webapp/view/ReportSequenceProtein.jsp

   1 <%@ page language="java" contentType="text/html; charset=UTF-8"
   2         pageEncoding="UTF-8"%>
   3 <!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
   4
   5 <%@ taglib uri="http://www.springframework.org/tags" prefix="spring"%>
   6 <%@ taglib uri="http://java.sun.com/jsp/jstl/core" prefix="c"%>
   7 <%@ taglib uri="http://java.sun.com/jsp/jstl/functions" prefix="fn"%>
   8 <%@ taglib uri="http://java.sun.com/jsp/jstl/fmt" prefix="fmt"%>
   9 <%@page import="java.util.ArrayList"%>
  10
  11 <html>
  12 <jsp:include page="fragments/header.jsp" />
  13 <body>
  14         <div class="container">
  15                 <jsp:include page="fragments/bodyHeader.jsp" />
  16                 <spring:url value="/sequence/query" var="searchquery" />
  17                 <spring:url value="/joblog/query" var="jobquery" />
  18
  19                 <c:choose>
  20                         <c:when test="${search == 'SearchCounter'}">
  21                                 <h3>${njobs} proteins with at least ${counter} jobs</h3>
  22                         </c:when>
  23                         <c:otherwise>
  24                                 <h3>Jobs with the given protein sequences:</h3>
  25                         </c:otherwise>
  26                 </c:choose>
  27                 <h3>Time execution: ${timeExecution} ms</h3>
  28                 <c:choose>
  29
  30                 <c:when test="${results == null}">
  31                         <h3>No jobs for sequence ${prot}</h3>
  32                 </c:when>
  33                 <c:otherwise>
  34                         <table border="1" style="border-collapse: collapse; white-space: nowrap">
  35                                 <c:choose>
  36                                         <c:when test="${search == 'SearchCounter'}">
  37                                                 <thead>
  38                                                         <tr>
  39                                                                 <th style="text-align: centre">Number of jobs</th>
  40                                                                 <th style="text-align: left">Protein</th>
  41                                                         </tr>
  42                                                 </thead>
  43                                                 <tbody>
  44                                                         <c:forEach items="${results}" var="res">
  45                                                                 <tr>
  46                                                                         <td>${res.totalId}</td>
  47                                                                         <td
  48                                                                                 style="text-align: left; border-buttom: dotted; font-family: monospace">
  49
  50                                                                                 <a title="Click to view all jobs"
  51                                                                                 href="${searchquery}?prot=${res.prot}&protein=whole&Search=SearchSequence&counterJob=${counter}">${res.prot}</a>
  52                                                                         </td>
  53                                                                 </tr>
  54                                                         </c:forEach>
  55                                         </c:when>
  56                                         <c:otherwise>
  57                                                 <thead>
  58                                                         <tr style="text-align: centre">
  59                                                                 <th>Job ID</th>
  60                                                                 <th>annotation</th>
  61                                                                 <th>Sequence</th>
  62                                                         </tr>
  63                                                         </thead>
  64                                                         <tbody>
  65                                                                 <c:forEach items="${results}" var="res" varStatus="status">
  66                                                                         <c:set var="ann" value="${res.predictions}" />
  67                                                                         <tr style="border-bottom: double">
  68                                                                                 <th rowspan="${ann.mapsize + 2}">
  69                                                                                 <a title="Click to view the job log" href="${jobquery}?IdJob=${res.id}">${res.id}</a></th>
  70                                                                         </tr>
  71                                                                         <tr style="border-bottom: double">
  72                                                                                 <td
  73                                                                                         style="text-align: center; font-weight: bold; font-family: monospace">Protein
  74                                                                                         Sequence</td>
  75                                                                                 <c:if test="${flag == 'whole'}">
  76                                                                                         <td
  77                                                                                                 style="text-align: left; border-buttom: dotted; font-family: monospace"><c:out
  78                                                                                                         value="${res.prot}" /></td>
  79                                                                                 </c:if>
  80                                                                                 <c:if test="${flag == 'part'}">
  81                                                                                         <td
  82                                                                                                 style="text-align: left; border-buttom: dotted; font-family: monospace">
  83                                                                                                 <c:forEach items="${res.subProt}" var="seq">
  84                                                                                                         <c:choose>
  85                                                                                                                 <c:when test="${fn:contains(seq, prot)}">
  86                                                                                                                         <span style="background-color: blue">${seq}</span>
  87                                                                                                                 </c:when>
  88                                                                                                                 <c:otherwise>${seq}</c:otherwise>
  89                                                                                                         </c:choose>
  90                                                                                                 </c:forEach>
  91                                                                                         </td>
  92                                                                                 </c:if>
  93                                                                         </tr>
  94                                                                         <c:forEach items="${ann.predictions}" var="seq"
  95                                                                                 varStatus="status">
  96                                                                                 <tr>
  97                                                                                         <td
  98                                                                                                 style="text-align: center; font-weight: bold; font-family: monospace"><c:out
  99                                                                                                         value="${seq.key}" /></td>
 100                                                                                         <td
 101                                                                                                 style="text-align: left; border-buttom: dotted; font-family: monospace"><c:out
 102                                                                                                         value="${seq.value}" /></td>
 103                                                                                 </tr>
 104                                                                         </c:forEach>
 105                                                                 </c:forEach>
 106                                                 </c:otherwise>
 107                                         </c:choose>
 108                                         </tbody>
 109                                 </table>
 110                         </c:otherwise>
 111                 </c:choose>
 112
 113                 <jsp:include page="fragments/footer.jsp" />
 114         </div>
 115 </body>
 116 </html>