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JAL-3111 JAL-2962 JAL-2903 JAL-2986 release notes
[jalview.git]
/
help
/
help
/
html
/
releases.html
diff --git
a/help/help/html/releases.html
b/help/help/html/releases.html
index
7d9d7c9
..
b9b1b67
100755
(executable)
--- a/
help/help/html/releases.html
+++ b/
help/help/html/releases.html
@@
-58,7
+58,7
@@
li:before {
<tr>
<td width="60" align="center" nowrap>
<strong><a name="Jalview.2.11">2.11</a><br />
<tr>
<td width="60" align="center" nowrap>
<strong><a name="Jalview.2.11">2.11</a><br />
- <em>20/06/2019</em></strong>
+ <em>27/06/2019</em></strong>
</td>
<td align="left" valign="top">
<ul>
</td>
<td align="left" valign="top">
<ul>
@@
-124,13
+124,17
@@
li:before {
</li>
</ul>
</li>
</li>
</ul>
</li>
- <li><strong>Principal Components Analysis Viewer</strong>
+ <li>
+ <!-- JAL-3205 -->Symmetric score matrices for faster
+ tree and PCA calculations
+ </li>
+ <li><strong>Principal Components Analysis Viewer</strong>
<ul>
<li>
<!-- JAL-1767,JAL-2647 -->Principal Components Analysis results
and Viewer state saved in Jalview Project
</li>
<ul>
<li>
<!-- JAL-1767,JAL-2647 -->Principal Components Analysis results
and Viewer state saved in Jalview Project
</li>
- <li>'Change parameters' option removed from viewer's
+ <li><!-- JAL-2962 -->'Change parameters' option removed from viewer's
drop-down menus</li>
<li>
<!-- JAL-2975 -->Can use shift + arrow keys to rotate PCA image
drop-down menus</li>
<li>
<!-- JAL-2975 -->Can use shift + arrow keys to rotate PCA image
@@
-162,7
+166,7
@@
li:before {
view
</li>
<li>
view
</li>
<li>
- <!-- JAL-2527 -->Alignment Overview now WYSIWIS (What you see is
+ <!-- JAL-2527 JAL-3203 -->Alignment Overview now WYSIWIS (What you see is
what is shown)<br />Only visible region of alignment is shown by
default (can be changed in user preferences)
</li>
what is shown)<br />Only visible region of alignment is shown by
default (can be changed in user preferences)
</li>
@@
-235,11
+239,13
@@
li:before {
<!-- JAL-3003 -->Added remarks about transparent rendering effects
not supported in EPS figure export
</li>
<!-- JAL-3003 -->Added remarks about transparent rendering effects
not supported in EPS figure export
</li>
+ <li><!-- JAL-2903 -->Typos in documentation for Preferences dialog</li>
</ul> <em>Development and Release Processes</em>
<ul>
<li>
<!-- JAL-3196,JAL-3179.JAL-2671 -->Build system migrated from Ant to Gradle
</li>
</ul> <em>Development and Release Processes</em>
<ul>
<li>
<!-- JAL-3196,JAL-3179.JAL-2671 -->Build system migrated from Ant to Gradle
</li>
+ <li><!-- JAL-1424 -->Enhanced checks for missing and duplicated keys in Message bundles</li>
<li>
<!-- JAL-3225 -->Eclipse project configuration managed with
gradle-eclipse
<li>
<!-- JAL-3225 -->Eclipse project configuration managed with
gradle-eclipse
@@
-315,6
+321,10
@@
li:before {
export as Jalview features file
</li>
<li>
export as Jalview features file
</li>
<li>
+ <!-- JAL-2816 -->Tooltips displayed for features filtered by
+ score from view
+ </li>
+ <li>
<!-- JAL-2060 -->'Graduated colour' option not offered for
manually created features (where if feature score is Float.NaN)
</li>
<!-- JAL-2060 -->'Graduated colour' option not offered for
manually created features (where if feature score is Float.NaN)
</li>
@@
-433,9
+443,14
@@
li:before {
<!-- JAL-868 -->Structure colours not updated when associated tree
repartitions the alignment view (Regression in 2.10.5)
</li>
<!-- JAL-868 -->Structure colours not updated when associated tree
repartitions the alignment view (Regression in 2.10.5)
</li>
-
</ul>
</ul>
- <em>New Known Defects</em>
+ <em>Datamodel</em>
+ <ul>
+ <li>
+ <!-- JAL-2986 -->Sequence.findIndex returns wrong value when
+ sequence's End is greater than its length
+ </li>
+ </ul> <em>New Known Defects</em>
<ul>
<li>
<!-- JAL-3313 -->Codon consensus logo incorrectly scaled in gapped
<ul>
<li>
<!-- JAL-3313 -->Codon consensus logo incorrectly scaled in gapped
@@
-646,6
+661,10
@@
li:before {
open URL in the browser can be dropped onto Jalview.</em>
</li>
</ul>
open URL in the browser can be dropped onto Jalview.</em>
</li>
</ul>
+ <em>New Known Defects</em>
+ <ul>
+ <li><!-- JAL-3083 -->Cancel option doesn't reset Colour by Annotation</li>
+ </ul>
</div></td>
</tr>
<tr>
</div></td>
</tr>
<tr>
@@
-805,7
+824,11
@@
li:before {
Sequences' enabled) or Ensembl isoforms (Workaround in
2.10.4 is to fail back to N&W mapping)
</li>
Sequences' enabled) or Ensembl isoforms (Workaround in
2.10.4 is to fail back to N&W mapping)
</li>
- </ul>
+ <li>
+ <!-- JAL-2990 -->Export Annotations from File Menu with CSV
+ option gives blank output
+ </li>
+ </ul>
</div>
</td>
</tr>
</div>
</td>
</tr>