JAL-3066 update classlist for jalviewjs

[jalview.git] / utils / jalviewjs / classlists / jalview.txt

intervalstore/api/IntervalI.js
intervalstore/api/IntervalStoreI.js
intervalstore/impl/BinarySearcher.js
intervalstore/impl/IntervalStore.js
intervalstore/impl/NCList.js
intervalstore/impl/NCNode.js
jalview/analysis/AAFrequency.js
jalview/analysis/AlignSeq.js
jalview/analysis/AlignmentAnnotationUtils.js
jalview/analysis/AlignmentSorter.js
jalview/analysis/AlignmentUtils.js
jalview/analysis/AnnotationSorter.js
jalview/analysis/AverageDistanceTree.js
jalview/analysis/Conservation.js
jalview/analysis/CrossRef.js
jalview/analysis/GeneticCodeI.js
jalview/analysis/GeneticCodes.js
jalview/analysis/NJTree.js
jalview/analysis/PCA.js
jalview/analysis/SeqsetUtils.js
jalview/analysis/SequenceIdMatcher.js
jalview/analysis/TreeBuilder.js
jalview/analysis/TreeModel.js
jalview/analysis/scoremodels/DistanceScoreModel.js
jalview/analysis/scoremodels/FeatureDistanceModel.js
jalview/analysis/scoremodels/PIDModel.js
jalview/analysis/scoremodels/ScoreMatrix.js
jalview/analysis/scoremodels/ScoreModels.js
jalview/analysis/scoremodels/SimilarityParams.js
jalview/analysis/scoremodels/SimilarityScoreModel.js
jalview/api/AlignCalcManagerI2.js
jalview/api/AlignCalcWorkerI.js
jalview/api/AlignViewControllerGuiI.js
jalview/api/AlignViewControllerI.js
jalview/api/AlignViewportI.js
jalview/api/AlignmentColsCollectionI.js
jalview/api/AlignmentRowsCollectionI.js
jalview/api/AlignmentViewPanel.js
jalview/api/BuildDetailsI.js
jalview/api/DBRefEntryI.js
jalview/api/FeatureColourI.js
jalview/api/FeatureRenderer.js
jalview/api/FeatureSettingsControllerI.js
jalview/api/FeaturesDisplayedI.js
jalview/api/JalviewJSApi.js
jalview/api/OOMHandlerI.js
jalview/api/PollableAlignCalcWorkerI.js
jalview/api/RendererListenerI.js
jalview/api/RotatableCanvasI.js
jalview/api/SequenceRenderer.js
jalview/api/SequenceStructureBinding.js
jalview/api/StructureSelectionManagerProvider.js
jalview/api/ViewStyleI.js
jalview/api/analysis/PairwiseScoreModelI.js
jalview/api/analysis/ScoreModelI.js
jalview/api/analysis/SimilarityParamsI.js
jalview/api/structures/JalviewStructureDisplayI.js
jalview/bin/AppletParams.js
jalview/bin/ApplicationSingletonProvider.js
jalview/bin/ArgsParser.js
jalview/bin/BuildDetails.js
jalview/bin/Cache.js
jalview/bin/Jalview.js
jalview/bin/JalviewJS2.js
jalview/bin/JalviewJSApp.js
jalview/bin/JalviewTaskbar.js
jalview/commands/CommandI.js
jalview/commands/OrderCommand.js
jalview/controller/AlignViewController.js
jalview/controller/FeatureSettingsControllerGuiI.js
jalview/datamodel/ASequence.js
jalview/datamodel/ASequenceI.js
jalview/datamodel/Alignment.js
jalview/datamodel/AlignmentAnnotation.js
jalview/datamodel/AlignmentI.js
jalview/datamodel/AlignmentView.js
jalview/datamodel/AllColsCollection.js
jalview/datamodel/AllColsIterator.js
jalview/datamodel/AllRowsCollection.js
jalview/datamodel/AllRowsIterator.js
jalview/datamodel/AnnotatedCollectionI.js
jalview/datamodel/Annotation.js
jalview/datamodel/BinaryNode.js
jalview/datamodel/CigarArray.js
jalview/datamodel/CigarBase.js
jalview/datamodel/CigarSimple.js
jalview/datamodel/ColumnSelection.js
jalview/datamodel/ContiguousI.js
jalview/datamodel/DBRefEntry.js
jalview/datamodel/DBRefSource.js
jalview/datamodel/HiddenColumns.js
jalview/datamodel/HiddenColumnsCursor.js
jalview/datamodel/HiddenCursorPosition.js
jalview/datamodel/HiddenSequences.js
jalview/datamodel/Mapping.js
jalview/datamodel/PDBEntry.js
jalview/datamodel/Point.js
jalview/datamodel/Profile.js
jalview/datamodel/ProfileI.js
jalview/datamodel/Profiles.js
jalview/datamodel/ProfilesI.js
jalview/datamodel/Range.js
jalview/datamodel/RangeElementsIterator.js
jalview/datamodel/RangeIterator.js
jalview/datamodel/ResidueCount.js
jalview/datamodel/SearchResultMatchI.js
jalview/datamodel/SearchResults.js
jalview/datamodel/SearchResultsI.js
jalview/datamodel/SeqCigar.js
jalview/datamodel/Sequence.js
jalview/datamodel/SequenceCollectionI.js
jalview/datamodel/SequenceCursor.js
jalview/datamodel/SequenceFeature.js
jalview/datamodel/SequenceGroup.js
jalview/datamodel/SequenceI.js
jalview/datamodel/SequenceNode.js
jalview/datamodel/SequencePoint.js
jalview/datamodel/StartRegionIterator.js
jalview/datamodel/StructureViewerModel.js
jalview/datamodel/VisibleColsCollection.js
jalview/datamodel/VisibleContigsIterator.js
jalview/datamodel/VisibleRowsCollection.js
jalview/datamodel/VisibleRowsIterator.js
jalview/datamodel/features/FeatureAttributes.js
jalview/datamodel/features/FeatureLocationI.js
jalview/datamodel/features/FeatureMatcherSet.js
jalview/datamodel/features/FeatureMatcherSetI.js
jalview/datamodel/features/FeatureStore.js
