nContinue saving colour scheme as {1}?"
443 label.duplicate_scheme_name = Duplicate scheme name
444 label.jalview_new_questionnaire = There is a new Questionnaire available. Would you like to complete it now ?\n
445 label.jalview_user_survey = Jalview User Survey
446 label.alignment_properties = Alignment Properties: {0}
447 label.alignment_props = Alignment Properties
448 label.input_cut_paste = Cut & Paste Input
449 label.input_cut_paste_params = Cut & Paste Input - {0}
450 label.alignment_output_command = Alignment output - {0}
451 label.annotations = Annotations
452 label.structure_options = Structure Options
453 label.structure_import_options = Structure Import Options
454 label.features = Features
455 label.overview_params = Overview {0}
456 label.paste_newick_file = Paste Newick file
457 label.load_tree_from_file = From File -
458 label.colour_by_annotation = Colour by Annotation
459 label.selection_output_command = Selection output - {0}
460 label.annotation_for_displayid = <p><h2>Annotation for {0} </h2></p><p>
461 label.pdb_sequence_mapping = PDB - Sequence Mapping
462 label.pca_details = PCA details
463 label.redundancy_threshold_selection = Redundancy threshold selection
464 label.user_defined_colours = User defined colours
465 label.jalviewLite_release = JalviewLite - Release {0}
466 label.jaview_build_date = Build date: {0}
467 label.jalview_authors_1 = Authors: Jim Procter, Andrew Waterhouse, Mungo Carstairs, Tochukwu Ofoegbu, Lauren Lui, Jan Engelhardt,
468 label.jalview_authors_2 = Natasha Sherstnev, Daniel Barton, Michele Clamp, James Cuff, Steve Searle, David Martin & Geoff Barton.
469 label.jalview_dev_managers = Development managed by The Barton Group, University of Dundee, Scotland, UK.
470 label.jalview_distribution_lists = For help, see the FAQ at www.jalview.org and/or join the jalview-discuss@jalview.org mailing list
471 label.jalview_please_cite = If you use Jalview, please cite:
472 label.jalview_cite_1_authors = Waterhouse, A.M., Procter, J.B., Martin, D.M.A, Clamp, M. and Barton, G. J. (2009)
473 label.jalview_cite_1_title = Jalview Version 2 - a multiple sequence alignment editor and analysis workbench
474 label.jalview_cite_1_ref = Bioinformatics doi: 10.1093/bioinformatics/btp033
475 label.right_click = Right click
476 label.to_add_annotation = to add annotation
477 label.alignment_has_no_annotations = Alignment has no annotations
478 label.retrieving_pdb_data = Retrieving PDB data...
480 label.no_features_added_to_this_alignment = No Features added to this alignment!!
481 label.features_can_be_added_from_searches_1 = (Features can be added from searches or
482 label.features_can_be_added_from_searches_2 = from Jalview / GFF features files)
483 label.calculating_pca= Calculating PCA
484 label.jalview_cannot_open_file = Jalview can't open file
485 label.jalview_applet = Jalview applet
486 label.loading_data = Loading data
487 label.memory_stats = Total Free Memory: {0} MB; Max Memory: {1} MB; {2} %
488 label.calculating_tree = Calculating tree
489 label.state_queueing = queuing
490 label.state_running = running
491 label.state_completed = finished
492 label.state_job_cancelled = job cancelled!!
493 label.state_job_error = job error!
494 label.server_error_try_later = Server Error! (try later)
495 label.error_loading_pdb_data = Error loading PDB data!!
496 label.fetching_pdb_data = Fetching PDB data...
497 label.structure_type = Structure type
498 label.settings_for_type = Settings for {0}
499 label.view_full_application = View in Full Application
500 label.load_associated_tree = Load Associated Tree...
501 label.load_features_annotations = Load Features/Annotations...
502 label.load_vcf = Load SNP variants from plain text or indexed VCF data
503 label.load_vcf_file = Load VCF File
504 label.searching_vcf = Loading VCF variants...
505 label.added_vcf = Added {0} VCF variants to {1} sequence(s)
506 label.export_features = Export Features...
507 label.export_annotations = Export Annotations...
508 label.to_upper_case = To Upper Case
509 label.to_lower_case = To Lower Case
510 label.toggle_case = Toggle Case
511 label.edit_name_description = Edit Name/Description...
512 label.create_sequence_feature = Create Sequence Feature...
513 label.edit_sequence = Edit Sequence
514 label.edit_sequences = Edit Sequences
515 label.insert_gap = Insert 1 gap
516 label.insert_gaps = Insert {0} gaps
517 label.delete_gap = Delete 1 gap
518 label.delete_gaps = Delete {0} gaps
519 label.sequence_details = Sequence Details
520 label.viewer_help = {0} Help
521 label.close_viewer = Close Viewer
522 label.close_viewers = Close Viewers
523 label.confirm_close_viewer = This will close Jalview''s connection to {0}.<br>Do you want to close the {1} window as well?
525 label.sort_by = Sort alignment by
526 label.sort_by_score = Sort by Score
527 label.sort_by_density = Sort by Density
528 label.sequence_sort_by_density = Sequence sort by Density
529 label.sort_ann_by = Sort annotations by
530 label.sort_annotations_by_sequence = Sort by sequence
531 label.sort_annotations_by_label = Sort by label
532 label.reveal = Reveal
533 label.hide_columns = Hide Columns
534 label.load_jalview_annotations = Load Jalview Annotations or Features File
535 label.load_tree_file = Load a tree file
536 label.retrieve_parse_sequence_database_records_alignment_or_selected_sequences = Retrieve and parse sequence database records for the alignment or the currently selected sequences
537 label.standard_databases = Standard Databases
538 label.fetch_embl_uniprot = Fetch from EMBL/EMBLCDS or Uniprot/PDB and any selected DAS sources
539 label.fetch_uniprot_references = Fetch Uniprot references
540 label.search_3dbeacons = Search 3D-Beacons
541 label.find_models_from_3dbeacons = Search 3D-Beacons for 3D structures and models
542 label.3dbeacons = 3D-Beacons
543 label.fetch_references_for = Fetch database references for {0} sequences ?
544 label.fetch_references_for_3dbeacons = 3D Beacons needs to fetch Uniprot References for {0} sequences. Do you want to continue ?
545 label.reset_min_max_colours_to_defaults = Reset min and max colours to defaults from user preferences.
546 label.align_structures_using_linked_alignment_views = Superpose structures using {0} selected alignment view(s)
547 label.threshold_feature_display_by_score = Threshold the feature display by score.
548 label.threshold_feature_no_threshold = No Threshold
549 label.threshold_feature_above_threshold = Above Threshold
550 label.threshold_feature_below_threshold = Below Threshold
551 label.adjust_threshold = Adjust threshold
552 label.toggle_absolute_relative_display_threshold = Toggle between absolute and relative display threshold.
553 label.select_colour_minimum_value = Select Colour for Minimum Value
554 label.select_colour_maximum_value = Select Colour for Maximum Value
555 label.open_url_param = Open URL {0}
556 label.open_url_seqs_param = Open URL ({0}..) ({1} seqs)
557 label.load_pdb_file_associate_with_sequence = Load a PDB file and associate it with sequence {0}
558 label.load_pae_matrix_file_associate_with_structure = Load a PAE matrix file and associate it with structure {0}
559 label.reveal_hidden_columns = Reveal Hidden Columns with Right Mouse Button
560 label.dark_colour = Dark Colour
561 label.light_colour = Light Colour
562 label.highlightnode = Left click to select leaves.<br>Double-click to invert leaves.<br>Right click to change colour.
563 label.load_colour_scheme = Load colour scheme
564 label.copy_format_from = Copy format from
565 label.toggle_enabled_views = When enabled, allows many views to be selected.
566 label.select_all_views = Select all views
567 label.select_many_views = Select many views
568 label.edit_notes_parameter_set = Click to edit the notes for this parameter set.
569 label.open_local_file = Open local file
570 label.enable_automatically_sort_alignment_when_open_new_tree = Enable this to automatically sort<br>the alignment when you open<br> a new tree.
571 label.listen_for_selections = Listen for selections
572 label.selections_mirror_selections_made_same_sequences_other_views = When selected, selections in this view will mirror<br>selections made on the same sequences in other views.
573 label.toggle_sequence_visibility = Shift+H toggles sequence visiblity
574 label.toggle_columns_visibility = Ctrl+H toggles column visiblity.
575 label.toggles_visibility_hidden_selected_regions = H toggles visibility of hidden or selected regions
576 label.rename_tab_eXpand_reGroup= Right-click to rename tab <br> Press X to eXpand tabs, G to reGroup.
