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Merge branch 'develop' into spike/JAL-4047/JAL-4048_columns_in_sequenceID
[jalview.git]
/
src
/
jalview
/
api
/
AlignViewportI.java
diff --git
a/src/jalview/api/AlignViewportI.java
b/src/jalview/api/AlignViewportI.java
index
0cfd03d
..
ba3ed75
100644
(file)
--- a/
src/jalview/api/AlignViewportI.java
+++ b/
src/jalview/api/AlignViewportI.java
@@
-20,6
+20,13
@@
*/
package jalview.api;
*/
package jalview.api;
+import java.awt.Color;
+import java.awt.Font;
+import java.util.Hashtable;
+import java.util.Iterator;
+import java.util.List;
+import java.util.Map;
+
import jalview.analysis.Conservation;
import jalview.analysis.TreeModel;
import jalview.datamodel.AlignmentAnnotation;
import jalview.analysis.Conservation;
import jalview.analysis.TreeModel;
import jalview.datamodel.AlignmentAnnotation;
@@
-37,13
+44,7
@@
import jalview.datamodel.SequenceI;
import jalview.renderer.ResidueShaderI;
import jalview.schemes.ColourSchemeI;
import jalview.viewmodel.ViewportRanges;
import jalview.renderer.ResidueShaderI;
import jalview.schemes.ColourSchemeI;
import jalview.viewmodel.ViewportRanges;
-
-import java.awt.Color;
-import java.awt.Font;
-import java.util.Hashtable;
-import java.util.Iterator;
-import java.util.List;
-import java.util.Map;
+import jalview.viewmodel.seqfeatures.IdColumns;
/**
* @author jimp
/**
* @author jimp
@@
-566,5
+567,7
@@
public interface AlignViewportI extends ViewStyleI
*/
Iterator<int[]> getViewAsVisibleContigs(boolean selectedRegionOnly);
*/
Iterator<int[]> getViewAsVisibleContigs(boolean selectedRegionOnly);
+ IdColumns getIdColumns();
+
ContactMatrixI getContactMatrix(AlignmentAnnotation alignmentAnnotation);
}
ContactMatrixI getContactMatrix(AlignmentAnnotation alignmentAnnotation);
}