JAL-4281 store/restore ID width and manual adjustment flag in Jalview projects

[jalview.git] / src / jalview / xml / binding / jalview / MatrixType.java

//
// This file was generated by the Eclipse Implementation of JAXB, v2.3.3 
// See https://eclipse-ee4j.github.io/jaxb-ri 
// Any modifications to this file will be lost upon recompilation of the source schema. 
// Generated on: 2023.09.08 at 03:55:49 PM BST 
//


package jalview.xml.binding.jalview;

import java.math.BigInteger;
import java.util.ArrayList;
import java.util.List;
import javax.xml.bind.annotation.XmlAccessType;
import javax.xml.bind.annotation.XmlAccessorType;
import javax.xml.bind.annotation.XmlAttribute;
import javax.xml.bind.annotation.XmlElement;
import javax.xml.bind.annotation.XmlType;


/**
 * <p>Java class for MatrixType complex type.
 * 
 * <p>The following schema fragment specifies the expected content contained within this class.
 * 
 * <pre>
 * <complexType name="MatrixType">
 *   <complexContent>
 *     <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
 *       <sequence>
 *         <element name="elements" type="{http://www.w3.org/2001/XMLSchema}string"/>
 *         <element name="groups" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="unbounded" minOccurs="0"/>
 *         <element name="newick" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="unbounded" minOccurs="0"/>
 *         <element name="property" type="{www.vamsas.ac.uk/jalview/version2}property" maxOccurs="unbounded" minOccurs="0"/>
 *         <element name="mapping" type="{www.vamsas.ac.uk/jalview/version2}mapListType" minOccurs="0"/>
 *       </sequence>
 *       <attribute name="type" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
 *       <attribute name="rows" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
 *       <attribute name="cols" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
 *       <attribute name="treeMethod" type="{http://www.w3.org/2001/XMLSchema}string" />
 *       <attribute name="cutHeight" type="{http://www.w3.org/2001/XMLSchema}double" />
 *       <attribute name="id" type="{http://www.w3.org/2001/XMLSchema}string" />
 *     </restriction>
 *   </complexContent>
 * </complexType>
 * </pre>
 * 
 * 
 */
@XmlAccessorType(XmlAccessType.FIELD)
@XmlType(name = "MatrixType", propOrder = {
    "elements",
    "groups",
    "newick",
    "property",
    "mapping"
})
public class MatrixType {

    @XmlElement(required = true)
    protected String elements;
    protected List<String> groups;
    protected List<String> newick;
    protected List<Property> property;
    protected MapListType mapping;
    @XmlAttribute(name = "type", required = true)
    protected String type;
    @XmlAttribute(name = "rows", required = true)
    protected BigInteger rows;
    @XmlAttribute(name = "cols", required = true)
    protected BigInteger cols;
    @XmlAttribute(name = "treeMethod")
    protected String treeMethod;
    @XmlAttribute(name = "cutHeight")
    protected Double cutHeight;
    @XmlAttribute(name = "id")
    protected String id;

    /**
     * Gets the value of the elements property.
     * 
     * @return
     *     possible object is
     *     {@link String }
     *     
     */
    public String getElements() {
        return elements;
    }

    /**
     * Sets the value of the elements property.
     * 
     * @param value
     *     allowed object is
     *     {@link String }
     *     
     */
    public void setElements(String value) {
        this.elements = value;
    }

    /**
     * Gets the value of the groups property.
     * 
     * &lt;p&gt;
     * This accessor method returns a reference to the live list,
     * not a snapshot. Therefore any modification you make to the
     * returned list will be present inside the JAXB object.
     * This is why there is not a &lt;CODE&gt;set&lt;/CODE&gt; method for the groups property.
     * 
     * &lt;p&gt;
     * For example, to add a new item, do as follows:
     * &lt;pre&gt;
     *    getGroups().add(newItem);
     * &lt;/pre&gt;
     * 
     * 
     * &lt;p&gt;
     * Objects of the following type(s) are allowed in the list
     * {@link String }
     * 
     * 
     */
    public List<String> getGroups() {
        if (groups == null) {
            groups = new ArrayList<String>();
        }
        return this.groups;
    }