577 label.right_align_sequence_id = Right Align Sequence Id
578 label.sequence_id_tooltip = Sequence ID Tooltip
579 label.no_services = <No Services>
580 label.select_copy_raw_html = Select this if you want to copy raw html
581 label.from_url = from URL
582 label.any_trees_calculated_or_loaded_alignment_automatically_sort = When selected, any trees calculated or loaded onto the alignment will automatically sort the alignment
583 label.sort_with_new_tree = Sort With New Tree
584 label.from_textbox = from Textbox
585 label.window = Window
586 label.preferences = Preferences
588 label.fetch_sequences = Fetch Sequences
589 action.fetch_sequences = Fetch Sequences...
590 label.collect_garbage = Collect Garbage
591 label.show_memory_usage = Show Memory Usage
592 label.show_java_console = Show Java Console
593 label.show_jalview_news = Show Jalview News
594 label.take_snapshot = Take snapshot
595 label.monospaced_fonts_faster_to_render = Monospaced fonts are faster to render
596 label.anti_alias_fonts = Anti-alias Fonts (Slower to render)
597 label.monospaced_font= Monospaced
598 label.quality = Quality
599 label.maximize_window = Maximize Window
600 label.conservation = Conservation
601 label.consensus = Consensus
602 label.histogram = Histogram
604 label.non_positional_features = List Non-positional Features
605 label.database_references = List Database References
606 #label.share_selection_across_views = Share selection across views
607 #label.scroll_highlighted_regions = Scroll to highlighted regions
608 label.gap_symbol = Gap Symbol
609 label.prot_alignment_colour = Protein Alignment Colour
610 label.nuc_alignment_colour = Nucleotide Alignment Colour
611 label.address = Address
614 label.default_browser_unix_windows = Default Browser (Unix, Windows)
615 label.send_usage_statistics = Send usage statistics
616 label.check_for_questionnaires = Check for questionnaires
617 label.check_for_latest_version = Check for latest version
618 label.url_linkfrom_sequence_id = URL link from Sequence ID
619 label.no_proxy = No proxy servers
620 label.system_proxy = System proxy servers (http={0}; https={1})
621 label.use_proxy_server = Use these proxy servers
622 label.auth_required = Authentication required
623 label.username = Username
624 label.password = Password
625 label.proxy_password_required = Proxy password required
626 label.not_stored = not stored in Preferences file
627 label.rendering_style = {0} rendering style
628 label.append_start_end = Append /start-end (/15-380)
629 label.full_sequence_id = Full Sequence Id
630 label.smooth_font = Smooth Font
631 label.autocalculate_consensus = AutoCalculate Consensus
632 label.pad_gaps = Pad Gaps
633 label.pad_gaps_when_editing = Pad Gaps When Editing
634 label.automatically_set_id_width = Automatically set ID width
635 label.figure_id_column_width = Figure ID column width
636 label.use_modeller_output = Use Modeller Output
637 label.wrap_alignment = Wrap Alignment
638 label.right_align_ids = Right Align Ids
639 label.sequence_name_italics = Italic Sequence Ids
640 label.open_overview = Open Overview
641 label.default_colour_scheme_for_alignment = Default Colour Scheme for alignment
642 label.annotation_shading_default = Annotation Shading Default
643 label.default_minimum_colour_annotation_shading = Default Minimum Colour for annotation shading
644 label.default_maximum_colour_annotation_shading = Default Maximum Colour for annotation shading
645 label.visual = Visual
646 label.connections = Connections
647 label.output = Output
648 label.editing = Editing
649 label.web_services = Web Services
650 label.right_click_to_edit_currently_selected_parameter = Right click to edit currently selected parameter.
651 label.let_jmol_manage_structure_colours = Let Jmol manage structure colours
652 label.fetch_viewer_attributes = Fetch {0} attributes
653 label.fetch_viewer_attributes_tip = Copy {0} attribute to Jalview feature
654 label.marks_leaves_tree_not_associated_with_sequence = Marks leaves of tree not associated with a sequence
655 label.index_web_services_menu_by_host_site = Index web services in menu by the host site
656 label.option_want_informed_web_service_URL_cannot_be_accessed_jalview_when_starts_up = Check this option if you want to be informed<br>when a web service URL cannot be accessed by Jalview<br>when it starts up
657 label.new_service_url = New Service URL
658 label.edit_service_url = Edit Service URL
659 label.delete_service_url = Delete Service URL
660 label.details = Details
661 label.options = Options
662 label.parameters = Parameters
663 label.proxy_servers = Proxy Servers
664 label.file_output = File Output
665 label.select_input_type = Select input type
666 label.set_options_for_type = Set options for type
667 label.data_input_parameters = Data input parameters
668 label.data_returned_by_service = Data returned by service
669 label.rsbs_encoded_service = RSBS Encoded Service
670 label.parsing_errors = Parsing errors
671 label.simple_bioinformatics_rest_services = Simple Bioinformatics Rest Services
672 label.web_service_discovery_urls = Web Service Discovery URLS
673 label.input_parameter_name = Input Parameter name
674 label.short_descriptive_name_for_service = Short descriptive name for service
675 label.function_service_performs = What kind of function the service performs (e.g. alignment, analysis, search, etc).
676 label.brief_description_service = Brief description of service
677 label.url_post_data_service = URL to post data to service. Include any special parameters needed here
678 label.optional_suffix = Optional suffix added to URL when retrieving results from service
679 label.preferred_gap_character = Which gap character does this service prefer?
680 label.gap_character = Gap character
681 label.move_return_type_up_order= Move return type up order
682 label.move_return_type_down_order= Move return type down order
683 label.update_user_parameter_set = Update this existing user parameter set
684 label.delete_user_parameter_set = Delete the currently selected user parameter set
685 label.create_user_parameter_set = Create a new parameter set with the current settings.
686 label.revert_changes_user_parameter_set = Undo all changes to the current parameter set
687 label.start_job_current_settings = Start Job with current settings
688 label.cancel_job_close_dialog = Close this dialog and cancel job
689 label.input_output = Input/Output
690 label.cut_paste = Cut'n'Paste
691 label.adjusting_parameters_for_calculation = Adjusting parameters for existing Calculation
692 label.2d_rna_structure_line = 2D RNA {0} (alignment)
693 label.2d_rna_sequence_name = 2D RNA - {0}
694 label.edit_name_and_description_current_group = Edit name and description of current group
695 label.from_file = From File
696 label.enter_pdb_id = Enter PDB Id
697 label.enter_pdb_id_tip = Enter PDB Id (or pdbid:chaincode)
698 label.text_colour = Text Colour...
699 label.structure = Structure
700 label.show_pdbstruct_dialog = 3D Structure Data...
701 label.view_rna_structure = VARNA 2D Structure
702 label.create_sequence_details_report_annotation_for = Annotation for {0}
703 label.sequence_details_for = Sequence Details for {0}
704 label.sequence_name = Sequence Name
705 label.sequence_description = Sequence Description
706 label.edit_sequence_name_description = Edit Sequence Name/Description
707 label.spaces_converted_to_underscores = Spaces have been converted to underscores (_)
708 label.no_spaces_allowed_sequence_name = No spaces allowed in Sequence Name
709 label.select_outline_colour = Select Outline Colour
710 label.web_browser_not_found_unix = Unixers\: Couldn't find default web browser.\nAdd the full path to your browser in Preferences."
711 label.web_browser_not_found = Web browser not found
712 label.select_pdb_file_for = Select a PDB file for {0}
713 label.select_pae_matrix_file_for = Select a PAE matrix file for {0}
716 label.show_database_refs = Show Database Refs
717 label.show_non_positional_features = Show Non-Positional Features
718 label.save_png_image = Save As PNG Image
719 label.load_tree_for_sequence_set = Load a tree for this sequence set
720 label.export_image = Export Image
721 label.vamsas_store = VAMSAS store
722 label.translate_cDNA = Translate as cDNA
723 label.reverse = Reverse
724 label.reverse_complement = Reverse Complement
725 label.linked_view_title = Linked CDS and protein view
726 label.extract_scores = Extract Scores
727 label.get_cross_refs = Get Cross-References
728 label.sort_alignment_new_tree = Sort Alignment With New Tree
729 label.add_sequences = Add Sequences
730 label.new_window = New Window
731 label.split_window = Split Window
732 label.set_as_default = Set as Default
733 label.show_labels = Show labels
734 action.background_colour = Background Colour...
