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tidied up system.out messages and moved many to stderr.
[jalview.git]
/
src
/
MCview
/
PDBfile.java
diff --git
a/src/MCview/PDBfile.java
b/src/MCview/PDBfile.java
index
b06e98f
..
44bf1bc
100755
(executable)
--- a/
src/MCview/PDBfile.java
+++ b/
src/MCview/PDBfile.java
@@
-69,8
+69,8
@@
public class PDBfile extends jalview.io.FileParse {
tmpchain.atoms.addElement(tmpatom);
\r
}
\r
} catch(NumberFormatException e) {
\r
tmpchain.atoms.addElement(tmpatom);
\r
}
\r
} catch(NumberFormatException e) {
\r
- System.out.println("Caught" + e);
\r
- System.out.println("Atom not added");
\r
+ System.err.println("Caught" + e);
\r
+ System.err.println("Record not added to PDB model:"+lineArray.elementAt(i).toString());
\r
}
\r
}
\r
}
\r
}
\r
}
\r
}
\r
@@
-135,6
+135,7
@@
public class PDBfile extends jalview.io.FileParse {
PDBfile pdb = new PDBfile("enkp1.pdb","File");
\r
} catch(IOException e) {
\r
System.out.println(e);
\r
PDBfile pdb = new PDBfile("enkp1.pdb","File");
\r
} catch(IOException e) {
\r
System.out.println(e);
\r
+ e.printStackTrace();
\r
System.exit(0);
\r
}
\r
}
\r
System.exit(0);
\r
}
\r
}
\r