jalview/datamodel/features/SequenceFeatures.js
jalview/datamodel/features/SequenceFeaturesI.js
jalview/ext/ensembl/EnsemblData.js
jalview/ext/ensembl/EnsemblGene.js
jalview/ext/ensembl/EnsemblRestClient.js
jalview/ext/ensembl/EnsemblSeqProxy.js
jalview/ext/ensembl/EnsemblSequenceFetcher.js
jalview/ext/jmol/JalviewJmolBinding.js
jalview/ext/jmol/JmolCommands.js
jalview/ext/jmol/JmolParser.js
jalview/fts/api/FTSData.js
jalview/fts/api/FTSDataColumnI.js
jalview/fts/api/FTSRestClientI.js
jalview/fts/core/DecimalFormatTableCellRenderer.js
jalview/fts/core/FTSDataColumnPreferences.js
jalview/fts/core/FTSRestClient.js
jalview/fts/core/FTSRestRequest.js
jalview/fts/core/FTSRestResponse.js
jalview/fts/service/pdb/PDBFTSRestClient.js
jalview/gui/APQHandlers.js
jalview/gui/AlignFrame.js
jalview/gui/AlignViewport.js
jalview/gui/AlignmentPanel.js
jalview/gui/AnnotationExporter.js
jalview/gui/AnnotationLabels.js
jalview/gui/AnnotationPanel.js
jalview/gui/AppJmol.js
jalview/gui/AppJmolBinding.js
jalview/gui/CalculationChooser.js
jalview/gui/ColourMenuHelper.js
jalview/gui/ComboBoxTooltipRenderer.js
jalview/gui/CutAndPasteTransfer.js
jalview/gui/Desktop.js
jalview/gui/FeatureRenderer.js
jalview/gui/FeatureSettings.js
jalview/gui/IProgressIndicator.js
jalview/gui/IProgressIndicatorHandler.js
jalview/gui/IdCanvas.js
jalview/gui/IdPanel.js
jalview/gui/IdwidthAdjuster.js
jalview/gui/JalviewChangeSupport.js
jalview/gui/JvOptionPane.js
jalview/gui/JvSwingUtils.js
jalview/gui/OverviewCanvas.js
jalview/gui/OverviewPanel.js
jalview/gui/PCAPanel.js
jalview/gui/PaintRefresher.js
jalview/gui/PairwiseAlignPanel.js
jalview/gui/PopupMenu.js
jalview/gui/Preferences.js
jalview/gui/ProgressBar.js
jalview/gui/ProgressPanel.js
jalview/gui/RotatableCanvas.js
jalview/gui/ScalePanel.js
jalview/gui/SeqCanvas.js
jalview/gui/SeqPanel.js
jalview/gui/SequenceFetcher.js
jalview/gui/SequenceRenderer.js
jalview/gui/SliderPanel.js
jalview/gui/StructureChooser.js
jalview/gui/StructureViewer.js
jalview/gui/StructureViewerBase.js
jalview/gui/TextColourChooser.js
jalview/gui/TreeCanvas.js
jalview/gui/TreePanel.js
jalview/gui/UserDefinedColours.js
jalview/gui/ViewSelectionMenu.js
jalview/gui/WebserviceInfo.js
jalview/hmmer/HmmerCommand.js
jalview/io/AlignFile.js
jalview/io/AlignmentFileReaderI.js
jalview/io/AlignmentFileWriterI.js
jalview/io/AnnotationFile.js
jalview/io/AppletFormatAdapter.js
jalview/io/DataSourceType.js
jalview/io/FastaFile.js
jalview/io/FileFormat.js
jalview/io/FileFormatException.js
jalview/io/FileFormatI.js
jalview/io/FileFormats.js
jalview/io/FileLoader.js
jalview/io/FileParse.js
jalview/io/FormatAdapter.js
jalview/io/IdentifyFile.js
jalview/io/NewickFile.js
jalview/io/PIRFile.js
jalview/io/ScoreMatrixFile.js
jalview/io/SequenceAnnotationReport.js
jalview/io/StructureFile.js
jalview/javascript/json/JSON.js
jalview/javascript/log4j/ConsoleAppender.js
jalview/javascript/log4j/Layout.js
jalview/javascript/log4j/Level.js
jalview/javascript/log4j/Logger.js
jalview/javascript/log4j/Priority.js
jalview/javascript/log4j/SimpleLayout.js
jalview/javascript/log4j/spi/OptionHandler.js
jalview/javascript/web/Client.js
jalview/javascript/web/ClientResponse.js
jalview/javascript/web/WebResource.js
jalview/jbgui/GAlignFrame.js
jalview/jbgui/GAlignmentPanel.js
jalview/jbgui/GCutAndPasteTransfer.js
jalview/jbgui/GDesktop.js
jalview/jbgui/GPCAPanel.js
jalview/jbgui/GPairwiseAlignPanel.js
jalview/jbgui/GPreferences.js
jalview/jbgui/GSliderPanel.js
jalview/jbgui/GStructureChooser.js
jalview/jbgui/GStructureViewer.js
jalview/jbgui/GTreePanel.js
jalview/jbgui/GUserDefinedColours.js
jalview/jbgui/GWebserviceInfo.js
jalview/math/Matrix.js
jalview/math/MatrixI.js
jalview/project/Jalview2XML.js
jalview/renderer/AnnotationRenderer.js
jalview/renderer/AwtRenderPanelI.js
jalview/renderer/OverviewRenderer.js
jalview/renderer/OverviewResColourFinder.js
jalview/renderer/ResidueColourFinder.js
jalview/renderer/ResidueShader.js
jalview/renderer/ResidueShaderI.js
jalview/renderer/ScaleRenderer.js
jalview/renderer/seqfeatures/FeatureColourFinder.js
jalview/renderer/seqfeatures/FeatureRenderer.js
jalview/schemes/Blosum62ColourScheme.js
jalview/schemes/BuriedColourScheme.js
jalview/schemes/ClustalxColourScheme.js
jalview/schemes/ColourSchemeI.js
jalview/schemes/ColourSchemeProperty.js
jalview/schemes/ColourSchemes.js
jalview/schemes/Consensus.js
jalview/schemes/FeatureColour.js
jalview/schemes/HMMMatchScoreColourScheme.js
jalview/schemes/HelixColourScheme.js
jalview/schemes/HmmerColourScheme.js
jalview/schemes/HmmerGlobalBackground.js
jalview/schemes/HmmerLocalBackground.js
jalview/schemes/HydrophobicColourScheme.js
jalview/schemes/IdColourScheme.js
jalview/schemes/JalviewColourScheme.js