735 label.associate_nodes_with = Associate Nodes With
736 label.link_name = Link Name
737 label.pdb_file = PDB file
738 label.colour_with_jmol = Colour with Jmol
739 label.let_viewer_manage_structure_colours = Let viewer manage structure colours
740 label.colour_with_viewer = Colour in structure viewer
741 label.superpose_structures = Superpose Structures
742 error.superposition_failed = Superposition failed: {0}
743 label.insufficient_residues = Not enough aligned residues ({0}) to perform superposition
744 label.create_viewer_attributes = Write Jalview features
745 label.create_viewer_attributes_tip = Set structure residue attributes for Jalview features
746 label.attributes_set = {0} attribute values set on {1}
747 label.sort_alignment_by_tree = Sort Alignment By Tree
748 label.mark_unlinked_leaves = Mark Unlinked Leaves
749 label.associate_leaves_with = Associate Leaves With
750 label.save_colour_scheme_with_unique_name_added_to_colour_menu = Save your colour scheme with a unique name and it will be added to the Colour menu
751 label.case_sensitive = Case Sensitive
752 label.lower_case_colour = Colour All Lower Case
753 label.lower_case_tip = Chosen colour applies to all lower case symbols
754 label.index_by_host = Index by Host
755 label.index_by_type = Index by Type
756 label.enable_jabaws_services = Enable JABAWS Services
757 label.display_warnings = Display Warnings
758 label.move_url_up = Move URL Up
759 label.move_url_down = Move URL Down
760 label.add_sbrs_definition = Add a SBRS Definition
761 label.edit_sbrs_definition = Edit SBRS Definition
762 label.delete_sbrs_definition = Delete SBRS Definition
763 label.your_sequences_have_been_verified = Your sequences have been verified against known sequence databases.\n(Use Calculate | Show flanking regions to show enclosing sequence.)\nTo preserve data changes, save your alignment.\n\n
764 label.sequences_updated = Sequences updated
765 label.dbref_search_completed = DBRef search completed
766 label.fetch_all_param = Fetch all {0}
767 label.paste_new_window = Paste To New Window
768 label.settings_for_param = Settings for {0}
769 label.view_params = View {0}
770 label.aacon_calculations = AACon Calculations
771 label.aacon_settings = Change AACon Settings...
772 tooltip.aacon_calculations = When checked, AACon calculations are updated automatically.
773 tooltip.aacon_settings = Modify settings for AACon calculations.
774 label.rnalifold_calculations = RNAAliFold Prediction
775 label.rnalifold_settings = Change RNAAliFold settings...
776 tooltip.rnalifold_calculations = When checked, RNA secondary structure predictions will be calculated for the alignment, and updated when edits are made.
777 tooltip.rnalifold_settings = Modify settings for the RNAAliFold prediction. Use this to hide or show different results of the RNA calculation, and change RNA folding parameters.
778 label.all_views = All Views
779 label.align_sequences_to_existing_alignment = Align sequences to an existing alignment
780 label.realign_with_params = Realign with {0}
781 label.calcname_with_default_settings = {0} with Defaults
782 label.action_with_default_settings = {0} with default settings
783 label.edit_settings_and_run = Edit settings and run...
784 label.view_and_change_parameters_before_alignment = View and change the parameters before alignment
785 label.run_with_preset_params = Run {0} with preset
786 label.view_and_change_parameters_before_running_calculation = View and change parameters before running calculation
787 label.view_documentation = View documentation
788 label.select_return_type = Select return type
789 label.translation_of_params = Translation of {0} (Table {1})
790 label.features_for_params = Features for - {0}
791 label.annotations_for_params = Annotations for - {0}
792 label.generating_features_for_params = Generating features for - {0}
793 label.generating_annotations_for_params = Generating annotations for - {0}
794 label.varna_params = VARNA - {0}
795 label.sequence_feature_settings = Sequence Feature Settings
796 label.sequence_feature_settings_for = Sequence Feature Settings for {0}
797 label.sequence_feature_settings_for_view = Sequence Feature Settings for view "{0}"
798 label.sequence_feature_settings_for_CDS_and_Protein = Sequence Feature Settings for CDS and Protein
799 label.pairwise_aligned_sequences = Pairwise Aligned Sequences
800 label.original_data_for_params = Original Data for {0}
801 label.points_for_params = Points for {0}
802 label.transformed_points_for_params = Transformed points for {0}
803 label.variable_color_for = Variable Feature Colour for {0}
804 label.select_background_colour = Select Background Colour
805 label.invalid_font = Invalid Font
806 label.search_db_all = Search all of {0}
807 label.search_db_index = Search {0} index {1}
808 label.separate_multiple_accession_ids = Enter one or more accession IDs separated by a semi-colon ";"
809 label.separate_multiple_query_values = Enter one or more {0} separated by a semi-colon ";"
810 label.search_all = Enter one or more search values separated by a semi-colon ";" (Note: This searches the entire database)
811 label.replace_commas_semicolons = Replace commas with semi-colons
812 label.parsing_failed_syntax_errors_shown_below_param = Parsing failed. Syntax errors shown below {0}
813 label.parsing_failed_unrecoverable_exception_thrown_param = \nParsing failed. An unrecoverable exception was thrown\:\n {0}
814 label.example_query_param = Example query: {0}
815 label.enter_value_increase_conservation_visibility = Enter value to increase conservation visibility
816 label.enter_percentage_identity_above_which_colour_residues = Enter % identity above which to colour residues
817 label.wswublast_client_credits = To display sequence features an exact Uniprot id with 100% sequence identity match must be entered.\nIn order to display these features, try changing the names of your sequences to the ids suggested below.\n\nRunning WSWUBlast at EBI.\nPlease quote Pillai S., Silventoinen V., Kallio K., Senger M., Sobhany S., Tate J., Velankar S., Golovin A., Henrick K., Rice P., Stoehr P., Lopez R.\nSOAP-based services provided by the European Bioinformatics Institute.\nNucleic Acids Res. 33(1)\:W25-W28 (2005));
818 label.blasting_for_unidentified_sequence = BLASTing for unidentified sequences
819 label.select_columns_containing = Select columns containing
820 label.select_columns_not_containing = Select columns that do not contain
821 label.hide_columns_containing = Hide columns containing
822 label.hide_columns_not_containing = Hide columns that do not contain
823 option.trim_retrieved_seqs = Trim retrieved sequences
824 label.trim_retrieved_sequences = When the reference sequence is longer than the sequence that you are working with, only keep the relevant subsequences.
825 label.use_sequence_id_1 = Use $DB_ACCESSION$ or $DB_ACCESSION=/<regex>/=$
826 label.use_sequence_id_2 = to embed accession id in URL
827 label.use_sequence_id_3 = Use $SEQUENCE_ID$ similarly to embed sequence id
828 label.use_sequence_id_4 =
829 label.ws_parameters_for = Parameters for {0}
830 label.switch_server = Switch server
831 label.choose_jabaws_server = Choose a server for running this service
832 label.services_at = Services at {0}
833 label.rest_client_submit = {0} using {1}
834 label.fetch_retrieve_from =Retrieve from {0}</html>
835 label.fetch_retrieve_from_all_sources = Retrieve from all {0} sources in {1}<br>First is :{2}<html>
836 label.feature_settings_click_drag = Drag up or down to change render order.<br/>Double click to select columns containing feature.
837 label.transparency_tip = Adjust transparency to 'see through' feature colours.
838 label.opt_and_params_further_details = see further details by right-clicking
839 label.opt_and_params_show_brief_desc_image_link = <html>Click to show brief description<br><img src="{0}"/> Right click for further information.</html>
840 label.opt_and_params_show_brief_desc = <html>Click to show brief description<br></html>
841 label.adjusts_width_generated_eps_png = <html>Adjusts the width of the generated EPS or PNG file to ensure even the longest sequence ID or annotation label is displayed</html>
842 label.manually_specify_width_left_column = <html>Manually specify the width of the left hand column where sequence IDs and annotation labels will be rendered in exported alignment figures. This setting will be ignored if 'Automatically set ID width' is set</html>
843 label.job_created_when_checked = <html>When checked, a job is created for every sequence in the current selection.</html>
844 label.when_checked_job_visible_region_and_results = <html>When checked, a single job is created for the visible region and results mapped back onto their location in the alignment. Otherwise, a job would be created for every contiguous region visible in the alignment or current selection (e.g. a multiple alignment).</html>
845 label.flat_file_representation = <html>Flat file representation of this rest service using the Really Simple Bioinformatics Service formalism</html>
846 label.result_of_parsing_rsbs = <html>Results of parsing the RSBS representation</html>
847 label.user_preset = User Preset
848 label.service_preset = Service Preset
849 label.run_with_preset = Run {0} with preset
850 label.view_service_doc_url = <html>View <a href="{0}">{1}</a></html>
851 action.by_title_param = By {0}
852 label.source_from_db_source = Sources from {0}
853 label.from_msname = from {0}
854 label.superpose_with = Superpose with
855 label.scale_label_to_column = Scale Label to Column
856 label.add_new_row = Add New Row
857 label.edit_label_description = Edit Label/Description
858 label.hide_row = Hide This Row
859 label.delete_row = Delete This Row
860 label.show_all_hidden_rows = Show All Hidden Rows
861 label.export_annotation = Export Annotation
862 label.copy_consensus_sequence = Copy Consensus Sequence
865 label.rna_helix = RNA Helix
866 label.remove_annotation = Remove Annotation
867 label.colour_by = Colour by...
