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JAL-1807
[jalview.git]
/
src
/
jalview
/
analysis
/
StructureFrequency.java
diff --git
a/src/jalview/analysis/StructureFrequency.java
b/src/jalview/analysis/StructureFrequency.java
index
d7d07bc
..
d77c5ac
100644
(file)
--- a/
src/jalview/analysis/StructureFrequency.java
+++ b/
src/jalview/analysis/StructureFrequency.java
@@
-421,7
+421,7
@@
public class StructureFrequency
* ((c == 0) ? "" : "; ") + alphabet[c] + " " + ((int) tval) + "%"; } }
* else {
*/
* ((c == 0) ? "" : "; ") + alphabet[c] + " " + ((int) tval) + "%"; } }
* else {
*/
- int[][] ca = new int[625][];
+ int[][] ca = javajs.util.AU.newInt2(625);// BH new int[625][];
float[] vl = new float[625];
int x = 0;
for (int c = 65; c < 90; c++)
float[] vl = new float[625];
int x = 0;
for (int c = 65; c < 90; c++)
@@
-434,7
+434,7
@@
public class StructureFrequency
x++;
}
}
x++;
}
}
- QuickSort.sortFloat(vl, ca);
+ QuickSort.sortFloatObject(vl, ca);
int p = 0;
/*
int p = 0;
/*
@@
-487,7
+487,7
@@
public class StructureFrequency
// TODO fix the object length, also do it in completeConsensus
// Object[] ca = new Object[625];
// TODO fix the object length, also do it in completeConsensus
// Object[] ca = new Object[625];
- int[][] ca = new int[625][];
+ int[][] ca = javajs.util.AU.newInt2(625);// BH new int[625][];
float[] vl = new float[625];
int x = 0;
for (int c = 65; c < 90; c++)
float[] vl = new float[625];
int x = 0;
for (int c = 65; c < 90; c++)
@@
-500,7
+500,7
@@
public class StructureFrequency
x++;
}
}
x++;
}
}
- QuickSort.sortFloat(vl, ca);
+ QuickSort.sortFloatObject(vl, ca);
int valuesCount = 0;
rtnval[1] = 0;
int valuesCount = 0;
rtnval[1] = 0;
@@
-526,6
+526,11
@@
public class StructureFrequency
return result;
}
return result;
}
+ /**
+ * @j2sIgnore
+ *
+ * @param args
+ */
public static void main(String args[])
{
// Short test to see if checkBpType works
public static void main(String args[])
{
// Short test to see if checkBpType works