test/jalview/io/PfamFormatInputTest.java

   1 package jalview.io;
   2
   3 import jalview.datamodel.AlignmentI;
   4
   5 import java.io.IOException;
   6
   7 import org.testng.Assert;
   8 import org.testng.annotations.Test;
   9
  10 public class PfamFormatInputTest
  11 {
  12   @Test
  13   public void testPfamFormatNoLimits() throws IOException
  14   {
  15     AlignmentI al = new jalview.io.AppletFormatAdapter().readFile(
  16             "ASEQ\t...--FFAFAFF--", AppletFormatAdapter.PASTE, "PFAM");
  17     Assert.assertEquals(1, al.getHeight(), "Wrong number of sequences");
  18     Assert.assertTrue(al.hasValidSequence(),
  19             "Didn't extract limits from PFAM ID");
  20   }
  21
  22   @Test
  23   public void testPfamFormatValidLimits() throws IOException
  24   {
  25     AlignmentI al = new jalview.io.AppletFormatAdapter()
  26             .readFile("ASEQ/15-25\t...--FFAFAFF--",
  27                     AppletFormatAdapter.PASTE, "PFAM");
  28     Assert.assertEquals(1, al.getHeight(), "Wrong number of sequences");
  29     Assert.assertTrue(al.hasValidSequence(),
  30             "Didn't extract limits from PFAM ID");
  31   }
  32 }