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JAL-1636 translate stop codon as '*', mouseover * as STOP
[jalview.git]
/
src
/
jalview
/
analysis
/
Dna.java
diff --git
a/src/jalview/analysis/Dna.java
b/src/jalview/analysis/Dna.java
index
1d5f996
..
5696838
100644
(file)
--- a/
src/jalview/analysis/Dna.java
+++ b/
src/jalview/analysis/Dna.java
@@
-20,12
+20,6
@@
*/
package jalview.analysis;
*/
package jalview.analysis;
-import java.util.ArrayList;
-import java.util.Arrays;
-import java.util.Comparator;
-import java.util.List;
-import java.util.Map;
-
import jalview.api.AlignViewportI;
import jalview.datamodel.AlignedCodon;
import jalview.datamodel.AlignedCodonFrame;
import jalview.api.AlignViewportI;
import jalview.datamodel.AlignedCodon;
import jalview.datamodel.AlignedCodonFrame;
@@
-47,9
+41,15
@@
import jalview.util.DBRefUtils;
import jalview.util.MapList;
import jalview.util.ShiftList;
import jalview.util.MapList;
import jalview.util.ShiftList;
+import java.util.ArrayList;
+import java.util.Arrays;
+import java.util.Comparator;
+import java.util.List;
+import java.util.Map;
+
public class Dna
{
public class Dna
{
- private static final String STOP_X = "X";
+ private static final String STOP_ASTERIX = "*";
private static final Comparator<AlignedCodon> comparator = new CodonComparator();
private static final Comparator<AlignedCodon> comparator = new CodonComparator();
@@
-544,7
+544,7
@@
public class Dna
}
if (aa.equals("STOP"))
{
}
if (aa.equals("STOP"))
{
- aa = STOP_X;
+ aa = STOP_ASTERIX;
}
resSize++;
}
}
resSize++;
}