jalview/schemes/NucleotideColourScheme.js
jalview/schemes/PIDColourScheme.js
jalview/schemes/PurinePyrimidineColourScheme.js
jalview/schemes/RNAHelicesColour.js
jalview/schemes/ResidueColourScheme.js
jalview/schemes/ResidueProperties.js
jalview/schemes/ScoreColourScheme.js
jalview/schemes/StrandColourScheme.js
jalview/schemes/TCoffeeColourScheme.js
jalview/schemes/TaylorColourScheme.js
jalview/schemes/TurnColourScheme.js
jalview/schemes/UserColourScheme.js
jalview/schemes/ZappoColourScheme.js
jalview/structure/AtomSpec.js
jalview/structure/CommandListener.js
jalview/structure/SelectionListener.js
jalview/structure/SelectionSource.js
jalview/structure/SequenceListener.js
jalview/structure/StructureImportSettings.js
jalview/structure/StructureListener.js
jalview/structure/StructureMapping.js
jalview/structure/StructureMappingcommandSet.js
jalview/structure/StructureSelectionManager.js
jalview/structure/VamsasSource.js
jalview/structures/models/AAStructureBindingModel.js
jalview/structures/models/SequenceStructureBindingModel.js
jalview/urls/CustomUrlProvider.js
jalview/urls/IdOrgSettings.js
jalview/urls/IdentifiersUrlProvider.js
jalview/urls/UrlLinkDisplay.js
jalview/urls/UrlLinkTableModel.js
jalview/urls/UrlProvider.js
jalview/urls/UrlProviderImpl.js
jalview/urls/api/UrlProviderFactoryI.js
jalview/urls/api/UrlProviderI.js
jalview/urls/desktop/DesktopUrlProviderFactory.js
jalview/util/CaseInsensitiveString.js
jalview/util/ColorUtils.js
jalview/util/Comparison.js
jalview/util/DBRefUtils.js
jalview/util/FileUtils.js
jalview/util/Format.js
jalview/util/LinkedIdentityHashSet.js
jalview/util/MapList.js
jalview/util/MessageManager.js
jalview/util/Platform.js
jalview/util/QuickSort.js
jalview/util/ShiftList.js
jalview/util/StringUtils.js
jalview/util/UrlLink.js
jalview/util/dialogrunner/DialogRunnerI.js
jalview/util/jarInputStreamProvider.js
jalview/viewmodel/AlignmentViewport.js
jalview/viewmodel/OverviewDimensions.js
jalview/viewmodel/OverviewDimensionsHideHidden.js
jalview/viewmodel/OverviewDimensionsShowHidden.js
jalview/viewmodel/PCAModel.js
jalview/viewmodel/ViewportListenerI.js
jalview/viewmodel/ViewportProperties.js
jalview/viewmodel/ViewportRanges.js
jalview/viewmodel/seqfeatures/FeatureRendererModel.js
jalview/viewmodel/seqfeatures/FeatureRendererSettings.js
jalview/viewmodel/seqfeatures/FeaturesDisplayed.js
jalview/viewmodel/styles/ViewStyle.js
jalview/workers/AlignCalcManager2.js
jalview/workers/AlignCalcWorker.js
jalview/workers/ComplementConsensusThread.js
jalview/workers/ConsensusThread.js
jalview/workers/ConservationThread.js
jalview/workers/InformationThread.js
jalview/workers/StrucConsensusThread.js
jalview/ws/AWSThread.js
jalview/ws/AWsJob.js
jalview/ws/DBRefFetcher.js
jalview/ws/JobStateSummary.js
jalview/ws/SequenceFetcher.js
jalview/ws/ServiceChangeListener.js
jalview/ws/WSClient.js
jalview/ws/WSClientI.js
jalview/ws/WSDiscovererI.js
jalview/ws/WSMenuEntryProviderI.js
jalview/ws/api/CancellableI.js
jalview/ws/api/JPredServiceI.js
jalview/ws/api/JalviewServiceEndpointProviderI.js
jalview/ws/api/JalviewWebServiceI.js
jalview/ws/api/JobId.js
jalview/ws/api/MsaI.js
jalview/ws/api/MsaResultI.js
jalview/ws/api/MultipleSequenceAlignmentI.js
jalview/ws/api/SequenceAnnotationServiceI.js
jalview/ws/api/ServiceWithParameters.js
jalview/ws/api/UIinfo.js
jalview/ws/api/WSAnnotationCalcManagerI.js
jalview/ws/dbsources/EbiFileRetrievedProxy.js
jalview/ws/dbsources/EmblCdsSource.js
jalview/ws/dbsources/EmblSource.js
jalview/ws/dbsources/EmblXmlSource.js
jalview/ws/dbsources/Pdb.js
jalview/ws/dbsources/Pfam.js
jalview/ws/dbsources/PfamFull.js
jalview/ws/dbsources/PfamSeed.js
jalview/ws/dbsources/Rfam.js
jalview/ws/dbsources/RfamSeed.js
jalview/ws/dbsources/Uniprot.js
jalview/ws/dbsources/Xfam.js
jalview/ws/ebi/EBIFetchClient.js
jalview/ws/gui/AnnotationWsJob.js
jalview/ws/gui/MsaWSJob.js
jalview/ws/gui/MsaWSThread.js
jalview/ws/gui/WsJob.js
jalview/ws/jws2/JPredClient.js
jalview/ws/jws2/Jws2Client.js
jalview/ws/jws2/Jws2ClientFactory.js
jalview/ws/jws2/Jws2Discoverer.js
jalview/ws/jws2/MsaWSClient.js
jalview/ws/jws2/PreferredServiceChangeListener.js
jalview/ws/jws2/PreferredServiceRegistry.js
jalview/ws/jws2/SeqAnnotationServiceCalcWorker.js
jalview/ws/jws2/SequenceAnnotationWSClient.js
jalview/ws/jws2/dm/AAConSettings.js
jalview/ws/params/ArgumentI.js
jalview/ws/params/AutoCalcSetting.js
jalview/ws/params/OptionI.js
jalview/ws/params/ParamDatastoreI.js
jalview/ws/params/ParameterI.js
jalview/ws/params/WsParamSetI.js
jalview/ws/params/simple/BooleanOption.js
jalview/ws/params/simple/DoubleParameter.js
jalview/ws/params/simple/IntegerParameter.js
jalview/ws/params/simple/Option.js
jalview/ws/params/simple/StringParameter.js
