test/jalview/datamodel/xdb/embl/EmblTestHelper.java

   1 package jalview.datamodel.xdb.embl;
   2
   3 import java.io.StringReader;
   4
   5 public class EmblTestHelper
   6 {
   7   // adapted from http://www.ebi.ac.uk/ena/data/view/x53828&display=xml
   8   private static final String TESTDATA = "<?xml version=\"1.0\" encoding=\"UTF-8\" ?>"
   9           + "<ROOT>"
  10           + "<entry accession=\"X53828\" entryVersion=\"3\" lastUpdated=\"2005-04-18\" releaseCreated=\"25\" releaseLastUpdated=\"83\""
  11           + " version=\"1\" moleculeType=\"mRNA\" topology=\"linear\" sequenceLength=\"1575\">"
  12           + "<description>Chicken LDH-A mRNA for lactate dehydrogenase A chain (EC 1.1.1.27)</description>"
  13           + "<keyword>L-lactate dehydrogenase</keyword><keyword>chutney</keyword>"
  14           + "<xref db=\"EuropePMC\" id=\"PMC1460223\" secondaryId=\"9649548\" />"
  15           + "<xref db=\"MD5\" id=\"d3b68\" />"
  16           + "<feature name=\"CDS\" location=\"60..1058\">"
  17           + "<xref db=\"GOA\" id=\"P00340\" secondaryId=\"2.1\" /><xref db=\"InterPro\" id=\"IPR001236\" />"
  18           + "<qualifier name=\"note\"><value>L-lactate dehydrogenase A-chain</value><value>pickle</value></qualifier>"
  19           + "<qualifier name=\"translation\"><value>MSLKDHLIHN</value><evidence>Keith</evidence></qualifier>"
  20           + "</feature>" + "<sequence>GTGACG</sequence></entry></ROOT>";
  21
  22   static EmblFile getEmblFile()
  23   {
  24     return EmblFile.getEmblFile(new StringReader(TESTDATA));
  25   }
  26 }