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Merge remote-tracking branch 'origin/develop' into bug/JAL-2665-2.10.3
[jalview.git]
/
src
/
jalview
/
analysis
/
PCA.java
diff --git
a/src/jalview/analysis/PCA.java
b/src/jalview/analysis/PCA.java
index
3ec7995
..
42a168d
100755
(executable)
--- a/
src/jalview/analysis/PCA.java
+++ b/
src/jalview/analysis/PCA.java
@@
-43,7
+43,7
@@
public class PCA implements Runnable
final private AlignmentView seqs;
private ScoreModelI scoreModel;
final private AlignmentView seqs;
private ScoreModelI scoreModel;
-
+
private SimilarityParamsI similarityParams;
public PCA(AlignmentView s, ScoreModelI sm, SimilarityParamsI options)
private SimilarityParamsI similarityParams;
public PCA(AlignmentView s, ScoreModelI sm, SimilarityParamsI options)
@@
-51,7
+51,7
@@
public class PCA implements Runnable
this.seqs = s;
this.similarityParams = options;
this.scoreModel = sm;
this.seqs = s;
this.similarityParams = options;
this.scoreModel = sm;
-
+
details.append("PCA calculation using " + sm.getName()
+ " sequence similarity matrix\n========\n\n");
}
details.append("PCA calculation using " + sm.getName()
+ " sequence similarity matrix\n========\n\n");
}
@@
-193,7
+193,8
@@
public class PCA implements Runnable
q.printStackTrace();
details.append("\n*** Unexpected exception when performing PCA ***\n"
+ q.getLocalizedMessage());
q.printStackTrace();
details.append("\n*** Unexpected exception when performing PCA ***\n"
+ q.getLocalizedMessage());
- details.append("*** Matrices below may not be fully diagonalised. ***\n");
+ details.append(
+ "*** Matrices below may not be fully diagonalised. ***\n");
}
details.append(" --- New diagonalization matrix ---\n");
}
details.append(" --- New diagonalization matrix ---\n");