868 label.muscle_multiple_protein_sequence_alignment = Muscle Multiple Protein Sequence Alignment
869 label.mafft_multiple_sequence_alignment = MAFFT Multiple Sequence Alignment
870 label.clustalw_multiple_sequence_alignment = ClustalW Multiple Sequence Alignment
871 label.jnet_secondary_structure_prediction = JPred Secondary Structure Prediction
872 label.multiharmony = Multi-Harmony
873 label.unable_start_web_service_analysis = Unable to start web service analysis
874 label.job_couldnt_be_started_check_input = The Job couldn't be started. Please check your input, and the Jalview console for any warning messages.
875 label.prompt_each_time = Prompt each time
876 label.couldnt_save_project = Couldn't save project
877 label.error_whilst_saving_current_state_to = Error whilst saving current state to {0}
878 label.error_whilst_loading_project_from = Error whilst loading project from {0}
879 label.couldnt_load_project = Couldn't load project
880 label.invalid_name_preset_exists = Invalid name - preset already exists.
881 label.invalid_name = Invalid name
882 label.set_proxy_settings = Please set up your proxy settings in the 'Connections' tab of the Preferences window
883 label.proxy_authorization_failed = Proxy Authorization Failed
884 label.internal_jalview_error = Internal Jalview Error
885 label.secondary_structure_prediction_service_couldnt_be_located = The Secondary Structure Prediction Service named {0} at {1} couldn''t be located.
886 label.service_called_is_not_msa_service = The Service called \n{0}\nis not a \nMultiple Sequence Alignment Service\!
887 label.msa_service_is_unknown = The Multiple Sequence Alignment Service named {0} is unknown
888 label.service_called_is_not_seq_search_service = The Service called \n{0}\nis not a \nSequence Search Service\!
889 label.seq_search_service_is_unknown = The Sequence Search Service named {0} is unknown
890 label.feature_type = Feature Type
892 label.service_url = Service URL
893 label.copied_sequences = Copied sequences
894 label.cut_sequences = Cut Sequences
895 label.conservation_colour_increment = Conservation Colour Increment ({0})
896 label.percentage_identity_threshold = Percentage Identity Threshold ({0})
897 label.error_unsupported_owwner_user_colour_scheme = Unsupported owner for User Colour scheme dialog
898 label.save_alignment_to_file = Save Alignment to file
899 label.save_features_to_file = Save Features to File
900 label.save_annotation_to_file = Save Annotation to File
901 label.save_pdb_file = Save PDB File
902 label.save_text_to_file = Save Text to File
903 label.save_state = Save State
904 label.restore_state = Restore State
905 label.saving_jalview_project = Saving jalview project {0}
906 label.load_feature_colours = Load Feature Colours
907 label.save_feature_colours = Save Feature Colour Scheme
908 label.select_startup_file = Select startup file
909 label.select_default_browser = Select default web browser
910 label.save_tree_as_newick = Save tree as newick file
911 label.save_colour_scheme = Save colour scheme
912 label.edit_params_for = Edit parameters for {0}
913 label.choose_filename_for_param_file = Choose a filename for this parameter file
914 label.save_as_html = Save as HTML
915 label.recently_opened = Recently Opened
916 label.blasting_for_unidentified_sequence_jobs_running = BLASTing for unidentified sequences - {0} jobs running.
918 label.tree_from = Tree from {0}
919 label.webservice_job_title = {0} using {1}
920 label.select_visible_region_of = selected {0} region of {1}
921 label.visible = Visible
922 label.select_unselect_visible_regions_from = select and unselected {0} regions from {1}
923 label.visible_region_of = visible region of
924 label.webservice_job_title_on = {0} using {1} on {2}
925 label.loading_file = Loading File: {0}
926 label.edit_params = Edit {0}
927 label.as_percentage = As Percentage
928 error.not_implemented = Not implemented
929 error.no_such_method_as_clone1_for = No such method as clone1 for {0}
930 error.null_from_clone1 = Null from clone1!
931 error.not_yet_implemented = Not yet implemented
932 error.unknown_type_dna_or_pep = Unknown Type {0} - dna or pep are the only allowed values.
933 error.implementation_error_dont_know_threshold_annotationcolourgradient = Implementation error: don't know about threshold setting for current AnnotationColourGradient.
934 error.invalid_separator_parameter = Invalid separator parameter - must be non-zero length
935 error.alignment_cigararray_not_implemented = Alignment(CigarArray) not yet implemented
936 error.empty_view_cannot_be_updated = empty view cannot be updated.
937 error.mismatch_between_number_of_sequences_in_block = Mismatch between number of sequences in block {0} ({1}) and the original view ({2})
938 error.padding_not_yet_implemented = Padding not yet implemented
939 error.mismatch_between_visible_blocks_to_update_and_number_of_contigs_in_view = Mismatch between visible blocks to update and number of contigs in view (contigs=0,blocks={0})
940 error.unknown_seq_cigar_operation = Unknown SeqCigar operation {0}
941 error.implementation_bug_parse_cigar_string = Implementation bug in parseCigarString
942 error.implementation_error_invalid_operation_string = Implementation error. Invalid operation string.
943 error.invalid_range_string = Invalid range string (must be zero or positive number)
944 error.implementation_error_delete_range_out_of_bounds = Implementation Error: deleteRange out of bounds: start must be non-negative and less than end.
945 error.implementation_error = Implementation error
946 error.implementation_error_unknown_operation = Implementation Error! Unknown operation {0}
947 error.implementation_error_unexpected_null_from_get_sequence_and_deletions = Implementation Error - unexpected null from getSequenceAndDeletions
948 error.implementation_error_set_seq_null = Implementation Error - _setSeq(null,...)
949 error.implementation_error_s = Implementation Error: _s= {0}
950 error.implementation_error_seqcigar_possible = SeqCigar: Possible implementation error: sequence is longer than dataset sequence
951 error.implmentation_bug_seq_null = Implementation Bug. Null seq
952 error.implementation_bug_cigar_operation_list_range_list = Implementation Bug. Cigar Operation list!= range list
953 error.not_yet_implemented_cigar_object_from_cigar_string = NOT YET Implemented: Constructing a Cigar object from a cigar string and a gapped sequence.
954 error.implementation_bug_cigar_operation = Implementation Bug. Cigar Operation {0} {1} not one of {2}, {3}, or {4}.
955 error.implementation_error_for_new_cigar = Implementation error for new Cigar(SequenceI)
956 error.implementation_error_cigar_seq_no_operations = Implementation error: {0}th sequence Cigar has no operations.
957 error.implementation_error_no_pdbentry_from_index = Implementation error - no corresponding pdbentry (for index {0}) to add sequences mappings to
958 error.jmol_version_not_compatible_with_jalview_version = Jmol version {0} is not compatible with this version of Jalview. Report this problem at issues.jalview.org
959 error.not_implemented_remove = Remove: Not implemented
960 error.not_implemented_clone = Clone: Not implemented
961 error.call_setprogressbar_before_registering_handler = call setProgressBar before registering the progress bar's handler.
962 label.cancelled_params = Cancelled {0}
963 error.implementation_error_cannot_show_view_alignment_frame = Implementation error: cannot show a view from another alignment in an AlignFrame.
964 error.implementation_error_dont_know_about_threshold_setting = Implementation error: don't know about threshold setting for current AnnotationColourGradient.
965 label.groovy_support_failed = Jalview Groovy Support Failed
966 label.couldnt_create_groovy_shell = Couldn't create the groovy Shell. Check the error log for the details of what went wrong.
967 error.unsupported_version_calcIdparam = Unsupported Version for calcIdparam {0}
968 error.implementation_error_cant_reorder_tree = Implementation Error: Can't reorder this tree. Not DefaultMutableTreeNode.
969 error.invalid_value_for_option = Invalid value ''{0}'' for option ''{1}''
970 error.implementation_error_cannot_import_vamsas_doc = Implementation Error - cannot import existing vamsas document into an existing session, Yet!
971 label.vamsas_doc_couldnt_be_opened_as_new_session = VAMSAS Document could not be opened as a new session - please choose another
972 error.setstatus_called_non_existent_job_pane = setStatus called for non-existent job pane {0}
973 error.implementation_error_cannot_find_marshaller_for_param_set =Implementation error: Can't find a marshaller for the parameter set
974 error.implementation_error_old_jalview_object_not_bound =IMPLEMENTATION ERROR: old jalview object is not bound ! ({0})
975 error.implementation_error_vamsas_doc_class_should_bind_to_type = Implementation Error: Vamsas Document Class {0} should bind to a {1} (found a {2})
976 error.invalid_vamsas_rangetype_cannot_resolve_lists = Invalid vamsas RangeType - cannot resolve both lists of Pos and Seg from choice!
