src/jalview/ws/api/SequenceAnnotationServiceI.java

   1 package jalview.ws.api;
   2
   3 import jalview.datamodel.AlignmentAnnotation;
   4 import jalview.datamodel.SequenceI;
   5 import jalview.ws.gui.AnnotationWsJob;
   6 import jalview.ws.jws2.SeqAnnotationServiceCalcWorker;
   7 import jalview.ws.params.ArgumentI;
   8 import jalview.ws.params.WsParamSetI;
   9
  10 import java.util.List;
  11
  12 public interface SequenceAnnotationServiceI extends JalviewWebServiceI
  13 {
  14
  15
  16   /**
  17    * submit sequences to service with no parameters, or preset or parameter set.
  18    * Nb- almost the same as the 'align' method in the Msa service :)
  19    *
  20    * @param seqs
  21    * @param preset
  22    * @param paramset
  23    * @return
  24    * @throws Throwable
  25    */
  26   JobId submitToService(List<SequenceI> seqs, WsParamSetI preset,
  27           List<ArgumentI> paramset) throws Throwable;
  28
  29   /**
  30    * todo: move to SequenceAnnotationResult
  31    *
  32    * @param running
  33    * @param abstractJabaCalcWorker
  34    * @return
  35    */
  36   List<AlignmentAnnotation> getAlignmentAnnotation(AnnotationWsJob running,
  37           SeqAnnotationServiceCalcWorker abstractJabaCalcWorker) throws Throwable;
  38
  39
  40 }