utils/checkstyle/import-control.xml

   1 <?xml version="1.0" encoding="UTF-8"?>
   2
   3 <!DOCTYPE import-control PUBLIC
   4     "-//Puppy Crawl//DTD Import Control 1.1//EN"
   5     "http://www.puppycrawl.com/dtds/import_control_1_1.dtd">
   6
   7     <!--
   8         see http://checkstyle.sourceforge.net/config_imports.html#ImportControl
   9         allow/disallow rules propagate to sub-packages
  10         unless local-only="true" is specified
  11
  12         note this can handle only one top-level package, so ImportControl is
  13         suppressed for MCview and vamsas in checkstyle-suppress.xml
  14         (all rules are suppressed for com/ext/org/uk)
  15     -->
  16    <import-control pkg="jalview">
  17
  18                 <allow pkg="java"/>
  19                 <allow pkg="jalview"/>
  20                 <allow pkg="com.stevesoft.pat"/>
  21
  22                 <subpackage name="appletgui">
  23                 <disallow pkg="javax.swing"/>
  24                 <disallow pkg="jalview.gui"/>
  25                 <disallow pkg="jalview.ws"/>
  26                 <allow pkg="org.jmol"/>
  27                 <allow pkg="javajs.awt" class="jalview.appletgui.AppletJmolBinding"/>
  28             </subpackage>
  29
  30                 <subpackage name="bin">
  31                 <allow pkg="groovy"/>
  32                 <allow pkg="org.apache.log4j" class="jalview.bin.Cache"/>
  33                 <allow pkg="javax.swing" class="jalview.bin.Jalview"/>
  34                 <allow pkg="netscape.javascript" class="jalview.bin.JalviewLite"/>
  35             </subpackage>
  36
  37                 <subpackage name="datamodel">
  38                 <disallow pkg="jalview.gui"/>
  39                 <allow pkg="fr.orsay.lri.varna"/>
  40                 <allow pkg="htsjdk"/>
  41                         <subpackage name="xdb.embl">
  42                         <allow pkg="org.exolab.castor"/>
  43                     </subpackage>
  44             </subpackage>
  45
  46                 <subpackage name="ext">
  47                         <subpackage name="ensembl">
  48                         <allow pkg="javax.ws"/>
  49                         <allow pkg="org.json"/>
  50                         </subpackage>
  51                         <subpackage name="htsjdk">
  52                         <allow pkg="htsjdk"/>
  53                         </subpackage>
  54                         <subpackage name="jmol">
  55                         <allow pkg="MCview"/>
  56                         <allow pkg="org.jmol"/>
  57                         </subpackage>
  58                         <subpackage name="paradise">
  59                         <allow pkg="org.apache"/>
  60                         <allow pkg="org.json"/>
  61                         </subpackage>
  62                         <subpackage name="rbvi">
  63                         <allow pkg="ext.edu.ucsf"/>
  64                         <allow pkg="javax.servlet"/>
  65                         </subpackage>
  66                         <subpackage name="so">
  67                         <allow pkg="org.biojava"/>
  68                         </subpackage>
  69                         <subpackage name="varna">
  70                         <allow pkg="fr.orsay"/>
  71                         </subpackage>
  72             </subpackage>
  73
  74                 <subpackage name="fts">
  75                 <allow pkg="javax.swing"/>
  76                 <allow pkg="javax.ws"/>
  77                 <allow pkg="org.json"/>
  78                 <allow pkg="com.sun.jersey"/>
  79             </subpackage>
  80
  81                 <subpackage name="gui">
  82                 <allow pkg="javax.swing"/>
  83                 <allow pkg="javax.help"/>
  84                 <allow pkg="javax.imageio"/>
  85                 <allow pkg="ext.edu.ucsf"/>
  86                 <allow pkg="net.miginfocom"/>
  87                 <allow pkg="org.jibble"/>