977 error.implementation_error_cannot_have_null_alignment = Implementation error: Cannot have null alignment property key
978 error.implementation_error_null_fileparse = Implementation error. Null FileParse in copy constructor
979 error.implementation_error_structure_selection_manager_null = Implementation error. Structure selection manager's context is 'null'
980 exception.ssm_context_is_null = SSM context is null
981 error.idstring_seqstrings_only_one_per_sequence = idstrings and seqstrings contain one string each per sequence
982 error.cannot_have_mixed_length_replacement_vectors = Cannot have mixed length replacement vectors. Replacement vector for {0} is {1} strings long, and have already seen a {2} length vector.
983 error.cannot_have_zero_length_vector_replacement_strings = Cannot have zero length vector of replacement strings - either 1 value or n values.
984 error.implementation_error_multiple_single_sequence_prediction_jobs_not_supported = Implementation Error! Multiple single sequence prediction jobs are not yet supported
985 error.implementation_error_invalid_msa_index_for_job =Implementation Error! Invalid msaIndex for JPredJob on parent MSA input object!
986 error.implementation_error_startjob_called = Implementation error - StartJob(JpredJob) called on {0}
987 error.multiple_jnet_subjob_merge_not_implemented = Multiple JPred subjob merging not yet implemented
988 label.job_never_ran = Job never ran - input returned to user.
989 error.implementation_error_minlen_must_be_greater_zero = Implementation error: minlen must be zero or more
990 error.implementation_error_msawbjob_called = Implementation error - StartJob(MsaWSJob) called on a WSJobInstance {0}
991 error.implementation_error_cannot_attach_ws_menu_entry = IMPLEMENTATION ERROR: cannot attach WS Menu Entry without service handle reference!
992 error.parameter_migration_not_implemented_yet = Parameter migration not implemented yet
993 error.implementation_error_valuetype_doesnt_support_jabaws_type = IMPLEMENTATION ERROR: jalview.ws.params.ValueConstrainI.ValueType does not support the JABAWS type : {0}
994 error.cannot_create_jabaws_param_set = Cannot create a JabaWSParamSet from non-JabaWS parameters
995 error.cannot_set_arguments_to_jabaws_param_set = Cannot set arguments to a JabaWSParamSet that are not JabaWS arguments
996 error.implementation_error_runner_config_not_available = Implementation Error: Runner Config not available for a JABAWS service of type {0} ({1})
997 error.implementation_error_cannot_handle_jaba_param = Implementation Error: Cannot handle Jaba parameter object {0}
998 error.implementation_error_attempt_to_delete_service_preset = Implementation error: Attempt to delete a service preset!
999 error.implementation_error_cannot_locate_oldname_presetname = Implementation error: Can''t locate either oldname ({0}) or presetName ({1}) in the datastore!"
1000 error.implementation_error_jabaws_param_set_only_handled_by = Implementation error: JabaWsParamSets can only be handled by JabaParamStore
1001 error.cannot_set_source_file_for = Cannot set source file for {0}
1002 error.mismatch_service_instance_preset = Probable mismatch between service instance and preset!
1003 error.cannot_set_params_for_ws_preset = Cannot set Parameters for a Jaba Web service's preset
1004 error.implementation_error_can_only_instantiate_jaba_param_sets = Implementation error: Can only instantiate Jaba parameter sets
1005 error.no_aacon_service_found = No AACon service found
1006 error.implementation_error_couldnt_copy_value_constraint = Implementation error: could not copy ValueConstrain!
1007 error.couldnt_encode_as_utf8 = Couldn''t encode {0} as UTF-8.
1008 error.tree_inputtype_not_yet_implemented = Tree InputType not yet implemented
1009 error.implementation_error_need_to_have_httpresponse = Implementation Error: need to have an HttpResponse to process
1010 error.dbrefsource_implementation_exception =DBRefSource Implementation Exception
1011 error.implementation_error_dbinstance_must_implement_interface = Implmentation Error - getDbInstances must be given a class that implements jalview.ws.seqfetcher.DbSourceProxy (was given{0})
1012 error.implementation_error_must_init_dbsources =Implementation error. Must initialise dbSources
1013 label.view_controller_toggled_marked = {0} {1} columns {2} features of type {3} across {4} sequence(s)
1014 label.no_highlighted_regions_marked = No highlighted regions marked
1015 label.toggled = Toggled
1016 label.marked = Marked
1017 label.containing = containing
1018 label.not_containing = not containing
1019 label.no_feature_of_type_found = No features of type {0} found
1020 label.no_feature_found_selection = No features of type {0} found in selection
1021 label.submission_params = Submission {0}
1022 label.empty_alignment_job = Empty Alignment Job
1023 label.add_new_sbrs_service = Add a new Simple Bioinformatics Rest Service
1024 label.edit_sbrs_entry = Edit Simple Bioinformatics Rest Service entry
1025 label.pca_recalculating = Recalculating PCA
1026 label.pca_calculating = Calculating PCA
1027 label.select_foreground_colour = Choose foreground colour
1028 label.select_colour_for_text = Select Colour for Text
1029 label.adjust_foreground_text_colour_threshold = Adjust Foreground Text Colour Threshold
1030 label.select_subtree_colour = Select Sub-Tree Colour
1031 label.create_new_sequence_features = Create New Sequence Feature(s)
1032 label.amend_delete_features = Amend/Delete Features for {0}
1033 exception.out_of_bounds_for_file = Out of bounds for file: i={0}, Final Buffer: i0={1} iend={2}
1034 exception.null_string_given_to_regex_search = Null String Given to Regex.search
1035 exception.null_string_like_given_to_regex_search = Null StringLike Given to Regex.search
1036 exception.null_string_given_to_regex_reverse_search = Null String Given to Regex.reverseSearch
1037 exception.null_string_like_given_to_regex_reverse_search = Null StringLike Given to Regex.reverseSearch
1038 exception.null_string_like_given_to_regex_search_from = Null String Given to Regex.searchFrom
1039 exception.null_string_like_given_to_regex_search_region = Null String Given to Regex.searchRegion
1040 exception.replace_null_regex_pointer = Replacer has null Regex pointer
1041 exception.bad_pattern_to_regex_perl_code = bad pattern to Regex.perlCode: {0}
1042 exception.no_stub_implementation_for_interface = There is no stub implementation for the interface: {0}
1043 exception.cannot_set_endpoint_address_unknown_port = Cannot set Endpoint Address for Unknown Port {0}
1044 exception.mismatched_unseen_closing_char = Mismatched (unseen) closing character {0}
1045 exception.mismatched_closing_char = Mismatched closing character {0}
1046 exception.mismatched_opening_char = Mismatched opening character {0} at {1}
1047 exception.invalid_datasource_couldnt_obtain_reader = Invalid datasource. Could not obtain Reader
1048 exception.unterminated_cigar_string = Unterminated cigar string
1049 exception.unexpected_operation_cigar_string_pos = Unexpected operation {0} in cigar string (position {1} in {2}
1050 exception.couldnt_parse_responde_from_annotated3d_server = Couldn't parse response from Annotate3d server
1051 exception.application_test_npe = Application test: throwing an NullPointerException It should arrive at the console
1052 exception.overwriting_vamsas_id_binding = Overwriting vamsas id binding
1053 exception.overwriting_jalview_id_binding = Overwriting jalview id binding
1054 exception.failed_to_resolve_gzip_stream = Failed to resolve GZIP stream
1055 exception.problem_opening_file_also_tried = Problem opening {0} (also tried {1}) : {2}
1056 exception.problem_opening_file = Problem opening {0} : {1}
1057 exception.failed_to_read_data_from_source = Failed to read data from source: {0}
1058 exception.no_init_source_stream = Unitialised Source Stream
1059 exception.invalid_source_stream = Invalid Source Stream: {0}
1060 error.implementation_error_reset_called_for_invalid_source = Implementation Error: Reset called for invalid source.
