2 * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
3 * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
11 * Jalview is distributed in the hope that it will be useful, but
12 * WITHOUT ANY WARRANTY; without even the implied warranty
13 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
14 * PURPOSE. See the GNU General Public License for more details.
16 * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
23 import javax.swing.event.*;
25 import java.awt.event.*;
28 import jalview.api.SequenceStructureBinding;
29 import jalview.bin.Cache;
30 import jalview.datamodel.*;
31 import jalview.gui.ViewSelectionMenu.ViewSetProvider;
32 import jalview.structure.*;
34 import jalview.schemes.*;
36 public class AppVarna extends JInternalFrame // implements Runnable,SequenceStructureBinding, ViewSetProvider
45 //RenderPanel renderPanel;
49 Vector atomsPicked = new Vector();
55 public void initVarna(){
56 //vab.setFinishedInit(false);
57 //renderPanel = new RenderPanel();
58 // TODO: consider waiting until the structure/view is fully loaded before
60 //this.getContentPane().add(renderPanel, java.awt.BorderLayout.CENTER);
61 //jalview.gui.Desktop.addInternalFrame(this,"test",300,300);
62 AppVarnaBinding d = new AppVarnaBinding();
63 d.setDefaultCloseOperation(JFrame.EXIT_ON_CLOSE);
68 private boolean _started = false;
76 } catch (OutOfMemoryError oomerror)
78 new OOMWarning("When trying to open the Varna viewer!", oomerror);
79 } catch (Exception ex)
81 Cache.log.error("Couldn't open Varna viewer!", ex);