    /**
     * Gets the value of the newick property.
     * 
     * &lt;p&gt;
     * This accessor method returns a reference to the live list,
     * not a snapshot. Therefore any modification you make to the
     * returned list will be present inside the JAXB object.
     * This is why there is not a &lt;CODE&gt;set&lt;/CODE&gt; method for the newick property.
     * 
     * &lt;p&gt;
     * For example, to add a new item, do as follows:
     * &lt;pre&gt;
     *    getNewick().add(newItem);
     * &lt;/pre&gt;
     * 
     * 
     * &lt;p&gt;
     * Objects of the following type(s) are allowed in the list
     * {@link String }
     * 
     * 
     */
    public List<String> getNewick() {
        if (newick == null) {
            newick = new ArrayList<String>();
        }
        return this.newick;
    }

    /**
     * Gets the value of the property property.
     * 
     * &lt;p&gt;
     * This accessor method returns a reference to the live list,
     * not a snapshot. Therefore any modification you make to the
     * returned list will be present inside the JAXB object.
     * This is why there is not a &lt;CODE&gt;set&lt;/CODE&gt; method for the property property.
     * 
     * &lt;p&gt;
     * For example, to add a new item, do as follows:
     * &lt;pre&gt;
     *    getProperty().add(newItem);
     * &lt;/pre&gt;
     * 
     * 
     * &lt;p&gt;
     * Objects of the following type(s) are allowed in the list
     * {@link Property }
     * 
     * 
     */
    public List<Property> getProperty() {
        if (property == null) {
            property = new ArrayList<Property>();
        }
        return this.property;
    }

    /**
     * Gets the value of the mapping property.
     * 
     * @return
     *     possible object is
     *     {@link MapListType }
     *     
     */
    public MapListType getMapping() {
        return mapping;
    }

    /**
     * Sets the value of the mapping property.
     * 
     * @param value
     *     allowed object is
     *     {@link MapListType }
     *     
     */
    public void setMapping(MapListType value) {
        this.mapping = value;
    }

    /**
     * Gets the value of the type property.
     * 
     * @return
     *     possible object is
     *     {@link String }
     *     
     */
    public String getType() {
        return type;
    }

    /**
     * Sets the value of the type property.
     * 
     * @param value
     *     allowed object is
     *     {@link String }
     *     
     */
    public void setType(String value) {
        this.type = value;
    }

    /**
     * Gets the value of the rows property.
     * 
     * @return
     *     possible object is
     *     {@link BigInteger }
     *     
     */
    public BigInteger getRows() {
        return rows;
    }

    /**
     * Sets the value of the rows property.
     * 
     * @param value
     *     allowed object is
     *     {@link BigInteger }
     *     
     */
    public void setRows(BigInteger value) {
        this.rows = value;
    }

    /**
     * Gets the value of the cols property.
     * 
     * @return
     *     possible object is
     *     {@link BigInteger }
     *     
     */
    public BigInteger getCols() {
        return cols;
    }

    /**
     * Sets the value of the cols property.
     * 
     * @param value
     *     allowed object is
     *     {@link BigInteger }
     *     
     */
    public void setCols(BigInteger value) {
        this.cols = value;
    }

    /**
     * Gets the value of the treeMethod property.
     * 
     * @return
     *     possible object is
     *     {@link String }
     *     
     */
    public String getTreeMethod() {
        return treeMethod;
    }

    /**
     * Sets the value of the treeMethod property.
     * 
     * @param value
     *     allowed object is
     *     {@link String }
     *     
     */
    public void setTreeMethod(String value) {
        this.treeMethod = value;
    }

    /**
     * Gets the value of the cutHeight property.
     * 
     * @return
     *     possible object is
     *     {@link Double }
     *     
     */
    public Double getCutHeight() {
        return cutHeight;
    }

    /**
     * Sets the value of the cutHeight property.
     * 
     * @param value
     *     allowed object is
     *     {@link Double }
     *     
     */
    public void setCutHeight(Double value) {
        this.cutHeight = value;
    }

    /**
     * Gets the value of the id property.
     * 
     * @return
     *     possible object is
     *     {@link String }
     *     
     */
    public String getId() {
        return id;
    }

    /**
     * Sets the value of the id property.
     * 
     * @param value
     *     allowed object is
     *     {@link String }
     *     
     */
    public void setId(String value) {
        this.id = value;
    }

}