+ <td align="left" valign="top">
+ <ul>
+ <li>
+ <!-- JAL-3143 -->Timeouts when retrieving data from Ensembl</li>
+ <li>
+ <!-- JAL-3171 -->Warning of 'Duplicate entry' when saving
+ Jalview project involving multiple views</li>
+ <li>
+ <!-- JAL-3164 -->Overview for complementary view in a linked
+ CDS/Protein alignment is not updated when Hide Columns by
+ Annotation dialog hides columns</li>
+ <li>
+ <!-- JAL-3158 -->Selection highlighting in the complement of
+ a CDS/Protein alignment stops working after making a
+ selection in one view, then making another selection in the
+ other view</li>
+ <li>
+ <!-- JAL-3161 -->Annotations tooltip changes beyond visible columns</li>
+ <li>
+ <!-- JAL-3154 -->Table Columns could be re-ordered in
+ Feature Settings and Jalview Preferences panels</li>
+ <li>
+ <!-- JAL-2865 -->Jalview hangs when closing windows
+ or the overview updates with large alignments</li>
+ <li>
+ <!-- JAL-2750 -->Tree and PCA calculation fails for selected
+ region if columns were selected by dragging right-to-left
+ and the mouse moved to the left of the first column</li>
+ <li>
+ <!-- JAL-2846 -->Error message for trying to load in invalid
+ URLs doesn't tell users the invalid URL</li>
+ <li>
+ <!-- JAL-3178 -->Nonpositional features lose feature group
+ on export as Jalview features file</li>
+ <li>
+ <!-- JAL-3097,JAL-3099 -->Blank extra columns drawn or
+ printed when columns are hidden</li>
+ <li>
+ <!-- JAL-3082 -->Regular expression error for '(' in Select Columns by Annotation description</li>
+ <li>
+ <!-- JAL-3072 -->Scroll doesn't stop on mouse up after
+ dragging out of Scale or Annotation Panel</li>
+ <li>
+ <!-- JAL-3075 -->Column selection incorrect after scrolling out of scale panel</li>
+ <li>
+ <!-- JAL-3074 -->Left/right drag in annotation can scroll alignment down</li>
+ <li>
+ <!-- JAL-3108 -->Error if mouse moved before clicking Reveal in scale panel</li>
+ <li>
+ <!-- JAL-3002 -->Column display is out by one after Page Down, Page Up in wrapped mode</li>
+ <li>
+ <!-- JAL-2839 -->Finder doesn't skip hidden regions</li>
+ <li>
+ <!-- JAL-2932 -->Finder searches in minimised alignments</li>
+ <li>
+ <!-- JAL-2250 -->'Apply Colour to All Groups' not always selected on
+ opening an alignment</li>
+ <li>
+ <!-- JAL-3180 -->'Colour by Annotation' not marked selected in Colour menu</li>
+ <li>
+ <!-- JAL-3201 -->Per-group Clustal colour scheme changes when
+ different groups in the alignment are selected</li>
+ <li>
+ <!-- JAL-2717 -->Internationalised colour scheme names not shown correctly in menu</li>
+ <li>
+ <!-- JAL-3206 -->Colour by Annotation can go black at min/max threshold limit</li>
+ <li>
+ <!-- JAL-3125 -->Value input for graduated feature colour threshold gets 'unrounded'</li>
+ <li>
+ <!-- JAL-2982 -->PCA image export doesn't respect background colour</li>
+ <li>
+ <!-- JAL-2963 -->PCA points don't dim when rotated about y axis</li>
+ <li>
+ <!-- JAL-2959 -->PCA Print dialog continues after Cancel</li>
+ <li>
+ <!-- JAL-3078 -->Cancel in Tree Font dialog resets alignment, not Tree font</li>
+ <li>
+ <!-- JAL-2964 -->Associate Tree with All Views not restored from project file</li>
+ <li>
+ <!-- JAL-2915 -->Scrolling of split frame is sluggish if Overview shown in complementary view</li>
+ <li>
+ <!-- JAL-2898 -->stop_gained variants not shown correctly on peptide sequence</li>
+ <li>
+ <!-- JAL-914 -->Help page can be opened twice</li>
+ </ul>
+ <em>Editing</em>
+ <ul>
+ <li>
+ <!-- JAL-2822 -->Start and End should be updated when
+ sequence data at beginning or end of alignment added/removed
+ via 'Edit' sequence</li>
+ <li>
+ <!-- JAL-2541 -->Delete/Cut selection doesn't relocate
+ sequence features correctly when start of sequence is
+ removed (Known defect since 2.10)</li>
+ </ul>
+ <em>New Known Defects</em>
+ <ul>
+ <li>
+ <!-- JAL-2647 -->Input Data menu entry is greyed out when PCA View is restored from a Jalview 2.11 project</li>
+ <li>
+ <!-- JAL-3213 -->Alignment panel height can be too small after 'New View'</li>
+ </ul>