hconsensus = new Hashtable[aWidth];
AAFrequency.calculate(alignment.getSequencesArray(), 0, alignment
hconsensus = new Hashtable[aWidth];
AAFrequency.calculate(alignment.getSequencesArray(), 0, alignment
AAFrequency.completeConsensus(consensus, hconsensus, 0, aWidth,
ignoreGapsInConsensusCalculation,
includeAllConsensusSymbols);
AAFrequency.completeConsensus(consensus, hconsensus, 0, aWidth,
ignoreGapsInConsensusCalculation,
includeAllConsensusSymbols);