src/jalview/schemes/ColourProperties.java

   1 package jalview.schemes;\r
   2 \r
   3 import java.util.*;\r
   4 \r
   5 public class ColourProperties {\r
   6 \r
   7   public static final int ZAPPO        = 0;\r
   8   public static final int TAYLOR       = 1;\r
   9   public static final int PID          = 2;\r
  10   public static final int BLOSUM62     = 3;\r
  11   public static final int SECONDARY    = 4;\r
  12   public static final int USER         = 5;\r
  13   public static final int HYDROPHOBIC  = 6;\r
  14   public static final int CONSERVATION = 7;\r
  15   public static final int HELIX        = 8;\r
  16   public static final int STRAND       = 9;\r
  17   public static final int TURN         = 10;\r
  18   public static final int BURIED       = 11;\r
  19   public static final int FEATURES     = 12;\r
  20   public static final int CLUSTALX     = 13;\r
  21 \r
  22   static ColourSchemePropertyVector colourSchemes = new ColourSchemePropertyVector();\r
  23 \r
  24   static {\r
  25     String prefix = getDefaultClassPrefix();\r
  26 \r
  27     // MC 27/03/02 These should be read in from a file\r
  28 \r
  29     colourSchemes.add(new ColourSchemeProperty("Zappo",\r
  30                                                prefix + "ZappoColourScheme",\r
  31                                                "Zappo colours"));\r
  32 \r
  33     colourSchemes.add(new ColourSchemeProperty("Taylor",\r
  34                                                prefix + "TaylorColourScheme",\r
  35                                                "Taylor colours"));\r
  36 \r
  37     colourSchemes.add(new ColourSchemeProperty("PID",\r
  38                                                prefix + "PIDColourScheme",\r
  39                                                "By PID"));\r
  40 \r
  41     colourSchemes.add(new ColourSchemeProperty("BLOSUM62",\r
  42                                                prefix + "Blosum62ColourScheme",\r
  43                                                "By BLOSUM62 Score"));\r
  44 \r
  45     colourSchemes.add(new ColourSchemeProperty("Secondary structure",\r
  46                                                prefix + "SecondaryColourScheme",\r
  47                                                "By Secondary Structure"));\r
  48 \r
  49     colourSchemes.add(new ColourSchemeProperty("User defined",\r
  50                                                prefix + "ZappoColourScheme",\r
  51                                                "User defined colours"));\r
  52 \r
  53     colourSchemes.add(new ColourSchemeProperty("Hydrophobic",\r
  54                                                prefix + "HydrophobicColourScheme",\r
  55                                                "By Hydrophobicity"));\r
  56 \r
  57    colourSchemes.add(new ColourSchemeProperty("Conservation",\r
  58                                                    prefix + "ZappoColourScheme",\r
  59                                                    null));\r
  60 \r
  61     colourSchemes.add(new ColourSchemeProperty("Helix",\r
  62                                                prefix + "HelixColourScheme",\r
  63                                                "Helix propensity"));\r
  64 \r
  65     colourSchemes.add(new ColourSchemeProperty("Strand",\r
  66                                                prefix + "StrandColourScheme",\r
  67                                                "Strand propensity"));\r
  68 \r
  69     colourSchemes.add(new ColourSchemeProperty("Turn",\r
  70                                                prefix + "TurnColourScheme",\r
  71                                                "Turn propensity"));\r
  72 \r
  73     colourSchemes.add(new ColourSchemeProperty("Buried",\r
  74                                                prefix + "BuriedColourScheme",\r
  75                                                "Buried index"));\r
  76 \r
  77     //    colourSchemes.add(new ColourSchemeProperty("Features",\r
  78     //                                               prefix + "FeatureColourScheme",\r
  79     //                                               null));\r
  80 \r
  81     colourSchemes.add(new ColourSchemeProperty("Clustalx",\r
  82                                                prefix + "ClustalXColourScheme",\r
  83                                                "ClustalX colours"));\r
  84   }\r
  85 \r
  86   static int indexOf(String scheme) {\r
  87     if (colourSchemes.contains(scheme)) {\r
  88       return colourSchemes.indexOf(scheme);\r
  89     } else {\r
  90       return -1;\r
  91     }\r
  92   }\r
  93 \r
  94   static int indexOfClass(ColourSchemeI scheme) {\r
  95     return colourSchemes.indexOfClass(scheme);\r
  96   }\r
  97 \r
  98   public static String getClassName(int index) {\r
  99     return colourSchemes.getClassName(index);\r
 100   }\r
 101 \r
 102   public static String getMenuString(int index) {\r
 103     return colourSchemes.getMenuString(index);\r
 104   }\r
 105 \r
 106   static boolean contains(String scheme) {\r
 107     return colourSchemes.contains(scheme);\r
 108   }\r
 109 \r
 110   public static Vector getColourSchemeNames() {\r
 111     return colourSchemes.getColourSchemeNames();\r
 112   }\r
 113 \r
 114   protected static String getDefaultClassPrefix() {\r
 115     return "jalview.schemes.";\r
 116   }\r
 117 }\r
 118 \r
 119 \r
 120 \r