jalview/ws/seqfetcher/ASequenceFetcher.js
jalview/ws/seqfetcher/DbSourceProxy.js
jalview/ws/seqfetcher/DbSourceProxyImpl.js
jalview/ws/sifts/SiftsSettings.js
jalview/ws/slivkaws/RNAalifoldServiceInstance.js
jalview/ws/slivkaws/SlivkaAnnotationServiceInstance.js
jalview/ws/slivkaws/SlivkaDatastore.js
jalview/ws/slivkaws/SlivkaJPredServiceInstance.js
jalview/ws/slivkaws/SlivkaMsaServiceInstance.js
jalview/ws/slivkaws/SlivkaParamSet.js
jalview/ws/slivkaws/SlivkaWSDiscoverer.js
jalview/ws/slivkaws/SlivkaWSInstance.js
jalview/ws/uimodel/AlignAnalysisUIText.js
jalview/ws/utils/UrlDownloadClient.js
jalview/xml/binding/jalview/Annotation.js
jalview/xml/binding/jalview/AnnotationElement.js
jalview/xml/binding/jalview/Feature.js
jalview/xml/binding/jalview/JalviewModel.js
jalview/xml/binding/jalview/Pdbentry.js
jalview/xml/binding/jalview/Sequence.js
jalview/xml/binding/jalview/SequenceSet.js
jalview/xml/binding/jalview/SequenceType.js
jalview/xml/binding/jalview/VAMSAS.js
jalview/xml/binding/jalview/WebServiceParameterSet.js
jalview/xml/binding/uniprot/CitationType.js
jalview/xml/binding/uniprot/CofactorType.js
jalview/xml/binding/uniprot/CommentType.js
jalview/xml/binding/uniprot/DbReferenceType.js
jalview/xml/binding/uniprot/Entry.js
jalview/xml/binding/uniprot/EvidenceType.js
jalview/xml/binding/uniprot/EvidencedStringType.js
jalview/xml/binding/uniprot/FeatureType.js
jalview/xml/binding/uniprot/GeneNameType.js
jalview/xml/binding/uniprot/GeneType.js
jalview/xml/binding/uniprot/InteractantType.js
jalview/xml/binding/uniprot/KeywordType.js
jalview/xml/binding/uniprot/LocationType.js
jalview/xml/binding/uniprot/NameListType.js
jalview/xml/binding/uniprot/OrganismNameType.js
jalview/xml/binding/uniprot/OrganismType.js
jalview/xml/binding/uniprot/PersonType.js
jalview/xml/binding/uniprot/PositionType.js
jalview/xml/binding/uniprot/PropertyType.js
jalview/xml/binding/uniprot/ProteinExistenceType.js
jalview/xml/binding/uniprot/ProteinType.js
jalview/xml/binding/uniprot/ReferenceType.js
jalview/xml/binding/uniprot/SequenceType.js
jalview/xml/binding/uniprot/SourceDataType.js
jalview/xml/binding/uniprot/SourceType.js
jalview/xml/binding/uniprot/SubcellularLocationType.js
jalview/xml/binding/uniprot/Uniprot.js
java/applet/AppletContext.js
java/applet/AppletStub.js
java/applet/JSApplet.js
java/awt/AWTEvent.js
java/awt/AWTEventMulticaster.js
java/awt/AWTKeyStroke.js
java/awt/ActiveEvent.js
java/awt/Adjustable.js
java/awt/AlphaComposite.js
java/awt/BasicStroke.js
java/awt/BorderLayout.js
java/awt/CardLayout.js
java/awt/Color.js
java/awt/Component.js
java/awt/ComponentOrientation.js
java/awt/Composite.js
java/awt/Container.js
java/awt/ContainerOrderFocusTraversalPolicy.js
java/awt/Cursor.js
java/awt/DefaultFocusTraversalPolicy.js
java/awt/DefaultKeyboardFocusManager.js
java/awt/Desktop.js
java/awt/Dialog.js
java/awt/Dimension.js
java/awt/EventDispatchThread.js
java/awt/EventFilter.js
java/awt/EventQueue.js
java/awt/EventQueueItem.js
java/awt/FlowLayout.js
java/awt/FocusTraversalPolicy.js
java/awt/Font.js
java/awt/FontMetrics.js
java/awt/GraphicsCallback.js
java/awt/GraphicsConfiguration.js
java/awt/GraphicsDevice.js
java/awt/GraphicsEnvironment.js
java/awt/GridBagConstraints.js
java/awt/GridBagLayout.js
java/awt/GridBagLayoutInfo.js
java/awt/GridLayout.js
java/awt/Image.js
java/awt/ImageMediaEntry.js
java/awt/Insets.js
java/awt/ItemSelectable.js
java/awt/JSComponent.js
java/awt/JSDialog.js
java/awt/JSFrame.js
java/awt/JSPanel.js
java/awt/KeyEventDispatcher.js
java/awt/KeyEventPostProcessor.js
java/awt/KeyboardFocusManager.js
java/awt/LayoutManager.js
java/awt/LayoutManager2.js
java/awt/LightweightDispatcher.js
java/awt/MediaEntry.js
java/awt/MediaTracker.js
java/awt/Paint.js
java/awt/Point.js
java/awt/Queue.js
java/awt/Rectangle.js
java/awt/RenderingHints.js
java/awt/SentEvent.js
java/awt/Shape.js
java/awt/Stroke.js
java/awt/Taskbar.js
java/awt/TextComponent.js
java/awt/Toolkit.js
java/awt/Transparency.js
java/awt/VKCollection.js
java/awt/Window.js
java/awt/color/ColorSpace.js
java/awt/datatransfer/ClipboardOwner.js
java/awt/datatransfer/FlavorMap.js
java/awt/datatransfer/FlavorTable.js
java/awt/datatransfer/SystemFlavorMap.js
java/awt/dnd/DropTarget.js
java/awt/dnd/DropTargetContext.js
java/awt/dnd/DropTargetListener.js
java/awt/dnd/peer/DropTargetPeer.js
java/awt/event/AWTEventListener.js
java/awt/event/ActionEvent.js
java/awt/event/ActionListener.js
java/awt/event/AdjustmentEvent.js
java/awt/event/AdjustmentListener.js
java/awt/event/ComponentAdapter.js
java/awt/event/ComponentEvent.js
java/awt/event/ComponentListener.js
java/awt/event/ContainerEvent.js
java/awt/event/ContainerListener.js
java/awt/event/FocusAdapter.js