1061 exception.number_of_residues_in_query_sequence_differ_from_prediction = Number of residues in {0} supposed query sequence ({1}\n{2})\ndiffer from number of prediction sites in prediction ({3})
1062 label.mapped = mapped
1063 exception.jpredconcide_entry_has_unexpected_number_of_columns = JPredConcise: Entry ({0}) has an unexpected number of columns
1064 exception.couldnt_parse_concise_annotation_for_prediction = Couldn''t parse concise annotation for prediction profile.\n{0}
1065 exception.newfile = NewickFile\: {0}\n
1066 label.no_tree_read_in = No Tree read in
1067 exception.rnaml_couldnt_access_datasource = Couldn''t access datasource ({0})
1068 exception.ranml_couldnt_process_data = Couldn''t process data as RNAML file ({0})
1069 exception.ranml_invalid_file = Invalid RNAML file ({0})
1070 exception.ranml_problem_parsing_data = Problem parsing data as RNAML ({0})
1071 exception.pfam_no_sequences_found = No sequences found (PFAM input)
1072 exception.stockholm_invalid_format = This file is not in valid STOCKHOLM format: First line does not contain '# STOCKHOLM'
1073 exception.couldnt_parse_sequence_line = Could not parse sequence line: {0}
1074 exception.unknown_annotation_detected = Unknown annotation detected: {0} {1}
1075 exception.couldnt_store_sequence_mappings = Couldn''t store sequence mappings for {0}
1076 exception.matrix_too_many_iteration = Too many iterations in {0} (max is {1})
1077 exception.browser_not_found = Exception in finding browser: {0}
1078 exception.browser_unable_to_launch = Unable to launch browser: {0}
1079 exception.browser_unable_to_locate = Unable to locate browser: {0}
1080 exception.browser_os_not_supported = Launching browser on this operating system not supported. Use URL\n{0}
1081 exception.invocation_target_exception_creating_aedesc = InvocationTargetException while creating AEDesc: {0}
1082 exception.illegal_access_building_apple_evt= IllegalAccessException while building AppleEvent: {0}
1083 exception.unable_to_launch_url = Unable to launch URL: {0}
1084 exception.unable_to_create_internet_config = Unable to create an Internet Config instance: {0}
1085 exception.invocation_target_calling_url = InvocationTargetException while calling openURL: {0}
1086 exception.illegal_access_calling_url = IllegalAccessException while calling openURL: {0}
1087 exception.interrupted_launching_browser = InterruptedException while launching browser: {0}
1088 exception.no_pdb_records_for_chain = No PDB Records for {0} chain {1}
1089 exception.unexpected_handling_rnaml_translation_for_pdb = Unexpected exception when handling RNAML translation of PDB data
1090 exception.couldnt_recover_sequence_properties_for_alignment = Couldn't recover sequence properties for alignment
1091 exception.unknown_format_for_file = Unknown format {0} for file \: \n{1}
1092 label.remove_gaps = Remove Gaps
1093 exception.couldnt_recover_sequence_props_for_jnet_query = Couldn't recover sequence properties for JPred Query sequence!
1094 exception.server_timeout_try_later = Server timed out - try again later\n
1095 exception.web_service_returned_null_try_later= Server at {0} returned null object, it probably cannot be contacted. Try again later.
1096 exception.cannot_contact_service_endpoint_at = Cannot contact service endpoint at {0}
1097 error.implementation_error_cannot_find_service_url_in_given_set = Implementation error: Cannot find service url in the given url set!
1098 error.implementation_error_cannot_find_service_url_in_given_set_param_store = Implementation error: Cannot find service url in the given url set for this service parameter store ({0}}
1099 exception.jobsubmission_invalid_params_set = Invalid parameter set. Check Jalview implementation
1100 exception.notvaliddata_group_contains_less_than_min_seqs = Group contains less than {0} sequences.
1101 exception.outofmemory_loading_pdb_file = Out of memory loading PDB File
1102 exception.eps_method_not_supported = Method not currently supported by EpsGraphics2D version {0}
1103 exception.eps_unable_to_get_inverse_matrix = Unable to get inverse of matrix: {0}
1104 warn.job_cannot_be_cancelled_close_window = This job cannot be cancelled.\nJust close the window.
1105 warn.service_not_supported = Service not supported!
1106 warn.input_is_too_big = Input is too big!
1107 warn.invalid_job_param_set = Invalid job parameter set!
1108 warn.oneseq_msainput_selection = The current selection only contains a single sequence. Do you want to submit all sequences for alignment instead ?
1109 info.job_couldnt_be_run_server_doesnt_support_program = Job could not be run because the server doesn''t support this program.\n{0}
1110 info.job_couldnt_be_run_exceeded_hard_limit = Job could not be run because it exceeded a hard limit on the server.\n{0}
1111 info.job_couldnt_be_run_incorrect_param_setting = Job could not be run because some of the parameter settings are not supported by the server.\n{0}\nPlease check to make sure you have used the correct parameter set for this service\!\n
1112 info.no_jobs_ran = No jobs ran
1113 info.failed_to_submit_prediction = Failed to submit the prediction\:\n{0} {1}
1114 info.invalid_jnet_job_result_data ={0}\n{1}\nInvalid JPred job result data\!\n{2}
1115 info.failed_to_submit_sequences_for_alignment = Failed to submit sequences for alignment.\nIt is most likely that there is a problem with the server.\nJust close the window\n
1116 info.alignment_object_method_notes = \nAlignment Object Method Notes\n
1117 info.server_exception = \n{0} Server exception\!\n{1}
1118 info.invalid_msa_input_mininfo = Need at least two sequences with at least 3 residues each, with no hidden regions between them.
1119 info.invalid_msa_notenough = Not enough sequence data to align
1120 status.processing_commandline_args = Processing commandline arguments...
1121 status.das_features_being_retrived = DAS features being retrieved...
1122 status.searching_for_sequences_from = Searching for sequences from {0}
1123 status.finished_searching_for_sequences_from = Finished searching for sequences from {0}
1124 label.eps_file = EPS file
1125 label.png_image = PNG image
1126 status.export_complete = {0} Export completed
1127 status.fetching_pdb = Fetching PDB {0}
1128 status.refreshing_news = Refreshing news
1129 status.opening_params = Opening {0}
1130 status.fetching_sequence_queries_from = Fetching {0} sequence queries from {1}
1131 status.finshed_querying = Finished querying
1132 status.parsing_results = Parsing results.
1133 status.processing = Processing...
1134 status.refreshing_web_service_menus = Refreshing Web Service Menus
1135 status.collecting_job_results = Collecting job results.
1136 status.fetching_db_refs = Fetching db refs
1137 status.loading_cached_pdb_entries = Loading Cached PDB Entries
1138 status.searching_for_pdb_structures = Searching for PDB Structures
1139 status.searching_3d_beacons = Searching 3D Beacons
1140 status.no_structures_discovered_from_3d_beacons = No models discovered from 3D Beacons
1141 status.opening_file_for = opening file for
1142 status.colouring_structures = Colouring structures
1143 label.font_doesnt_have_letters_defined = Font doesn't have letters defined\nso cannot be used\nwith alignment data
1144 label.font_too_small = Font size is too small
1145 warn.out_of_memory_when_action = Out of memory when {0}\!\!\nSee help files for increasing Java Virtual Machine memory.
1146 warn.out_of_memory_loading_file = Out of memory loading file {0}\!\!\nSee help files for increasing Java Virtual Machine memory.
1147 label.out_of_memory = Out of memory
1148 label.invalid_id_column_width = Invalid ID Column width
1149 warn.user_defined_width_requirements = The user defined width for the\nannotation and sequence ID columns\nin exported figures must be\nat least 12 pixels wide.
1150 warn.server_didnt_pass_validation = Service did not pass validation.\nCheck the Jalview Console for more details.
1151 warn.url_must_contain = Sequence URL must contain $SEQUENCE_ID$, $DB_ACCESSION$, or a regex
1152 warn.urls_not_contacted = URLs that could not be contacted
1153 warn.urls_no_jaba = URLs without any JABA Services
1154 info.validate_jabaws_server = Validate JabaWS Server ?\n(Look in console output for results)
1155 label.test_server = Test Server?
1156 label.new_sequence_fetcher = New Sequence Fetcher
1157 label.additional_sequence_fetcher = Additional Sequence Fetcher
1158 label.select_database_retrieval_source = Select Database Retrieval Source
1159 label.overwrite_existing_file = Overwrite existing file?
1160 label.file_already_exists = File exists
1161 label.edit_jabaws_url = Edit JABAWS URL
1162 label.add_jabaws_url = Add new JABAWS URL
1163 label.news_from_jalview = News from http://www.jalview.org
1164 label.cut_paste_alignmen_file = Cut & Paste Alignment File
1165 label.enter_redundancy_threshold = Enter the redundancy threshold
1166 label.select_dark_light_set_threshold = <html><i>Select a dark and light text colour, then set the threshold to<br>switch between colours, based on background colour</i></html>
1167 label.select_feature_colour = Select Feature Colour
1168 label.delete_all = Delete all sequences
1169 warn.delete_all = <html>Deleting all sequences will close the alignment window.<br>Confirm deletion or Cancel.
1170 label.add_annotations_for = Add annotations for
1171 action.choose_annotations = Choose Annotations...
1172 label.choose_annotations = Choose Annotations
1175 label.invalid_search = Search string invalid
1176 error.invalid_regex = Invalid regular expression
1177 label.ignore_gaps_consensus = Ignore Gaps In Consensus
1178 label.show_group_histogram = Show Group Histogram
1179 label.show_group_logo = Show Group Logo
1180 label.normalise_group_logo = Normalise Group Logo
1181 label.show_histogram = Show Histogram
1182 label.show_logo = Show Logo
1183 label.normalise_logo = Normalise Logo
1184 label.no_colour_selection_in_scheme = Please make a colour selection before applying colour scheme
1185 label.no_colour_selection_warn = Error saving colour scheme
1186 label.open_split_window? = Would you like to open as a split window, with cDNA and protein linked?
