+ <td align="left" valign="top">
+ <ul>
+ <li>
+ <!-- JAL-1793 -->Annotate nucleotide alignments from VCF data files</li>
+ <li>
+ <!-- JAL-3141 -->Optional automatic backups when saving
+ Jalview project or alignment files</li>
+ <li>
+ <!-- JAL-1767,JAL-2647 -->Principal Components Analysis and
+ Viewer state is saved in Jalview Project<br />The 'Change
+ parameters' option has also been removed from the PCA viewer</li>
+ <li>
+ <!-- JAL-3127 -->New 'Colour by Sequence ID' (subgroup) option</li>
+ <li>
+ <!-- JAL-2620 -->Alternative genetic code tables supported for
+ 'Translate as cDNA'</li>
+ <li>
+ <!-- JAL-2933 -->Finder panel remembers last position in each view</li>
+ <li>
+ <!-- JAL-3198 -->More efficient creation of selections and
+ multiple groups when working with large alignments</li>
+ <li>
+ <!-- JAL-3200 -->Speedier import of annotation rows when
+ parsing stockholm files</li>
+ <li>
+ <!-- JAL-3018 -->Update of Ensembl Rest Client to API v10.0</li>
+ <li>
+ <!-- JAL-2808,JAL-2069 -->Sequence features can be filtered and
+ shaded according to any associated attributes (e.g. variant
+ attributes from VCF file, or key-value pairs imported from
+ column 9 of GFF file)</li>
+ <li>
+ <!-- JAL-2897 -->Show synonymous codon variants on peptide sequences</li>
+ <li>
+ <!-- JAL-2792 -->Popup report of a selected sequence feature's details</li>
+ <li>
+ <!-- JAL-3139,JAL-2816 -->More efficient sequence feature render
+ algorithm (Z-sort/transparency and filter aware)</li>
+ <li>
+ <!-- JAL-2527 -->Alignment Overview now by default shows
+ only visible region of alignment (this can be changed in
+ user preferences)</li>
+ <li>
+ <!-- JAL-3169 -->File Chooser stays open after Cancel overwrite</li>
+ <li>
+ <!-- JAL-2420,JAL-3166 -->Better popup menu behaviour when
+ all sequences are hidden</li>
+ <li>
+ <!-- JAL-1244 -->Status bar shows bounds when dragging a selection
+ region, and gap count when inserting or deleting gaps</li>
+ <li>
+ <!-- JAL-3132 -->Status bar updates over sequence and annotation labels</li>
+ <li>
+ <!-- JAL-3093 -->Show annotation tooltips and popup menus in wrapped mode</li>
+ <li>
+ <!-- JAL-3073 -->Can select columns by dragging left/right in annotations</li>
+ <li>
+ <!-- JAL-3049,JAL-3054 -->Improved tooltips in Feature Settings dialog</li>
+ <li>
+ <!-- JAL-2814 -->Help button on Uniprot and PDB search panels</li>
+ <li>
+ <!-- JAL-2621 -->Cursor changes over draggable box in Overview panel</li>
+ <li>
+ <!-- JAL-3203 -->Overview panel default changed to not show hidden regions</li>
+ <li>
+ <!-- JAL-3181 -->Consistent ordering of links in sequence id popup menu</li>
+ <li>
+ <!-- JAL-3021 -->Sequence Details report opens positioned to top of report</li>
+ <li>
+ <!-- JAL-3218 -->Scale panel popup menu allows Hide selected columns adjacent
+ to a hidden column marker</li>
+ <li>
+ <!-- JAL-2975 -->Can use shift + arrow keys to rotate PCA image incrementally</li>
+ <li>
+ <!-- JAL-2965 -->PCA depth queuing with graduated colours</li>
+ </ul>