test/jalview/gui/AlignmentPanelTest.java

   1 /*
   2  * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
   3  * Copyright (C) $$Year-Rel$$ The Jalview Authors
   4  *
   5  * This file is part of Jalview.
   6  *
   7  * Jalview is free software: you can redistribute it and/or
   8  * modify it under the terms of the GNU General Public License
   9  * as published by the Free Software Foundation, either version 3
  10  * of the License, or (at your option) any later version.
  11  *
  12  * Jalview is distributed in the hope that it will be useful, but
  13  * WITHOUT ANY WARRANTY; without even the implied warranty
  14  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
  15  * PURPOSE.  See the GNU General Public License for more details.
  16  *
  17  * You should have received a copy of the GNU General Public License
  18  * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
  19  * The Jalview Authors are detailed in the 'AUTHORS' file.
  20  */
  21 package jalview.gui;
  22
  23 import static org.testng.Assert.assertEquals;
  24
  25 import jalview.bin.Jalview;
  26 import jalview.datamodel.Alignment;
  27 import jalview.datamodel.Sequence;
  28 import jalview.datamodel.SequenceI;
  29
  30 import org.testng.annotations.AfterMethod;
  31 import org.testng.annotations.BeforeClass;
  32 import org.testng.annotations.Test;
  33
  34 public class AlignmentPanelTest
  35 {
  36   SequenceI seq1 = new Sequence(
  37           "Seq1",
  38           "ABCABCABCABCABCABCABCABCBACBACBACBACABCABCABCABCABCABCABCABCBACBACBACBACABCABCABCABCABCABCABCABCBACBACBACBAC");
  39
  40   SequenceI seq2 = new Sequence(
  41           "Seq2",
  42           "ABCABCABCABCABCABCABCABCBACBACBACBACABCABCABCABCABCABCABCABCBACBACBACBACABCABCABCABCABCABCABCABCBACBACBACBAC");
  43
  44   SequenceI seq3 = new Sequence(
  45           "Seq3",
  46           "ABCABCABCABCABCABCABCABCBACBACBACBACABCABCABCABCABCABCABCABCBACBACBACBACABCABCABCABCABCABCABCABCBACBACBACBAC");
  47
  48   SequenceI seq4 = new Sequence(
  49           "Seq4",
  50           "ABCABCABCABCABCABCABCABCBACBACBACBACABCABCABCABCABCABCABCABCBACBACBACBACABCABCABCABCABCABCABCABCBACBACBACBAC");
  51
  52   SequenceI seq5 = new Sequence(
  53           "Seq5",
  54           "ABCABCABCABCABCABCABCABCBACBACBACBACABCABCABCABCABCABCABCABCBACBACBACBACABCABCABCABCABCABCABCABCBACBACBACBAC");
  55
  56   SequenceI seq6 = new Sequence(
  57           "Seq6",
  58           "ABCABCABCABCABCABCABCABCBACBACBACBACABCABCABCABCABCABCABCABCBACBACBACBACABCABCABCABCABCABCABCABCBACBACBACBAC");
  59
  60   SequenceI seq7 = new Sequence(
  61           "Seq7",
  62           "ABCABCABCABCABCABCABCABCBACBACBACBACABCABCABCABCABCABCABCABCBACBACBACBACABCABCABCABCABCABCABCABCBACBACBACBAC");
  63
  64   SequenceI seq8 = new Sequence(
  65           "Seq8",
  66           "ABCABCABCABCABCABCABCABCBACBACBACBACABCABCABCABCABCABCABCABCBACBACBACBACABCABCABCABCABCABCABCABCBACBACBACBAC");
  67
  68   SequenceI seq9 = new Sequence(
  69           "Seq9",
  70           "ABCABCABCABCABCABCABCABCBACBACBACBACABCABCABCABCABCABCABCABCBACBACBACBACABCABCABCABCABCABCABCABCBACBACBACBAC");
  71
  72   SequenceI seq10 = new Sequence(
  73           "Seq10",
  74           "ABCABCABCABCABCABCABCABCBACBACBACBACABCABCABCABCABCABCABCABCBACBACBACBACABCABCABCABCABCABCABCABCBACBACBACBAC");
  75
  76   SequenceI seq11 = new Sequence(
  77           "Seq11",
  78           "ABCABCABCABCABCABCABCABCBACBACBACBACABCABCABCABCABCABCABCABCBACBACBACBACABCABCABCABCABCABCABCABCBACBACBACBAC");
  79
  80   SequenceI seq12 = new Sequence(
  81           "Seq12",
  82           "ABCABCABCABCABCABCABCABCBACBACBACBACABCABCABCABCABCABCABCABCBACBACBACBACABCABCABCABCABCABCABCABCBACBACBACBAC");
  83
  84   SequenceI seq13 = new Sequence(
  85           "Seq13",