java/awt/event/FocusEvent.js
java/awt/event/FocusListener.js
java/awt/event/HierarchyBoundsListener.js
java/awt/event/HierarchyEvent.js
java/awt/event/HierarchyListener.js
java/awt/event/InputEvent.js
java/awt/event/InputMethodListener.js
java/awt/event/InvocationEvent.js
java/awt/event/ItemEvent.js
java/awt/event/ItemListener.js
java/awt/event/KeyAdapter.js
java/awt/event/KeyEvent.js
java/awt/event/KeyListener.js
java/awt/event/MouseAdapter.js
java/awt/event/MouseEvent.js
java/awt/event/MouseListener.js
java/awt/event/MouseMotionAdapter.js
java/awt/event/MouseMotionListener.js
java/awt/event/MouseWheelEvent.js
java/awt/event/MouseWheelListener.js
java/awt/event/TextListener.js
java/awt/event/WindowAdapter.js
java/awt/event/WindowEvent.js
java/awt/event/WindowFocusListener.js
java/awt/event/WindowListener.js
java/awt/event/WindowStateListener.js
java/awt/font/FontRenderContext.js
java/awt/font/TextAttribute.js
java/awt/geom/AffineTransform.js
java/awt/geom/Dimension2D.js
java/awt/geom/Path2D.js
java/awt/geom/PathIterator.js
java/awt/geom/Point2D.js
java/awt/geom/RectIterator.js
java/awt/geom/Rectangle2D.js
java/awt/geom/RectangularShape.js
java/awt/image/BufferedImage.js
java/awt/image/ColorModel.js
java/awt/image/DataBuffer.js
java/awt/image/DataBufferInt.js
java/awt/image/DirectColorModel.js
java/awt/image/ImageConsumer.js
java/awt/image/ImageObserver.js
java/awt/image/ImageProducer.js
java/awt/image/PackedColorModel.js
java/awt/image/PixelGrabber.js
java/awt/image/Raster.js
java/awt/image/RenderedImage.js
java/awt/image/SampleModel.js
java/awt/image/SinglePixelPackedSampleModel.js
java/awt/image/WritableRaster.js
java/awt/peer/ComponentPeer.js
java/awt/peer/ContainerPeer.js
java/awt/peer/DialogPeer.js
java/awt/peer/FramePeer.js
java/awt/peer/KeyboardFocusManagerPeer.js
java/awt/peer/LightweightPeer.js
java/awt/peer/WindowPeer.js
java/awt/print/Printable.js
java/beans/ChangeListenerMap.js
java/beans/PropertyChangeEvent.js
java/beans/PropertyChangeListener.js
java/beans/PropertyChangeSupport.js
java/io/BufferedInputStream.js
java/io/BufferedReader.js
java/io/BufferedWriter.js
java/io/ByteArrayInputStream.js
java/io/ByteArrayOutputStream.js
java/io/Closeable.js
java/io/DataInput.js
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java/io/File.js
java/io/FileDescriptor.js
java/io/FileInputStream.js
java/io/FileOutputStream.js
java/io/FileReader.js
java/io/FileSystem.js
java/io/FilenameFilter.js
java/io/FilterInputStream.js
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java/io/InputStream.js
java/io/InputStreamReader.js
java/io/ObjectStreamField.js
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java/io/OutputStreamWriter.js
java/io/PrintStream.js
java/io/PrintWriter.js
java/io/Reader.js
java/io/StringReader.js
java/io/StringWriter.js
java/io/Writer.js
java/lang/AbstractStringBuilder.js
java/lang/AutoCloseable.js
java/lang/Class.js
java/lang/Enum.js
java/lang/Iterable.js
java/lang/Readable.js
java/lang/Runtime.js
java/lang/RuntimePermission.js
java/lang/Shutdown.js
java/lang/StringBuffer.js
java/lang/StringBuilder.js
java/lang/Thread.js
java/lang/ThreadGroup.js
java/lang/ThreadLocal.js
java/lang/ref/Reference.js
java/lang/ref/ReferenceQueue.js
java/lang/ref/WeakReference.js
java/lang/reflect/AccessibleObject.js
java/lang/reflect/AnnotatedElement.js
java/lang/reflect/Constructor.js
java/lang/reflect/Field.js
java/lang/reflect/Method.js
java/math/BigDecimal.js
java/math/BigInteger.js
java/math/MathContext.js
java/math/RoundingMode.js
java/net/ContentHandler.js
java/net/HttpURLConnection.js
java/net/URI.js
java/net/URL.js
java/net/URLConnection.js
java/net/URLDecoder.js
java/net/URLStreamHandler.js
java/net/URLStreamHandlerFactory.js
java/nio/Bits.js
java/nio/Buffer.js
java/nio/ByteBuffer.js
java/nio/ByteOrder.js
java/nio/CharBuffer.js
java/nio/HeapByteBuffer.js
java/nio/HeapCharBuffer.js
java/nio/charset/Charset.js
java/nio/charset/CharsetDecoder.js
java/nio/charset/CoderResult.js
java/nio/charset/CodingErrorAction.js
java/security/AccessController.js
java/security/BasicPermission.js
java/security/Guard.js
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java/security/PrivilegedAction.js
java/security/PrivilegedExceptionAction.js
java/text/AttributedCharacterIterator.js
java/text/CharacterIterator.js
java/text/DateFormat.js
java/text/DateFormatSymbols.js
java/text/DecimalFormat.js
java/text/DecimalFormatSymbols.js
java/text/DigitList.js
java/text/FieldPosition.js
java/text/Format.js
java/text/MessageFormat.js
java/text/NumberFormat.js
java/text/ParsePosition.js
java/text/SimpleDateFormat.js
java/text/spi/BreakIteratorProvider.js
