import compbio.cassandra.PredictionIndex;
+/**
+ * POJO bean with information on a protein
+ *
+ * @author Natasha Sherstneva
+ *
+ * @version 1.0
+ * @since Jan 2014
+ */
public class ProteinBean implements PredictionIndex {
- private String sequence;
- private String jnetpred;
- private List<String> jobid;
- private LinkedHashMap<String, String> predictions;
- private List<String> subProt; // protein sequence divided by several parts
- // for highlighting the particular part
- private int size;
+ private String sequence; // protein sequence
+ private String jnetpred; // the main Jpred prediction sequence
+ private List<String> jobid; // job IDd: all jobs with the protein
+ private LinkedHashMap<String, String> predictions; // predictions: Key - prediction ID, Value - prediction sequence
+ private List<String> subProt; // protein sequence divided in several parts
+ // for highlighting a particular part
+ private int size; // a number of predictions for the protein
public ProteinBean(String seq, Map<String, String> pred) {
this.sequence = seq;