- public boolean JobisNotInsterted(String jobid) {
- ResultSet results1 = session.execute("SELECT * FROM ProteinLog WHERE JobID = '" + jobid + "';");
- if (results1.isExhausted()) {
- return true;
- }
- return false;
- }
-
- public boolean JobisNotArchived(String jobid) {
- ResultSet results1 = session.execute("SELECT * FROM JpredArchive WHERE JobID = '" + jobid + "';");
- if (results1.isExhausted()) {
- return true;
- }
- return false;
- }
-
- /*
- * inserting data into the tables for queries
- */
- public int FormQueryTables(long jobtime, String startdate, String enddate, String ip, String jobid, String statusEx,
- String statusFinal, String protein, List<FastaSequence> predictions) {
- if (JobisNotInsterted(jobid)) {
- String com1 = "INSERT INTO ProteinLog " + "(JobID, IP, DataBegin, DataEnd, FinalStatus, ExecutionStatus, Protein)"
- + " VALUES ('" + jobid + "','" + ip + "','" + startdate + "','" + enddate + "','" + statusFinal + "','" + statusEx
- + "','" + protein + "');";
- session.execute(com1);
-
- String com2 = "INSERT INTO ProteinData " + "(jobtime, JobID, Protein)" + " VALUES (" + jobtime + ",'" + jobid + "','" + protein
- + "');";
- session.execute(com2);
-
- String allpredictions = "";
- for (FastaSequence pred : predictions) {
- String predictionname = pred.getId();
- String prediction = pred.getSequence().replaceAll("\n", "");
- allpredictions += "'" + predictionname + "':'" + prediction + "',";
- }
- String final_prediction = "";
- if (null != allpredictions) {
- final_prediction = allpredictions.substring(0, allpredictions.length() - 1);
- }
-
- String check2 = "SELECT * FROM ProteinRow WHERE JobID = '" + jobid + "';";
- ResultSet results2 = session.execute(check2);
- if (results2.isExhausted()) {
- String com3 = "INSERT INTO ProteinRow " + "(Protein, JobID, Predictions)" + " VALUES ('" + protein + "','" + jobid + "',{"
- + final_prediction + "});";
- session.execute(com3);
- }
- return 1;
- }
- return 0;
- }
-
- /*
- * insert data from a real Jpred job: timing+IP, Execution Status, Final
- * status, protein sequence, predictions, alignment, LOG and tar.gz files
- */
- public int ArchiveData(long starttime, long exectime, String ip, String jobid, String statusEx, String statusFinal, String protein,
- List<FastaSequence> predictions, List<FastaSequence> seqs, String LogFile, String archivepath) {
- if (JobisNotArchived(jobid)) {
- String log = LogFile.replaceAll("'", "");
- session.execute("INSERT INTO JpredArchive (JobID, Protein, IP, StartTime, ExecTime,LOG) VALUES ('" + jobid + "','" + protein
- + "','" + ip + "'," + starttime + "," + exectime + ",'" + log + "');");
- if (false) {
- PreparedStatement statement = session.prepare("INSERT INTO JpredArchive (JobID, archive) VALUES (?,?);");
- BoundStatement boundStatement = new BoundStatement(statement);
- session.execute(boundStatement.bind(jobid, archivepath));
- }
-
- for (FastaSequence p : predictions) {
- session.execute("UPDATE JpredArchive SET predictions = predictions + {'" + p.getId() + "':'"
- + p.getSequence().replaceAll("\n", "") + "'} WHERE JobID = '" + jobid + "';");
- }