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java/util/AbstractSequentialList.js
java/util/AbstractSet.js
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java/util/BitSet.js
java/util/Calendar.js
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java/util/ComparableTimSort.js
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java/util/Dictionary.js
java/util/DualPivotQuicksort.js
java/util/EnumMap.js
java/util/Enumeration.js
java/util/EventListener.js
java/util/EventObject.js
java/util/Formatter.js
java/util/GregorianCalendar.js
java/util/HashMap.js
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java/util/IdentityHashMap.js
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java/util/Iterator.js
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java/util/Locale.js
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java/util/Objects.js
java/util/Optional.js
java/util/PriorityQueue.js
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java/util/Random.js
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java/util/ServiceLoader.js
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java/util/Stack.js
java/util/StringTokenizer.js
java/util/TimSort.js
java/util/TimeZone.js
java/util/TreeMap.js
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java/util/Vector.js
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java/util/concurrent/DelayQueue.js
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java/util/concurrent/TimeUnit.js
java/util/concurrent/atomic/AtomicInteger.js
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java/util/concurrent/locks/AbstractOwnableSynchronizer.js
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java/util/concurrent/locks/Condition.js
java/util/concurrent/locks/Lock.js
java/util/concurrent/locks/ReadWriteLock.js
java/util/concurrent/locks/ReentrantLock.js
java/util/concurrent/locks/ReentrantReadWriteLock.js
java/util/function/Consumer.js
java/util/function/Predicate.js
java/util/function/Supplier.js
java/util/jar/JarEntry.js
java/util/jar/JarInputStream.js
java/util/regex/MatchResult.js
java/util/regex/Matcher.js
java/util/regex/Pattern.js
java/util/spi/CalendarDataProvider.js
java/util/spi/CurrencyNameProvider.js
java/util/spi/LocaleNameProvider.js
java/util/spi/LocaleServiceProvider.js
java/util/spi/TimeZoneNameProvider.js
java/util/stream/AbstractPipeline.js
java/util/stream/BaseStream.js
java/util/stream/MatchOps.js
java/util/stream/PipelineHelper.js
java/util/stream/ReferencePipeline.js
java/util/stream/Sink.js
java/util/stream/Stream.js
java/util/stream/StreamOpFlag.js
java/util/stream/StreamShape.js
java/util/stream/StreamSupport.js
java/util/stream/TerminalOp.js
java/util/zip/CRC32.js
java/util/zip/Inflater.js
java/util/zip/InflaterInputStream.js
java/util/zip/ZipConstants.js
java/util/zip/ZipEntry.js
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javajs/api/BytePoster.js
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javajs/api/GenericCifDataParser.js
javajs/api/GenericLineReader.js
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javajs/api/Interface.js
javajs/api/JSONEncodable.js
javajs/async/SwingJSUtils.js
javajs/http/HttpClient.js
javajs/http/HttpClientFactory.js
javajs/http/SimpleHttpClient.js
javajs/util/A4.js
javajs/util/AU.js
javajs/util/AjaxURLConnection.js
javajs/util/AjaxURLStreamHandler.js
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javajs/util/BS.js
javajs/util/Base64.js
javajs/util/CU.js
javajs/util/CifDataParser.js
javajs/util/DF.js
javajs/util/Eigen.js
javajs/util/Encoding.js
javajs/util/JSThread.js
javajs/util/LimitedLineReader.js
javajs/util/Lst.js
javajs/util/M3.js
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javajs/util/Quat.js
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javajs/util/V3.js
javax/net/ssl/HttpsURLConnection.js
javax/swing/AbstractAction.js
javax/swing/AbstractButton.js
javax/swing/AbstractCellEditor.js
javax/swing/AbstractListModel.js
javax/swing/AbstractSpinnerModel.js
javax/swing/Action.js
javax/swing/ActionMap.js
javax/swing/AncestorNotifier.js
javax/swing/ArrayTable.js
javax/swing/Autoscroller.js
javax/swing/BorderFactory.js
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javax/swing/BoxLayout.js
javax/swing/ButtonGroup.js
javax/swing/ButtonModel.js
javax/swing/CellEditor.js
javax/swing/CellRendererPane.js
javax/swing/ClientPropertyKey.js
javax/swing/ComboBoxEditor.js
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javax/swing/ComponentInputMap.js
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javax/swing/DefaultButtonModel.js
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javax/swing/FocusManager.js
javax/swing/Icon.js
javax/swing/ImageIcon.js
javax/swing/InputMap.js