1187 label.open_split_window = Open split window
1191 label.select_by_annotation = Select/Hide Columns by Annotation
1192 action.select_by_annotation = Select/Hide Columns by Annotation...
1193 label.threshold_filter = Threshold Filter
1194 label.alpha_helix = Alpha Helix
1195 label.beta_strand = Beta Strand
1197 label.select_all = Select All
1198 label.structures_filter = Structures Filter
1199 label.search_filter = Search Filter
1200 label.include_description= Include Description
1202 label.hide_insertions = Hide Insertions
1203 label.mark_as_representative = Mark as representative
1204 label.open_jabaws_web_page = Open JABAWS web page
1205 label.pdb_sequence_fetcher = PDB Sequence Fetcher
1206 label.result = result
1207 label.results = results
1208 label.structure_chooser = Structure Chooser
1209 label.invert = Invert
1210 label.select_pdb_file = Select PDB File
1211 info.select_filter_option = Select Filter Option/Manual Entry
1212 info.associate_wit_sequence = Associate with Sequence
1213 label.search_result = Search Result
1214 label.found_structures_summary = Found Structures Summary
1215 label.configure_displayed_columns = Customise Displayed Options
1216 label.start_jalview = Start Jalview
1217 label.biojs_html_export = BioJS
1218 label.scale_as_cdna = Scale protein residues to codons
1219 label.font_as_cdna = Use same font for cDNA and peptide
1220 label.scale_protein_to_cdna = Scale Protein to cDNA
1221 label.scale_protein_to_cdna_tip = Make protein residues same width as codons in split frame views
1222 info.select_annotation_row = Select Annotation Row
1223 info.enter_search_text_here = Enter Search Text Here
1224 info.enter_search_text_to_enable = Enter Search Text to Enable
1225 info.search_in_annotation_label = Search in {0} Label
1226 info.search_in_annotation_description = Search in {0} Description
1227 info.change_threshold_mode_to_enable = Change Threshold Mode to Enable
1228 label.couldnt_read_data = Couldn't read data
1229 label.embbed_biojson = Embed BioJSON to HTML export
1230 action.export_groups = Export Groups
1231 action.export_annotations = Export Annotations
1232 action.export_hidden_columns = Export Hidden Columns
1233 action.export_hidden_sequences = Export Hidden Sequences
1234 action.export_features = Export Features
1235 label.export_settings = Export Settings
1236 label.pdb_web-service_error = PDB Web-service Error
1237 label.structure_chooser_manual_association = Structure Chooser - Manual association
1238 label.structure_chooser_filter_time = Structure Chooser - Filter time ({0})
1239 label.structure_chooser_no_of_structures = Structure Chooser - {0} Found ({1})
1240 info.no_pdb_entry_found_for = No PDB entry found for {0}
1241 exception.unable_to_detect_internet_connection = Jalview is unable to detect an internet connection
1242 exception.fts_server_unreachable = Jalview is unable to reach the {0} server. \nPlease ensure that you are connected to the internet and try again.
1243 label.nw_mapping = Needleman & Wunsch Alignment
1244 label.sifts_mapping = SIFTs Mapping
1245 label.mapping_method = Sequence \u27f7 Structure mapping method
1246 status.cancelled_image_export_operation = Cancelled {0} export operation
1247 info.error_creating_file = Error creating {0} file
1248 exception.outofmemory_loading_mmcif_file = Out of memory loading mmCIF File
1249 label.run_groovy = Run Groovy Console Script
1250 label.run_groovy_tip = Run the script in the Groovy Console over this alignment
1251 label.couldnt_run_groovy_script = Failed to run Groovy script
1252 label.uniprot_sequence_fetcher = UniProt Sequence Fetcher
1253 action.next_page= >>
1254 action.prev_page= <<
1255 label.next_page_tooltip=Next Page
1256 label.prev_page_tooltip=Previous Page
1257 status.launching_3d_structure_viewer = Launching 3D Structure viewer...
1258 status.fetching_3d_structures_for_selected_entries = Fetching 3D Structures for selected entries...
1259 status.fetching_dbrefs_for_sequences_without_valid_refs = Fetching db refs for {0} sequence(s) without valid db ref required for SIFTS mapping
1260 status.fetching_3d_structures_for = Fetching 3D Structure for {0}
1261 status.obtaining_mapping_with_sifts = Obtaining mapping with SIFTS
1262 status.obtaining_mapping_with_nw_alignment = Obtaining mapping with NW alignment
1263 status.exporting_alignment_as_x_file = Exporting alignment as {0} file
1264 label.column = Column
1265 label.cant_map_cds = Unable to map CDS to protein\nCDS missing or incomplete
1266 label.operation_failed = Operation failed
1267 label.SEQUENCE_ID_no_longer_used = $SEQUENCE_ID$ is no longer used for DB accessions
1268 label.SEQUENCE_ID_for_DB_ACCESSION1 = Please review your URL links in the 'Connections' tab of the Preferences window:
1269 label.SEQUENCE_ID_for_DB_ACCESSION2 = URL links using '$SEQUENCE_ID$' for DB accessions now use '$DB_ACCESSION$'.
1270 label.do_not_display_again = Do not display this message again
1271 exception.url_cannot_have_duplicate_id = {0} cannot be used as a label for more than one line
1272 action.customfilter = Custom only
1273 action.showall = Show All
1274 label.insert = Insert:
1275 action.seq_id = $SEQUENCE_ID$
1276 action.db_acc = $DB_ACCESSION$
1277 label.primary = Double Click
1278 label.inmenu = In Menu
1280 label.database = Database
1281 label.urltooltip = Only one url, which must use a sequence id, can be selected for the 'On Click' option
1282 label.edit_sequence_url_link = Edit sequence URL link
1283 warn.name_cannot_be_duplicate = User-defined URL names must be unique and cannot be MIRIAM ids
1284 label.output_seq_details = Output Sequence Details to list all database references
1285 label.urllinks = Links
1286 action.clear_cached_items = Clear Cached Items
1287 label.togglehidden = Show hidden regions
1288 label.quality_descr = Alignment Quality based on Blosum62 scores
1289 label.conservation_descr = Conservation of total alignment less than {0}% gaps
1290 label.consensus_descr = PID
1291 label.complement_consensus_descr = PID for cDNA
1292 label.strucconsensus_descr = PID for base pairs
1293 label.occupancy_descr = Number of aligned positions
1294 label.show_experimental = Enable experimental features
1295 label.show_experimental_tip = Enable any new and currently 'experimental' features (see Latest Release Notes for details)
1296 label.warning_hidden = Warning: {0} {1} is currently hidden
1297 label.overview_settings = Overview settings
1298 label.ov_legacy_gap = Use legacy gap colouring (gaps are white)
1299 label.gap_colour = Gap colour:
1300 label.ov_show_hide_default = Show hidden regions when opening overview
1301 label.hidden_colour = Hidden colour:
1302 label.select_gap_colour = Select gap colour
1303 label.select_hidden_colour = Select hidden colour
1304 label.overview = Overview
1305 label.reset_to_defaults = Reset to defaults
1306 label.oview_calc = Recalculating overview...
1307 label.feature_details = Feature details
1308 label.matchCondition_contains = Contains
1309 label.matchCondition_notcontains = Does not contain
1310 label.matchCondition_matches = Matches
1311 label.matchCondition_notmatches = Does not match
1312 label.matchCondition_present = Is present
1313 label.matchCondition_notpresent = Is not present
1314 label.matchCondition_eq = =
1315 label.matchCondition_ne = not =
1316 label.matchCondition_lt = <
1317 label.matchCondition_le = <=
1318 label.matchCondition_gt = >
1319 label.matchCondition_ge = >=
1320 label.numeric_required = The value should be numeric
1321 label.filter = Filter
1322 label.filters = Filters
1323 label.join_conditions = Join conditions with
1324 label.delete_condition = Delete this condition
1326 label.colour_by_label = Colour by label
1327 label.variable_colour = Variable colour...