  88                 <allow pkg="org.jmol"/>
  89                 <allow pkg="org.openscience"/>
  90                 <allow pkg="org.exolab.castor" class="jalview.gui.Jalview2XML"/>
  91                 <allow pkg="org.robsite" class="jalview.gui.BlogReader"/>
  92                 <allow pkg="org.apache.log4j" class="jalview.gui.Console"/>
  93                 <allow pkg="org.apache.log4j" class="jalview.gui.JalviewAppender"/>
  94                 <allow pkg="org.biodas" class="jalview.gui.DasSourceBrowser"/>
  95                 <allow pkg="compbio.metadata" class="jalview.gui.WsJobParameters"/>
  96                 <allow pkg="fr.orsay.lri.varna" class="jalview.gui.AppVarna"/>
  97                 <allow pkg="fr.orsay.lri.varna" class="jalview.gui.AppVarnaBinding"/>
  98                 <allow pkg="org.stackoverflowusers.file" class="jalview.gui.Desktop"/>
  99                 <allow pkg="uk.ac.vamsas" class="jalview.gui.VamsasApplication"/>
 100             </subpackage>
 101
 102                 <subpackage name="jbgui">
 103                 <allow pkg="javax.swing"/>
 104                 <allow pkg="net.miginfocom"/>
 105             </subpackage>
 106
 107                 <subpackage name="httpserver">
 108                 <allow pkg="javax.servlet"/>
 109                 <allow pkg="org.eclipse.jetty"/>
 110             </subpackage>
 111
 112                 <subpackage name="io">
 113                 <allow pkg="javax.swing"/>
 114                 <allow pkg="org.jfree"/>
 115                 <allow pkg="org.json"/>
 116                 <allow pkg="org.jsoup"/>
 117                 <allow pkg="uk.ac.ebi"/>
 118                 <allow pkg="uk.ac.vamsas"/>
 119                 <allow pkg="fr.orsay.lri.varna"/>
 120                 <allow pkg="MCview"/>
 121 <<<<<<< HEAD
 122                         <subpackage name="vcf">
 123                         <allow pkg="htsjdk\.*" regex="true"/>
 124                         </subpackage>
 125 =======
 126                 <allow pkg="htsjdk.samtools"/>
 127 >>>>>>> origin/features/JAL-2909_bamImport2_11
 128                 </subpackage>
 129
 130                 <subpackage name="javascript">
 131                 <allow pkg="netscape.javascript"/>
 132             </subpackage>
 133
 134                 <subpackage name="rest">
 135                 <allow pkg="javax.servlet"/>
 136                 </subpackage>
 137
 138                 <subpackage name="schemes">
 139                         <allow pkg="org.exolab.castor" class="jalview.schemes.ColourSchemeLoader"/>
 140                 </subpackage>
 141
 142                 <subpackage name="structure">
 143                 <allow pkg="MCview"/>
 144                 </subpackage>
 145
 146                 <subpackage name="urls">
 147                         <allow pkg="javax.swing" class="jalview.urls.UrlLinkTableModel"/>
 148                         <allow pkg="org.json"/>
 149                 </subpackage>
 150
 151                 <subpackage name="util">
 152                 <allow pkg="javax.swing"/>
 153                 <allow pkg="javax.imageio"/>
 154                 <allow pkg="org.jfree"/>
 155                 <allow pkg="org.jibble"/>
 156                 </subpackage>
 157
 158                 <subpackage name="ws">
 159                 <allow pkg="javax.swing"/>
 160                 <allow pkg="javax.xml"/>
 161                 <allow pkg="ext.vamsas"/>
 162                 <allow pkg="compbio"/>
 163                 <allow pkg="MCview"/>
 164                 <allow pkg="org.apache.http"/>
 165                 <allow pkg="org.apache.james"/>
 166                 <allow pkg="org.apache.axis"/>
 167                 <allow pkg="org.biodas.jdas"/>
 168                 <allow pkg="org.exolab.castor"/>
 169                 <allow pkg="uk.ac.ebi"/>
 170                 <allow pkg="vamsas.objects"/>
 171                 </subpackage>
 172
 173    </import-control>