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javax/swing/JApplet.js
javax/swing/JButton.js
javax/swing/JCheckBox.js
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javax/swing/JColorChooser.js
javax/swing/JComboBox.js
javax/swing/JComponent.js
javax/swing/JDesktopPane.js
javax/swing/JDialog.js
javax/swing/JEditorPane.js
javax/swing/JFormattedTextField.js
javax/swing/JFrame.js
javax/swing/JInternalFrame.js
javax/swing/JLabel.js
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javax/swing/JList.js
javax/swing/JMenu.js
javax/swing/JMenuBar.js
javax/swing/JMenuItem.js
javax/swing/JOptionPane.js
javax/swing/JPanel.js
javax/swing/JPopupMenu.js
javax/swing/JProgressBar.js
javax/swing/JRadioButton.js
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javax/swing/JRootPane.js
javax/swing/JScrollBar.js
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javax/swing/JSeparator.js
javax/swing/JSlider.js
javax/swing/JSpinner.js
javax/swing/JSplitPane.js
javax/swing/JTabbedPane.js
javax/swing/JTable.js
javax/swing/JTextArea.js
javax/swing/JTextField.js
javax/swing/JTextPane.js
javax/swing/JToggleButton.js
javax/swing/JToolTip.js
javax/swing/JViewport.js
javax/swing/JWindow.js
javax/swing/KeyStroke.js
javax/swing/KeyboardManager.js
javax/swing/LayoutComparator.js
javax/swing/LayoutFocusTraversalPolicy.js
javax/swing/ListCellRenderer.js
javax/swing/ListModel.js
javax/swing/ListSelectionModel.js
javax/swing/LookAndFeel.js
javax/swing/MenuElement.js
javax/swing/MenuSelectionManager.js
javax/swing/MutableComboBoxModel.js
javax/swing/Popup.js
javax/swing/PopupFactory.js
javax/swing/RepaintManager.js
javax/swing/RootPaneContainer.js
javax/swing/RowSorter.js
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javax/swing/Scrollable.js
javax/swing/SingleSelectionModel.js
javax/swing/SizeRequirements.js
javax/swing/SortOrder.js
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javax/swing/SpinnerModel.js
javax/swing/SpinnerNumberModel.js
javax/swing/SwingConstants.js
javax/swing/SwingContainerOrderFocusTraversalPolicy.js
javax/swing/SwingDefaultFocusTraversalPolicy.js
javax/swing/SwingPaintEventDispatcher.js
javax/swing/SwingUtilities.js
javax/swing/Timer.js
javax/swing/ToolTipManager.js
javax/swing/TransferHandler.js
javax/swing/UIDefaults.js
javax/swing/UIManager.js
javax/swing/ViewportLayout.js
javax/swing/WindowConstants.js
javax/swing/border/AbstractBorder.js
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javax/swing/border/Border.js
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javax/swing/border/EtchedBorder.js
javax/swing/border/LineBorder.js
javax/swing/border/MatteBorder.js
javax/swing/border/TitledBorder.js
javax/swing/colorchooser/AbstractColorChooserPanel.js
javax/swing/colorchooser/CenterLayout.js
javax/swing/colorchooser/ColorChooserComponentFactory.js
javax/swing/colorchooser/ColorSelectionModel.js
javax/swing/colorchooser/DefaultColorSelectionModel.js
javax/swing/colorchooser/DefaultPreviewPanel.js
javax/swing/colorchooser/DefaultRGBChooserPanel.js
javax/swing/colorchooser/DefaultSwatchChooserPanel.js
javax/swing/colorchooser/MainSwatchPanel.js
javax/swing/colorchooser/RecentSwatchPanel.js
javax/swing/colorchooser/SmartGridLayout.js
javax/swing/colorchooser/SwatchPanel.js
javax/swing/event/AncestorEvent.js
javax/swing/event/AncestorListener.js
javax/swing/event/CaretEvent.js
javax/swing/event/CaretListener.js
javax/swing/event/CellEditorListener.js
javax/swing/event/ChangeEvent.js
javax/swing/event/ChangeListener.js
javax/swing/event/DocumentEvent.js
javax/swing/event/DocumentListener.js
javax/swing/event/EventListenerList.js
javax/swing/event/HyperlinkListener.js
javax/swing/event/InternalFrameAdapter.js
javax/swing/event/InternalFrameEvent.js
javax/swing/event/InternalFrameListener.js
javax/swing/event/ListDataEvent.js
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javax/swing/event/ListSelectionEvent.js
javax/swing/event/ListSelectionListener.js
javax/swing/event/MenuEvent.js
javax/swing/event/MenuKeyListener.js
javax/swing/event/MenuListener.js
javax/swing/event/MouseInputListener.js
javax/swing/event/RowSorterEvent.js
javax/swing/event/RowSorterListener.js
javax/swing/event/SwingPropertyChangeSupport.js
javax/swing/event/TableColumnModelEvent.js
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javax/swing/event/TableModelEvent.js
javax/swing/event/TableModelListener.js
javax/swing/event/UndoableEditEvent.js
javax/swing/event/UndoableEditListener.js
javax/swing/plaf/ActionMapUIResource.js
javax/swing/plaf/BorderUIResource.js
javax/swing/plaf/ColorUIResource.js
javax/swing/plaf/ComponentInputMapUIResource.js