  86           "ABCABCABCABCABCABCABCABCBACBACBACBACABCABCABCABCABCABCABCABCBACBACBACBACABCABCABCABCABCABCABCABCBACBACBACBAC");
  87
  88   SequenceI seq14 = new Sequence(
  89           "Seq14",
  90           "ABCABCABCABCABCABCABCABCBACBACBACBACABCABCABCABCABCABCABCABCBACBACBACBACABCABCABCABCABCABCABCABCBACBACBACBAC");
  91
  92   SequenceI seq15 = new Sequence(
  93           "Seq15",
  94           "ABCABCABCABCABCABCABCABCBACBACBACBACABCABCABCABCABCABCABCABCBACBACBACBACABCABCABCABCABCABCABCABCBACBACBACBAC");
  95
  96   SequenceI seq16 = new Sequence(
  97           "Seq16",
  98           "ABCABCABCABCABCABCABCABCBACBACBACBACABCABCABCABCABCABCABCABCBACBACBACBACABCABCABCABCABCABCABCABCBACBACBACBAC");
  99
 100   SequenceI seq17 = new Sequence(
 101           "Seq17",
 102           "ABCABCABCABCABCABCABCABCBACBACBACBACABCABCABCABCABCABCABCABCBACBACBACBACABCABCABCABCABCABCABCABCBACBACBACBAC");
 103
 104   SequenceI seq18 = new Sequence(
 105           "Seq18",
 106           "ABCABCABCABCABCABCABCABCBACBACBACBACABCABCABCABCABCABCABCABCBACBACBACBACABCABCABCABCABCABCABCABCBACBACBACBAC");
 107
 108   SequenceI seq19 = new Sequence(
 109           "Seq19",
 110           "ABCABCABCABCABCABCABCABCBACBACBACBACABCABCABCABCABCABCABCABCBACBACBACBACABCABCABCABCABCABCABCABCBACBACBACBAC");
 111
 112   SequenceI seq20 = new Sequence(
 113           "Seq20",
 114           "ABCABCABCABCABCABCABCABCBACBACBACBACABCABCABCABCABCABCABCABCBACBACBACBACABCABCABCABCABCABCABCABCBACBACBACBAC");
 115
 116   SequenceI seq21 = new Sequence(
 117           "Seq21",
 118           "ABCABCABCABCABCABCABCABCBACBACBACBACABCABCABCABCABCABCABCABCBACBACBACBACABCABCABCABCABCABCABCABCBACBACBACBAC");
 119
 120   SequenceI seq22 = new Sequence(
 121           "Seq22",
 122           "ABCABCABCABCABCABCABCABCBACBACBACBACABCABCABCABCABCABCABCABCBACBACBACBACABCABCABCABCABCABCABCABCBACBACBACBAC");
 123
 124   SequenceI seq23 = new Sequence(
 125           "Seq23",
 126           "ABCABCABCABCABCABCABCABCBACBACBACBACABCABCABCABCABCABCABCABCBACBACBACBACABCABCABCABCABCABCABCABCBACBACBACBAC");
 127
 128   @BeforeClass(alwaysRun = true)
 129   public void setUp()
 130   {
 131     JvOptionPane.setInteractiveMode(false);
 132     JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION);
 133
 134     Jalview.main(new String[] { "-nonews", "-props",
 135         "test/jalview/testProps.jvprops" });
 136   }
 137
 138   @AfterMethod(alwaysRun = true)
 139   public void tearDown()
 140   {
 141     Desktop.instance.closeAll_actionPerformed(null);
 142   }
 143
 144   /**
 145    * Test side effect that end residue is set correctly by setScrollValues, with
 146    * or without hidden columns
 147    */
 148   @Test(groups = "Functional")
 149   public void TestSetScrollValues()
 150   {
 151     SequenceI[] seqs = new SequenceI[] { seq1, seq2, seq3, seq4, seq5,
 152         seq6, seq7, seq8, seq9, seq10, seq11, seq12, seq13, seq14, seq15,
 153         seq16, seq17, seq18, seq19, seq20, seq21, seq22, seq23 };
 154     Alignment al = new Alignment(seqs);
 155     al.setDataset(null);
 156     AlignViewport av = new AlignViewport(al);
 157
 158     AlignFrame alignFrame = new AlignFrame(al, 700, 500);
 159     AlignmentPanel ap = new AlignmentPanel(alignFrame, av);
 160
 161     int oldres = av.getEndRes();
 162     ap.setScrollValues(-1, 5);
 163
 164     // setting -ve x value does not change residue
 165     assertEquals(av.getEndRes(), oldres);
 166
 167     ap.setScrollValues(0, 5);
 168
 169     // setting 0 as x value does not change residue
 170     assertEquals(av.getEndRes(), oldres);
 171
 172     ap.setScrollValues(5, 5);
 173     // setting x value to 20 extends endRes by 20px converted to residues
 174     assertEquals(av.getEndRes(), oldres + 5);
 175
 176
 177   }
 178 }