schemas/jalview.xsd

   1 <?xml version="1.0" encoding="UTF-8"?>\r
   2 <xs:schema xmlns:xs="http://www.w3.org/2001/XMLSchema" \r
   3                         xmlns:vamsas="www.vamsas.org" \r
   4                         xmlns:jalview="www.jalview.org" \r
   5                         targetNamespace="www.jalview.org" \r
   6                         elementFormDefault="qualified" \r
   7                         attributeFormDefault="unqualified">\r
   8 \r
   9 <xs:import schemaLocation="vamsas.xsd" namespace="www.vamsas.org" />\r
  10 \r
  11 <xs:complexType name="JalviewModel">\r
  12 \r
  13     <xs:sequence>\r
  14 \r
  15             <xs:element name="creationDate" type="xs:dateTime"/>\r
  16 \r
  17         <xs:element name="vamsasModel" type="vamsas:VAMSAS"/>\r
  18 \r
  19         <xs:sequence>\r
  20 \r
  21             <xs:element name="JSeq" maxOccurs="unbounded">\r
  22 \r
  23                 <xs:complexType>\r
  24                     \r
  25                                         <xs:attribute name="colour" type="xs:int" use="optional"/>\r
  26                                         \r
  27                     <xs:attribute name="start" type="xs:int" use="required"/>\r
  28 \r
  29                     <xs:attribute name="end" type="xs:int" use="required"/>\r
  30 \r
  31                     <xs:attribute name="id" type="xs:int" use="required"/>\r
  32 \r
  33                 </xs:complexType>\r
  34 \r
  35             </xs:element>\r
  36 \r
  37             <xs:element name="JGroup" maxOccurs="unbounded">\r
  38 \r
  39                 <xs:complexType>\r
  40 \r
  41                     <xs:sequence minOccurs="1">\r
  42 \r
  43                         <xs:element name="seq" maxOccurs="unbounded" type="xs:int"/>\r
  44                                         \r
  45                     </xs:sequence>\r
  46 \r
  47                         <xs:attribute name="start" type="xs:int"/>\r
  48 \r
  49                         <xs:attribute name="end" type="xs:int"/>\r
  50 \r
  51                         <xs:attribute name="name" type="xs:string"/>\r
  52 \r
  53                         <xs:attribute name="colour" type="xs:string"/>\r
  54 \r
  55                                                 <xs:attribute name="consThreshold" type="xs:int"/>\r
  56 \r
  57                                                 <xs:attribute name="pidThreshold" type="xs:int"/>\r
  58 \r
  59                         <xs:attribute name="outlineColour" type="xs:int"/>\r
  60 \r
  61                         <xs:attribute name="displayBoxes" type="xs:boolean"/>\r
  62 \r
  63                         <xs:attribute name="displayText" type="xs:boolean"/>\r
  64 \r
  65                         <xs:attribute name="colourText" type="xs:boolean"/>\r
  66 \r
  67                 </xs:complexType>\r
  68 \r
  69             </xs:element>\r
  70 \r
  71             <xs:element name="Viewport" maxOccurs="unbounded">\r
  72 \r
  73                 <xs:complexType>\r
  74                                         <xs:attribute name="conservationSelected" type="xs:boolean"/>\r
  75 \r
  76                                                 <xs:attribute name="pidSelected" type="xs:boolean"/>\r
  77 \r
  78                         <xs:attribute name="bgColour" type="xs:string"/>\r
  79 \r
  80                                                 <xs:attribute name="consThreshold" type="xs:int"/>\r
  81 \r
  82                                                 <xs:attribute name="pidThreshold" type="xs:int"/>\r
  83 \r
  84                         <xs:attribute name="title" type="xs:string"/>\r
  85 \r
  86                         <xs:attribute name="showFullId" type="xs:boolean"/>\r
  87 \r
  88                         <xs:attribute name="showText" type="xs:boolean"/>\r
  89 \r
  90                         <xs:attribute name="showColourText" type="xs:boolean"/>\r
  91 \r
  92                         <xs:attribute name="showBoxes" type="xs:boolean"/>\r
  93 \r
  94                         <xs:attribute name="wrapAlignment" type="xs:boolean"/>\r
  95 \r
  96                         <xs:attribute name="renderGaps" type="xs:boolean"/>\r
  97 \r
  98                         <xs:attribute name="showSequenceFeatures" type="xs:boolean"/>\r
  99 \r
 100                                                 <xs:attribute name="showAnnotation" type="xs:boolean"/>\r
 101 \r
 102                         <xs:attribute name="showConservation" type="xs:boolean"/>\r
 103 \r
 104                         <xs:attribute name="showQuality" type="xs:boolean"/>\r
 105 \r
 106                                                 <xs:attribute name="showIdentity" type="xs:boolean"/>\r
 107 \r
 108                     <xs:attribute name="xpos" type="xs:int"/>\r
 109 \r
 110                     <xs:attribute name="ypos" type="xs:int"/>\r
 111 \r
 112                     <xs:attribute name="width" type="xs:int"/>\r
 113 \r
 114                     <xs:attribute name="height" type="xs:int"/>\r
 115 \r
 116                                     <xs:attribute name="startRes" type="xs:int"/>\r
 117                                         <xs:attribute name="startSeq" type="xs:int"/>\r
 118                                         <xs:attribute name="fontName" type="xs:string"/>\r
 119                                         <xs:attribute name="fontSize" type="xs:int"/>\r
 120                                         <xs:attribute name="fontStyle" type="xs:int"/>\r
 121                                 \r
 122 \r
 123                 </xs:complexType>\r
 124 \r
 125             </xs:element>\r
 126 \r
 127         </xs:sequence>\r
 128 \r
 129     </xs:sequence>\r
 130 \r
 131 </xs:complexType>\r
 132 \r
 133 \r
 134 \r
 135 \r
 136 </xs:schema>\r