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javax/swing/plaf/InsetsUIResource.js
javax/swing/plaf/UIResource.js
javax/swing/plaf/basic/BasicBorders.js
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javax/swing/table/AbstractTableModel.js
javax/swing/table/DefaultTableCellRenderer.js
javax/swing/table/DefaultTableColumnModel.js
javax/swing/table/DefaultTableModel.js
javax/swing/table/JTableHeader.js
javax/swing/table/TableCellEditor.js
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javax/swing/table/TableColumn.js
javax/swing/table/TableColumnModel.js
javax/swing/table/TableModel.js
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javax/swing/text/AbstractDocument.js
javax/swing/text/AttributeSet.js
javax/swing/text/BoxView.js
javax/swing/text/Caret.js
javax/swing/text/CompositeView.js
javax/swing/text/DefaultCaret.js
javax/swing/text/DefaultEditorKit.js
javax/swing/text/DefaultFormatter.js
javax/swing/text/DefaultFormatterFactory.js
javax/swing/text/DefaultStyledDocument.js
javax/swing/text/Document.js
javax/swing/text/DocumentFilter.js
javax/swing/text/EditorKit.js
javax/swing/text/Element.js
javax/swing/text/GapContent.js
javax/swing/text/GapVector.js
javax/swing/text/InternationalFormatter.js
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javax/swing/text/Keymap.js
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javax/swing/text/Position.js
javax/swing/text/Segment.js
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javax/swing/text/SimpleAttributeSet.js
javax/swing/text/Style.js
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javax/swing/text/StyleContext.js
javax/swing/text/StyledDocument.js
javax/swing/text/StyledEditorKit.js
javax/swing/text/TabExpander.js
javax/swing/text/TextAction.js
javax/swing/text/Utilities.js
javax/swing/text/View.js
javax/swing/text/ViewFactory.js
javax/swing/text/WrappedPlainView.js
javax/swing/tree/TreeCellEditor.js
javax/swing/tree/TreeNode.js
javax/swing/undo/AbstractUndoableEdit.js
javax/swing/undo/CompoundEdit.js
javax/swing/undo/UndoableEdit.js
javax/xml/bind/ContextFinder.js
javax/xml/bind/GetPropertyAction.js
javax/xml/bind/JAXBContext.js
javax/xml/bind/JAXBContextFactory.js
javax/xml/bind/JAXBElement.js
javax/xml/bind/ModuleUtil.js
javax/xml/bind/ServiceLoaderUtil.js
javax/xml/bind/Unmarshaller.js
javax/xml/bind/ValidationEventHandler.js
javax/xml/bind/annotation/adapters/CollapsedStringAdapter.js
javax/xml/bind/annotation/adapters/XmlAdapter.js
javax/xml/bind/helpers/AbstractUnmarshallerImpl.js
javax/xml/bind/helpers/DefaultValidationEventHandler.js
javax/xml/datatype/XMLGregorianCalendar.js
javax/xml/namespace/QName.js
javax/xml/stream/XMLInputFactory.js
javax/xml/stream/XMLStreamConstants.js
javax/xml/stream/XMLStreamReader.js
mc_view/Atom.js
mc_view/Bond.js
mc_view/PDBChain.js
mc_view/PDBfile.js
mc_view/Residue.js
net/miginfocom/layout/AC.js
net/miginfocom/layout/AnimSpec.js
net/miginfocom/layout/BoundSize.js
net/miginfocom/layout/CC.js
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net/miginfocom/layout/ContainerWrapper.js
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net/miginfocom/layout/Grid.js
net/miginfocom/layout/LC.js
net/miginfocom/layout/LayoutUtil.js
net/miginfocom/layout/LinkHandler.js
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net/miginfocom/layout/ResizeConstraint.js
net/miginfocom/layout/UnitValue.js
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org/jmol/adapter/readers/cif/MMCifReader.js
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org/jmol/adapter/smarter/AtomSetCollection.js
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org/jmol/adapter/smarter/StructureIterator.js
org/jmol/adapter/smarter/XtalSymmetry.js
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org/jmol/api/JmolAppConsoleInterface.js
org/jmol/api/JmolCallbackListener.js
org/jmol/api/JmolDropEditor.js
org/jmol/api/JmolFilesReaderInterface.js
org/jmol/api/JmolGraphicsInterface.js
org/jmol/api/JmolMeasurementClient.js
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org/jmol/api/JmolRendererInterface.js
org/jmol/api/JmolRepaintManager.js
org/jmol/api/JmolScriptEvaluator.js
org/jmol/api/JmolScriptFunction.js
org/jmol/api/JmolScriptManager.js
org/jmol/api/JmolSelectionListener.js
org/jmol/api/JmolStatusListener.js
org/jmol/api/JmolViewer.js
org/jmol/api/PlatformViewer.js
org/jmol/api/SC.js
org/jmol/api/SymmetryInterface.js
org/jmol/api/Translator.js
org/jmol/atomdata/AtomDataServer.js
org/jmol/atomdata/RadiusData.js
org/jmol/awt/AwtFile.js
org/jmol/awt/AwtFont.js
org/jmol/awt/AwtJmolPopup.js
org/jmol/awt/AwtPopupHelper.js
org/jmol/awt/AwtSwingComponent.js
org/jmol/awt/Display.js
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