1328 label.select_colour_for = Select colour for {0}
1329 option.enable_disable_autosearch = When ticked, search is performed automatically
1330 option.autosearch = Autosearch
1331 label.retrieve_ids = Retrieve IDs
1332 label.display_settings_for = Display settings for {0} features
1333 label.simple_colour = Simple Colour
1334 label.colour_by_text = Colour by text
1335 label.graduated_colour = Graduated Colour
1336 label.by_text_of = By text of
1337 label.by_range_of = By range of
1340 label.sequence_feature_colours = Sequence Feature Colours
1341 label.best_quality = Best Quality
1342 label.best_resolution = Best Resolution
1343 label.most_protein_chain = Most Protein Chain
1344 label.most_bound_molecules = Most Bound Molecules
1345 label.most_polymer_residues = Most Polymer Residues
1346 label.cached_structures = Cached Structures
1347 label.free_text_search = Free Text Search
1348 label.annotation_name = Annotation Name
1349 label.annotation_description = Annotation Description
1350 label.edit_annotation_name_description = Edit Annotation Name/Description
1351 label.alignment = alignment
1353 label.create_image_of = Create {0} image of {1}
1354 label.click_to_edit = Click to edit, right-click for menu
1355 label.backupfiles_confirm_delete = Confirm delete
1356 label.backupfiles_confirm_delete_old_files = Delete the following older backup files? (see the Backups tab in Preferences for more options)
1357 label.backupfiles_confirm_save_file = Confirm save file
1358 label.backupfiles_confirm_save_file_backupfiles_roll_wrong = Something possibly went wrong with the backups of this file.
1359 label.backupfiles_confirm_save_new_saved_file_ok = The new saved file seems okay.
1360 label.backupfiles_confirm_save_new_saved_file_not_ok = The new saved file might not be okay.
1361 label.continue_operation = Continue operation?
1362 label.continue = Continue
1363 label.backups = Backups
1364 label.backup = Backup
1365 label.backup_files = Backup Files
1366 label.enable_backupfiles = Enable backup files
1367 label.backup_filename_strategy = Backup filename strategy
1368 label.append_to_filename = Append to filename (%n is replaced by the backup number)
1369 label.append_to_filename_tooltip = %n in the text will be replaced by the backup number. The text will appear after the filename. See the summary box above.
1370 label.index_digits = Number of digits to use for the backup number (%n)
1371 label.scheme_examples = Scheme examples
1372 label.increment_index = Increase appended text numbers - newest file has largest number.
1373 label.reverse_roll = "Roll" appended text numbers - newest backup file is always number 1.
1374 label.keep_files = Deleting old backup files
1375 label.keep_all_backup_files = Do not delete old backup files
1376 label.keep_only_this_number_of_backup_files = Keep only this number of most recent backup files
1377 label.autodelete_old_backup_files = Auto-delete old backup files:
1378 label.always_ask = Always ask
1379 label.auto_delete = Automatically delete
1380 label.filename = filename
1381 label.braced_oldest = (oldest)
1382 label.braced_newest = (most recent)
1383 label.configuration = Configuration
1384 label.configure_feature_tooltip = Click to configure variable colour or filters
1385 label.schemes = Schemes
1386 label.customise = Customise
1387 label.custom = Custom
1388 label.default = Default
1389 label.single_file = Single backup
1390 label.keep_all_versions = Keep all versions
1391 label.rolled_backups = Rolled backup files
1392 label.customise_description = Select Customise, make changes, and click on OK to save your own custom scheme
1393 label.custom_description = Your own saved scheme
1394 label.default_description = Keep the last three versions of the file
1395 label.single_file_description = Keep the last version of the file
1396 label.keep_all_versions_description = Keep all previous versions of the file
1397 label.rolled_backups_description = Keep the last nine versions of the file from _bak.1 (newest) to _bak.9 (oldest)
1398 label.cancel_changes_description = Cancel changes made to your last saved Custom scheme
1399 label.no_backup_files = NO BACKUP FILES
1400 label.include_backup_files = Include backup files
1401 label.cancel_changes = Cancel changes
1402 label.warning_confirm_change_reverse = Warning!\nIf you change the increment/decrement of the backup filename number, without changing the suffix or number of digits,\nthis may cause loss of backup files created with the previous backup filename scheme.\nAre you sure you wish to do this?
1403 label.change_increment_decrement = Change increment/decrement?
1404 label.newerdelete_replacement_line = Backup file\n''{0}''\t(modified {2}, size {4})\nis to be deleted and replaced by apparently older file\n''{1}''\t(modified {3}, size {5}).
1405 label.confirm_deletion_or_rename = Confirm deletion of ''{0}'' or rename to ''{1}''?
1406 label.newerdelete_line = Backup file\n''{0}''\t(modified {2}, size {4})\nis to be deleted but is newer than the oldest remaining backup file\n''{1}''\t(modified {3}, size {5}).
1407 label.confirm_deletion = Confirm deletion of ''{0}''?
1408 label.delete = Delete
1409 label.rename = Rename
1411 label.file_info = (modified {0}, size {1})
1412 label.annotation_name = Annotation Name
1413 label.annotation_description = Annotation Description
1414 label.edit_annotation_name_description = Edit Annotation Name/Description
1415 label.alignment = alignment
1417 label.create_image_of = Create {0} image of {1}
1418 label.click_to_edit = Click to edit, right-click for menu
1419 label.by_annotation_tooltip = Annotation Colour is configured from the main Colour menu
1420 label.show_linked_features = Show {0} features
1421 label.on_top = on top
1422 label.include_features = Include Features
1423 label.search_features = Search descriptions of displayed features
1424 label.include_linked_features = Include {0} features
1425 label.include_linked_tooltip = Include visible {0} features<br>converted to local sequence coordinates
1426 label.features_not_shown = {0} feature(s) not shown
1427 label.no_features_to_sort_by = No features to sort by
1428 label.ignore_hidden = Ignore hidden columns
1429 label.ignore_hidden_tooltip = Ignore any characters in hidden columns when matching
1430 label.log_level = Log level
1431 label.log_level_tooltip = Temporarily set the log level for this console. The log level will revert to {0} when this Java console is closed.
1433 label.copy_to_clipboard = Copy to clipboard
1434 label.copy_to_clipboard_tooltip = Copy all of the log text in this console to the system clipboard
1435 label.startup = Startup
1436 label.memory = Memory
1437 label.customise_memory_settings = Customise maximum memory settings
1438 label.memory_setting_text = New memory settings will only come into effect the next time you start Jalview
1439 label.maximum_memory_used = Maximum memory limited to both
1440 label.percent_of_physical_memory = Maximum percent of physical memory
1441 label.maximum_memory = Maximum absolute memory
1442 label.maximum_memory_tooltip = Enter memory as an integer number optionally followed by 'b', 'k', 'm', 'g' or 't'
1443 label.adjustments_for_this_computer = Adjustments for this computer
1444 label.memory_example_text = Maximum memory that would be used with these settings on this computer
1445 label.memory_example_tooltip = The memory allocated to Jalview is the smaller of the percentage of physical memory (default 90%) and the maximum absolute memory (default 32GB). If your computer's memory cannot be ascertained then the maximum absolute memory defaults to 8GB (if not customised).<br>Jalview will always try and reserve 512MB for the OS and at least 512MB for itself.
1446 warning.wrong_jvm_version_title = Wrong Java Version
1447 warning.wrong_jvm_version_message = The Java version being used (Java {0}) may lead to problems.\nThis installation of Jalview should be used with Java {1}.
1448 label.alphafold_reliability = Alphafold Reliability
1449 label.tftype_default = Default
1450 label.tftype_plddt = pLDDT
1451 label.optional = (optional)
1452 label.choose_tempfac_type = Choose Temperature Factor type
1453 label.interpret_tempfac_as = Interpret Temperature Factor as
1454 label.add_pae_matrix_file = Add PAE matrix file
1455 label.nothing_selected = Nothing selected
1456 prompt.analytics_title = Jalview Usage Statistics
1457 prompt.analytics = Do you want to help make Jalview better by enabling the collection of usage statistics with Plausible analytics?\nYou can enable or disable usage tracking in the preferences.
1458 label.working_ellipsis = Working ...
1459 action.show_groups_on_matrix = Show groups on matrix
1460 action.show_groups_on_matrix_tooltip = When enabled, clusters defined on the matrix's associated tree or below the assigned threshold are shown as different colours on the matrix annotation row
1461 action.show_tree_for_matrix = Show tree for matrix
1462 action.show_tree_for_matrix_tooltip = Opens a tree viewer to display the average distance tree for the matrix
1463 action.cluster_matrix = Cluster matrix
1464 action.clustering_matrix_for = Calculating tree for matrix {0} and clustering at {1}
1465 action.cluster_matrix_tooltip = Computes an average distance tree for the matrix and displays it
1466 label.all_known_alignment_files = All known alignment files
1467 label.command_line_arguments = Command Line Arguments
1468 warning.using_old_command_line_arguments = It looks like you are using old command line arguments. These are now deprecated and will be removed in a future release of Jalview.\nFind out about the new command line arguments at\n
1469 warning.using_mixed_command_line_arguments = Jalview cannot use both old (-arg) and new (--arg) command line arguments. Please check your command line arguments.\ne.g. {0} and {1}
1470 warning.the_following_errors = The following errors and warnings occurred whilst processing files: