- tcoffeeColour.setEnabled(true);\r
- tcoffeeScoreFile = file;\r
- \r
- // switch to this color\r
- changeColour(new TCoffeeColourScheme(tcoffeeScoreFile));\r
+ // TODO add parameter to indicate if matching should be done\r
+ if (file.annotateAlignment(alignPanel.getAlignment(), false))\r
+ {\r
+ tcoffeeColour.setEnabled(true);\r
+ // switch to this color\r
+ changeColour(new TCoffeeColourScheme(alignPanel.getAlignment()));\r
+ }\r